Wall clock time and date at job start Tue Mar 31 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86789 * 119.99587 * 2 1 4 4 H 1.48502 * 109.47631 * 270.00264 * 3 2 1 5 5 H 1.48500 * 109.47379 * 30.00653 * 3 2 1 6 6 H 1.48503 * 109.47267 * 150.00148 * 3 2 1 7 7 C 1.38812 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99816 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99381 * 179.97438 * 7 2 1 10 10 C 1.46509 * 119.99549 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.47078 * 34.99986 * 10 9 7 12 12 C 1.52998 * 109.47101 * 155.00298 * 10 9 7 13 13 N 1.46503 * 109.46969 * 305.00094 * 12 10 9 14 14 C 1.34779 * 119.99980 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99961 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00080 * 179.97438 * 14 13 12 17 17 H 1.09011 * 115.52537 * 325.49544 * 16 14 13 18 18 C 1.52993 * 117.46356 * 110.95656 * 16 14 13 19 19 H 1.09004 * 119.29949 * 356.29777 * 18 16 14 20 20 C 1.54268 * 118.20211 * 201.21270 * 18 16 14 21 21 C 1.54885 * 104.19796 * 272.21394 * 20 18 16 22 22 C 1.57046 * 102.88178 * 38.08445 * 21 20 18 23 23 C 1.52995 * 117.46273 * 180.02562 * 16 14 13 24 24 H 1.09002 * 119.29925 * 3.70795 * 23 16 14 25 25 C 1.53006 * 109.46946 * 275.00213 * 10 9 7 26 26 C 1.53000 * 117.49776 * 60.00155 * 25 10 9 27 27 C 1.52997 * 117.49537 * 128.62610 * 25 10 9 28 28 H 0.96994 * 119.99986 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00398 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47013 * 64.99855 * 12 10 9 31 31 H 1.08993 * 109.47426 * 185.00167 * 12 10 9 32 32 H 0.96997 * 119.99911 * 359.97438 * 13 12 10 33 33 H 1.09004 * 110.48293 * 30.89603 * 20 18 16 34 34 H 1.09001 * 110.48324 * 153.53362 * 20 18 16 35 35 H 1.08994 * 110.75677 * 156.25457 * 21 20 18 36 36 H 1.09001 * 110.75780 * 279.44358 * 21 20 18 37 37 H 1.09000 * 110.55789 * 203.83939 * 22 21 20 38 38 H 1.08999 * 111.38033 * 80.52691 * 22 21 20 39 39 H 1.09002 * 115.56020 * 274.30738 * 25 10 9 40 40 H 1.08990 * 117.49990 * 359.97438 * 26 25 10 41 41 H 1.09004 * 117.49237 * 214.97568 * 26 25 10 42 42 H 1.08999 * 117.49685 * 145.02116 * 27 25 10 43 43 H 1.08999 * 117.52022 * 359.97438 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 -0.0011 10 6 4.1123 -2.4708 -0.0011 11 1 3.5647 -3.2065 -0.5901 12 6 5.4992 -2.2589 -0.6112 13 7 5.3612 -1.6640 -1.9429 14 6 6.4589 -1.3860 -2.6738 15 8 7.5609 -1.6287 -2.2294 16 6 6.3169 -0.7746 -4.0439 17 1 5.4452 -1.0966 -4.6139 18 6 6.7810 0.6722 -4.2224 19 1 7.1369 1.2291 -3.3556 20 6 6.2173 1.4772 -5.4116 21 6 7.1846 1.1587 -6.5785 22 6 7.5105 -0.3617 -6.3581 23 6 7.6009 -0.4836 -4.8232 24 1 8.5608 -0.7782 -4.3989 25 6 4.2589 -2.9750 1.4361 26 6 2.9757 -3.2491 2.2229 27 6 3.8324 -4.4154 1.7262 28 1 -0.4850 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0007 30 1 6.0786 -1.5914 0.0266 31 1 6.0106 -3.2179 -0.6930 32 1 4.4798 -1.4703 -2.2985 33 1 5.2071 1.1456 -5.6520 34 1 6.2266 2.5441 -5.1887 35 1 6.6933 1.3096 -7.5397 36 1 8.0875 1.7654 -6.5085 37 1 8.4646 -0.6192 -6.8181 38 1 6.7152 -0.9987 -6.7450 39 1 5.1133 -2.5823 1.9874 40 1 2.0271 -3.0698 1.7170 41 1 2.9859 -3.0366 3.2920 42 1 4.4062 -4.9703 2.4686 43 1 3.4470 -5.0040 0.8937 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661118265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:34 Heat of formation + Delta-G solvation = -0.109531 kcal Electronic energy + Delta-G solvation = -21779.391082 eV Core-core repulsion = 18632.175174 eV Total energy + Delta-G solvation = -3147.215908 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.39595 -39.70093 -38.83876 -36.17124 -35.19958 -33.17881 -32.56615 -30.14532 -29.15889 -26.10237 -24.72775 -23.36757 -23.03421 -21.74576 -21.45410 -20.91637 -20.63486 -19.64171 -18.41708 -17.18581 -16.98703 -16.35299 -16.21505 -16.04891 -15.64430 -15.26965 -15.11701 -14.65789 -14.34982 -14.21461 -14.04331 -13.76498 -13.14751 -13.03388 -12.76320 -12.46614 -12.38932 -12.30017 -12.27396 -12.10762 -11.97889 -11.71779 -11.66484 -11.18335 -11.08475 -11.02964 -10.95394 -10.85352 -10.60067 -10.09072 -9.32831 -7.97468 -5.30088 1.38897 1.40445 1.41241 1.46615 2.11702 2.50102 2.70619 2.98007 3.36797 3.50522 3.63702 3.71297 3.73538 3.81127 4.04590 4.14405 4.17317 4.25860 4.30171 4.33521 4.46667 4.48566 4.52460 4.61110 4.65341 4.76767 4.81334 4.89326 4.97114 5.08555 5.13111 5.15808 5.18978 5.20880 5.27337 5.38013 5.43982 5.48719 5.50482 5.83841 6.24693 6.53082 7.10236 7.18403 7.84538 8.03780 9.23589 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.005184 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.490645 B = 5399.955480 C = 6845.555029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.056 4.056 3 Si 0.941 3.059 4 H -0.275 1.275 5 H -0.305 1.305 6 H -0.264 1.264 7 C -0.207 4.207 8 H 0.066 0.934 9 N -0.742 5.742 10 C 0.201 3.799 11 H 0.060 0.940 12 C 0.125 3.875 13 N -0.712 5.712 14 C 0.538 3.462 15 O -0.585 6.585 16 C -0.172 4.172 17 H 0.136 0.864 18 C -0.141 4.141 19 H 0.099 0.901 20 C -0.097 4.097 21 C -0.116 4.116 22 C -0.093 4.093 23 C -0.128 4.128 24 H 0.104 0.896 25 C -0.171 4.171 26 C -0.176 4.176 27 C -0.161 4.161 28 H 0.255 0.745 29 H 0.363 0.637 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.709 -1.768 -10.409 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.247 4.247 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.232 1.232 6 H -0.189 1.189 7 C -0.338 4.338 8 H 0.084 0.916 9 N -0.384 5.384 10 C 0.093 3.907 11 H 0.078 0.922 12 C 0.001 3.999 13 N -0.362 5.362 14 C 0.326 3.674 15 O -0.466 6.466 16 C -0.193 4.193 17 H 0.154 0.846 18 C -0.160 4.160 19 H 0.117 0.883 20 C -0.135 4.135 21 C -0.153 4.153 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.122 0.878 25 C -0.192 4.192 26 C -0.213 4.213 27 C -0.199 4.199 28 H 0.064 0.936 29 H 0.196 0.804 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.128 0.872 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.267 -2.022 -10.102 18.418 hybrid contribution -0.544 1.232 0.607 1.477 sum 14.723 -0.791 -9.496 17.537 Atomic orbital electron populations 1.69853 1.06873 1.26222 1.60312 1.25265 0.95737 1.00318 1.03395 0.85631 0.78251 0.81066 0.78067 1.20148 1.23198 1.18942 1.18916 0.81962 0.93200 1.39739 0.91633 1.42806 1.02653 1.03252 1.89713 1.20125 0.90166 0.87860 0.92591 0.92216 1.21530 0.96902 0.98674 0.82818 1.45970 1.09678 1.62816 1.17735 1.20055 0.83648 0.77240 0.86448 1.90635 1.27153 1.55434 1.73366 1.22417 1.02120 1.00389 0.94402 0.84586 1.23334 1.03391 0.88377 1.00907 0.88251 1.22056 0.99451 0.99589 0.92360 1.23037 0.99177 0.94953 0.98129 1.22429 1.02995 0.97042 0.90531 1.23304 0.93974 1.01623 0.95758 0.87801 1.22898 0.98863 0.99176 0.98301 1.22717 0.95615 1.03635 0.99360 1.23017 1.03141 0.90201 1.03496 0.93633 0.80435 0.92397 0.89929 0.75170 0.90758 0.90313 0.89552 0.90669 0.89640 0.90328 0.87933 0.90762 0.89369 0.87198 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.40 13.97 21.65 0.30 -60.10 16 2 C -0.06 -3.10 5.50 84.86 0.47 -2.64 16 3 Si 0.94 44.25 27.73 68.60 1.90 46.16 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.26 -11.64 6.52 99.48 0.65 -10.99 16 7 C -0.21 -10.75 9.11 84.03 0.77 -9.99 16 8 H 0.07 3.73 7.14 -2.91 -0.02 3.71 16 9 N -0.74 -31.37 4.34 -322.93 -1.40 -32.77 16 10 C 0.20 6.91 2.70 44.99 0.12 7.03 16 11 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 12 C 0.13 3.87 5.22 86.38 0.45 4.32 16 13 N -0.71 -21.80 5.39 -463.07 -2.49 -24.30 16 14 C 0.54 16.83 7.61 87.66 0.67 17.50 16 15 O -0.58 -21.84 16.32 -3.03 -0.05 -21.89 16 16 C -0.17 -4.28 5.73 -11.55 -0.07 -4.34 16 17 H 0.14 2.90 8.14 -2.38 -0.02 2.88 16 18 C -0.14 -3.24 6.64 -10.06 -0.07 -3.31 16 19 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 20 C -0.10 -1.72 6.63 31.67 0.21 -1.51 16 21 C -0.12 -1.59 6.96 32.66 0.23 -1.36 16 22 C -0.09 -1.43 6.79 32.44 0.22 -1.21 16 23 C -0.13 -2.81 6.34 -10.06 -0.06 -2.88 16 24 H 0.10 2.62 7.78 -2.39 -0.02 2.60 16 25 C -0.17 -5.47 5.36 -10.79 -0.06 -5.53 16 26 C -0.18 -6.11 9.78 30.60 0.30 -5.82 16 27 C -0.16 -4.42 10.18 30.60 0.31 -4.11 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.36 15.44 5.66 -92.71 -0.52 14.92 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 12.57 8.14 -92.71 -0.75 11.81 16 33 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 3.07 8.11 -2.39 -0.02 3.05 16 40 H 0.07 3.15 6.23 -2.39 -0.01 3.13 16 41 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 42 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 Total: -1.00 -65.39 347.99 1.41 -63.98 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: -0.33 Total: 42.76 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: 3.48 Total: -13.84 kcal Atomic # 7 Polarization: -113.57 SS G_CDS: -3.59 Total: -117.17 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.05 Total: -21.89 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.16 kcal Total: -65.39 1.41 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661118265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.869 kcal (2) G-P(sol) polarization free energy of solvation -65.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds