Wall clock time and date at job start Tue Mar 31 2020 00:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99996 * 2 1 4 4 H 1.48508 * 109.46773 * 239.99851 * 3 2 1 5 5 H 1.48498 * 109.46816 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47395 * 120.00283 * 3 2 1 7 7 C 1.38818 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99731 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99654 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99786 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47004 * 325.00023 * 10 9 7 12 12 C 1.52993 * 109.46854 * 205.00019 * 10 9 7 13 13 N 1.46496 * 109.47551 * 55.00261 * 12 10 9 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 10 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 H 1.08996 * 115.52791 * 325.48990 * 16 14 13 18 18 C 1.52998 * 117.45764 * 110.95795 * 16 14 13 19 19 H 1.09000 * 119.30075 * 356.28693 * 18 16 14 20 20 C 1.54274 * 118.19777 * 201.20962 * 18 16 14 21 21 C 1.54885 * 104.19514 * 272.21300 * 20 18 16 22 22 C 1.57046 * 102.88516 * 38.08639 * 21 20 18 23 23 C 1.53001 * 117.45589 * 179.97438 * 16 14 13 24 24 H 1.08998 * 119.30261 * 3.70849 * 23 16 14 25 25 C 1.52999 * 109.46955 * 84.99875 * 10 9 7 26 26 C 1.53000 * 117.50062 * 8.62101 * 25 10 9 27 27 C 1.52990 * 60.00120 * 252.50868 * 26 25 10 28 28 H 0.97001 * 119.99582 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99992 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47250 * 295.00040 * 12 10 9 31 31 H 1.09004 * 109.46862 * 175.00063 * 12 10 9 32 32 H 0.96999 * 119.99694 * 359.97438 * 13 12 10 33 33 H 1.09010 * 110.47863 * 30.88962 * 20 18 16 34 34 H 1.08994 * 110.48743 * 153.52667 * 20 18 16 35 35 H 1.08999 * 110.75544 * 156.25423 * 21 20 18 36 36 H 1.08996 * 110.75918 * 279.43920 * 21 20 18 37 37 H 1.09001 * 110.56133 * 203.84023 * 22 21 20 38 38 H 1.08997 * 111.37961 * 80.52318 * 22 21 20 39 39 H 1.08996 * 115.54643 * 154.33145 * 25 10 9 40 40 H 1.09002 * 117.49625 * 0.02562 * 26 25 10 41 41 H 1.09005 * 117.49752 * 145.01501 * 26 25 10 42 42 H 1.08999 * 117.49992 * 252.50996 * 27 26 25 43 43 H 1.09002 * 117.51888 * 107.48051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5889 12 6 1.1810 -4.7521 -0.6091 13 7 0.7344 -4.3355 -1.9407 14 6 -0.0555 -5.1473 -2.6711 15 8 -0.3962 -6.2229 -2.2263 16 6 -0.5153 -4.7184 -4.0408 17 1 -0.7044 -3.6516 -4.1601 18 6 0.0535 -5.4727 -5.2442 19 1 0.8078 -6.2428 -5.0831 20 6 0.0162 -4.7805 -6.6224 21 6 -1.3689 -5.1615 -7.2015 22 6 -2.3021 -5.1109 -5.9394 23 6 -1.4097 -5.6852 -4.8195 24 1 -1.7332 -6.6119 -4.3455 25 6 2.4220 -4.0356 1.4375 26 6 1.8158 -3.1967 2.5644 27 6 3.3012 -3.0611 2.2240 28 1 -0.4849 0.8401 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 0.3134 -4.9200 0.0291 31 1 1.7559 -5.6745 -0.6908 32 1 1.0065 -3.4751 -2.2963 33 1 0.0979 -3.6994 -6.5086 34 1 0.8141 -5.1591 -7.2612 35 1 -1.6905 -4.4323 -7.9450 36 1 -1.3461 -6.1634 -7.6300 37 1 -3.1805 -5.7391 -6.0873 38 1 -2.5982 -4.0884 -5.7049 39 1 2.5619 -5.1007 1.6219 40 1 1.1573 -2.3753 2.2819 41 1 1.5564 -3.7101 3.4903 42 1 4.0191 -3.4852 2.9260 43 1 3.6207 -2.1504 1.7175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661118267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:37 Heat of formation + Delta-G solvation = 1.605470 kcal Electronic energy + Delta-G solvation = -21746.606012 eV Core-core repulsion = 18599.464472 eV Total energy + Delta-G solvation = -3147.141540 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.35722 -39.68611 -38.85443 -35.90549 -35.05577 -32.87220 -32.33282 -29.87005 -29.13788 -26.08745 -25.10988 -23.54443 -22.92046 -21.65215 -21.21136 -20.62504 -20.46678 -19.25145 -18.40563 -17.15017 -16.84463 -16.35537 -16.25831 -15.99987 -15.60827 -15.21900 -15.10854 -14.51755 -14.33452 -14.05182 -13.81414 -13.64724 -12.94603 -12.83705 -12.65753 -12.61105 -12.42542 -12.26088 -12.15400 -11.97131 -11.95656 -11.69800 -11.59234 -11.14065 -11.04797 -11.01980 -10.86872 -10.64959 -10.55745 -10.02335 -8.99729 -7.88095 -5.16000 1.45556 1.50429 1.51578 1.56644 2.19270 2.58782 2.72118 3.12684 3.45691 3.54843 3.73799 3.75951 3.87104 3.97182 4.12331 4.19840 4.27169 4.28001 4.32861 4.48260 4.49540 4.50831 4.58287 4.65996 4.68149 4.83042 4.92039 4.96059 4.99154 5.16076 5.17390 5.20715 5.21998 5.24326 5.30138 5.41546 5.50523 5.55048 5.66238 5.67812 6.31543 6.58968 7.23433 7.40075 8.10302 8.36197 9.34170 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016145 B = 0.004522 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.909970 B = 6190.968702 C = 7403.865662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.065 4.065 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.303 1.303 6 H -0.284 1.284 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.194 3.806 11 H 0.061 0.939 12 C 0.128 3.872 13 N -0.706 5.706 14 C 0.538 3.462 15 O -0.589 6.589 16 C -0.176 4.176 17 H 0.126 0.874 18 C -0.126 4.126 19 H 0.108 0.892 20 C -0.095 4.095 21 C -0.115 4.115 22 C -0.097 4.097 23 C -0.136 4.136 24 H 0.102 0.898 25 C -0.170 4.170 26 C -0.174 4.174 27 C -0.168 4.168 28 H 0.247 0.753 29 H 0.373 0.627 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.474 -10.245 -11.017 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.258 4.258 3 Si 0.788 3.212 4 H -0.205 1.205 5 H -0.230 1.230 6 H -0.211 1.211 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.360 5.360 10 C 0.084 3.916 11 H 0.079 0.921 12 C 0.003 3.997 13 N -0.355 5.355 14 C 0.326 3.674 15 O -0.471 6.471 16 C -0.197 4.197 17 H 0.144 0.856 18 C -0.144 4.144 19 H 0.127 0.873 20 C -0.132 4.132 21 C -0.153 4.153 22 C -0.134 4.134 23 C -0.154 4.154 24 H 0.120 0.880 25 C -0.191 4.191 26 C -0.211 4.211 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.206 0.794 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.400 -10.861 -10.708 15.317 hybrid contribution 0.025 1.574 0.588 1.681 sum 1.425 -9.287 -10.120 13.809 Atomic orbital electron populations 1.69796 1.06355 1.25654 1.59780 1.25311 0.95967 1.00236 1.04252 0.85451 0.77264 0.80494 0.77963 1.20515 1.23004 1.21052 1.19387 0.91097 0.84556 1.40177 0.90595 1.42512 1.05234 1.00262 1.87978 1.20112 0.93903 0.84799 0.92752 0.92136 1.21466 0.98007 0.97421 0.82779 1.45915 1.50213 1.21831 1.17585 1.20052 0.77343 0.83501 0.86547 1.90621 1.58559 1.24459 1.73464 1.22365 1.07616 1.00084 0.89618 0.85638 1.23332 0.97413 1.01051 0.92653 0.87345 1.22058 0.98727 1.00258 0.92164 1.23036 0.93009 1.02563 0.96643 1.22448 0.97494 1.01068 0.92385 1.23294 0.93407 0.99418 0.99312 0.87971 1.23055 1.05161 0.96756 0.94099 1.22763 0.96861 1.03065 0.98403 1.22827 0.93324 1.01123 1.03254 0.94383 0.79418 0.93261 0.90370 0.75266 0.90922 0.89378 0.89698 0.90322 0.89866 0.91085 0.86751 0.90447 0.89131 0.87995 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -55.87 13.06 21.65 0.28 -55.58 16 2 C -0.07 -3.47 5.50 84.86 0.47 -3.01 16 3 Si 0.96 44.05 29.55 68.60 2.03 46.08 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.22 -10.95 8.15 84.03 0.69 -10.27 16 8 H 0.08 3.66 6.91 -2.91 -0.02 3.64 16 9 N -0.72 -32.20 3.08 -322.95 -0.99 -33.20 16 10 C 0.19 6.97 2.86 44.99 0.13 7.10 16 11 H 0.06 2.17 8.08 -2.39 -0.02 2.16 16 12 C 0.13 4.34 5.21 86.38 0.45 4.79 16 13 N -0.71 -23.90 5.39 -463.07 -2.49 -26.40 16 14 C 0.54 18.52 7.61 87.66 0.67 19.19 16 15 O -0.59 -23.85 16.32 -3.03 -0.05 -23.90 16 16 C -0.18 -4.86 5.73 -11.54 -0.07 -4.93 16 17 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 18 C -0.13 -2.82 6.64 -10.08 -0.07 -2.89 16 19 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 20 C -0.09 -1.57 6.63 31.67 0.21 -1.36 16 21 C -0.12 -1.65 6.96 32.66 0.23 -1.42 16 22 C -0.10 -1.76 6.79 32.45 0.22 -1.54 16 23 C -0.14 -3.30 6.33 -10.08 -0.06 -3.37 16 24 H 0.10 2.84 7.78 -2.39 -0.02 2.82 16 25 C -0.17 -5.61 5.71 -10.79 -0.06 -5.68 16 26 C -0.17 -6.38 9.74 30.59 0.30 -6.08 16 27 C -0.17 -5.69 9.86 30.59 0.30 -5.38 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.37 18.78 7.80 -92.71 -0.72 18.06 16 30 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 32 H 0.41 14.04 8.14 -92.71 -0.75 13.29 16 33 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.11 3.20 8.11 -2.39 -0.02 3.18 16 40 H 0.08 3.55 6.68 -2.39 -0.02 3.53 16 41 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.08 3.06 6.23 -2.39 -0.01 3.04 16 Total: -1.00 -61.14 348.19 1.70 -59.44 By element: Atomic # 1 Polarization: 48.87 SS G_CDS: -0.47 Total: 48.40 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 3.40 Total: -14.84 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -3.21 Total: -115.18 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -61.14 1.70 -59.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661118267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.043 kcal (2) G-P(sol) polarization free energy of solvation -61.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds