Wall clock time and date at job start Tue Mar 31 2020 00:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99857 * 2 1 4 4 H 1.48500 * 109.46599 * 272.01893 * 3 2 1 5 5 H 1.48492 * 109.47108 * 32.01967 * 3 2 1 6 6 H 1.48495 * 109.47121 * 152.02443 * 3 2 1 7 7 C 1.38809 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00017 * 336.83517 * 7 2 1 9 9 N 1.36941 * 119.99988 * 156.82630 * 7 2 1 10 10 C 1.46500 * 120.00145 * 320.89017 * 9 7 2 11 11 C 1.52997 * 109.47179 * 270.00130 * 10 9 7 12 12 N 1.46500 * 109.46922 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99471 * 180.02562 * 12 11 10 14 14 O 1.21272 * 120.00340 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99586 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.64179 * 59.99671 * 15 13 12 17 17 C 1.53025 * 109.81800 * 299.46905 * 15 13 12 18 18 C 1.50068 * 110.14598 * 190.77909 * 17 15 13 19 19 C 1.29436 * 124.08055 * 17.12639 * 18 17 15 20 20 C 1.50068 * 124.07474 * 359.53395 * 19 18 17 21 21 C 1.53028 * 110.14841 * 17.12795 * 20 19 18 22 22 C 1.46497 * 119.99788 * 140.89172 * 9 7 2 23 23 C 1.53003 * 117.49859 * 4.01229 * 22 9 7 24 24 C 1.53001 * 60.00433 * 252.51366 * 23 22 9 25 25 H 0.97002 * 120.00426 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46926 * 149.99463 * 10 9 7 27 27 H 1.09003 * 109.46799 * 30.00086 * 10 9 7 28 28 H 1.09000 * 109.47236 * 59.99871 * 11 10 9 29 29 H 1.09013 * 109.46709 * 299.99716 * 11 10 9 30 30 H 0.96995 * 119.99848 * 359.97438 * 12 11 10 31 31 H 1.08999 * 109.35735 * 310.98209 * 17 15 13 32 32 H 1.09000 * 109.35822 * 70.57116 * 17 15 13 33 33 H 1.08000 * 117.95951 * 197.10815 * 18 17 15 34 34 H 1.08002 * 117.96884 * 179.50928 * 19 18 17 35 35 H 1.09001 * 109.36257 * 256.92500 * 20 19 18 36 36 H 1.08998 * 109.24871 * 137.26329 * 20 19 18 37 37 H 1.09000 * 109.64521 * 190.87713 * 21 20 19 38 38 H 1.09004 * 109.63976 * 70.24861 * 21 20 19 39 39 H 1.08992 * 115.55247 * 149.72734 * 22 9 7 40 40 H 1.08996 * 117.50138 * 0.02562 * 23 22 9 41 41 H 1.09007 * 117.49607 * 145.02039 * 23 22 9 42 42 H 1.08998 * 117.49689 * 252.51673 * 24 23 22 43 43 H 1.08999 * 117.49667 * 107.48923 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4549 2.0711 -1.3992 5 1 1.4696 2.6400 0.7423 6 1 3.5684 1.4283 0.6567 7 6 2.0103 -1.2021 0.0005 8 1 1.5356 -2.0996 0.3689 9 7 3.2968 -1.2501 -0.4661 10 6 3.6778 -0.4691 -1.6456 11 6 3.4608 -1.3094 -2.9056 12 7 3.8425 -0.5285 -4.0849 13 6 3.7344 -1.0691 -5.3148 14 8 3.3218 -2.2020 -5.4451 15 6 4.1264 -0.2657 -6.5280 16 1 5.1772 0.0155 -6.4574 17 6 3.2619 0.9938 -6.6177 18 6 3.4575 1.6613 -7.9475 19 6 3.9811 1.0820 -8.9798 20 6 4.4750 -0.3350 -8.9884 21 6 3.9001 -1.1008 -7.7947 22 6 4.2921 -2.0825 0.2141 23 6 3.8114 -2.9464 1.3818 24 6 4.6661 -1.7059 1.6492 25 1 -0.4851 0.8400 -0.0004 26 1 4.7286 -0.1891 -1.5719 27 1 3.0650 0.4308 -1.6989 28 1 2.4100 -1.5893 -2.9791 29 1 4.0738 -2.2093 -2.8521 30 1 4.1721 0.3777 -3.9807 31 1 2.2130 0.7211 -6.5013 32 1 3.5444 1.6833 -5.8223 33 1 3.1415 2.6890 -8.0495 34 1 4.0677 1.6539 -9.8919 35 1 5.5634 -0.3388 -8.9297 36 1 4.1613 -0.8193 -9.9131 37 1 4.4074 -2.0606 -7.6963 38 1 2.8320 -1.2608 -7.9420 39 1 5.0795 -2.4876 -0.4214 40 1 2.7546 -2.8958 1.6436 41 1 4.2825 -3.9204 1.5145 42 1 5.6995 -1.8637 1.9578 43 1 4.1716 -0.8389 2.0871 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663704919.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:44 Heat of formation + Delta-G solvation = -2.859051 kcal Electronic energy + Delta-G solvation = -21807.255862 eV Core-core repulsion = 18659.920726 eV Total energy + Delta-G solvation = -3147.335136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.20727 -39.14726 -38.53776 -36.41280 -34.99362 -33.40138 -32.26585 -31.68290 -29.40634 -26.31958 -25.00638 -24.10884 -23.31589 -22.89473 -21.53555 -21.22784 -18.86715 -18.72584 -17.96775 -17.46585 -17.34718 -16.74528 -16.42531 -16.04392 -15.48066 -15.30282 -14.80538 -14.68108 -14.42129 -14.30066 -14.09940 -13.92904 -13.57483 -13.43659 -13.12875 -13.11573 -12.70822 -12.52647 -12.11224 -12.00012 -11.84840 -11.74940 -11.71077 -11.34114 -11.30971 -11.01196 -10.73256 -10.62861 -10.08498 -9.87171 -8.68863 -8.23258 -5.64764 1.25742 1.41189 1.42425 1.52566 1.62015 2.14398 2.39051 3.00302 3.21941 3.32599 3.59000 3.72458 3.86287 4.11020 4.15084 4.26374 4.27527 4.28909 4.38441 4.40585 4.46476 4.47729 4.57380 4.62130 4.71845 4.90339 4.92337 4.94773 5.01773 5.03514 5.06085 5.12434 5.26071 5.29895 5.33705 5.45719 5.53659 5.77812 5.91570 6.06476 6.18909 6.55975 6.94773 7.25619 7.57831 7.97683 8.95760 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021026 B = 0.004314 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.365630 B = 6488.246500 C = 7187.124112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.016 4.016 3 Si 0.939 3.061 4 H -0.258 1.258 5 H -0.311 1.311 6 H -0.255 1.255 7 C -0.262 4.262 8 H 0.040 0.960 9 N -0.582 5.582 10 C 0.130 3.870 11 C 0.118 3.882 12 N -0.715 5.715 13 C 0.510 3.490 14 O -0.589 6.589 15 C -0.097 4.097 16 H 0.125 0.875 17 C -0.084 4.084 18 C -0.163 4.163 19 C -0.155 4.155 20 C -0.088 4.088 21 C -0.101 4.101 22 C 0.102 3.898 23 C -0.191 4.191 24 C -0.205 4.205 25 H 0.264 0.736 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.413 0.587 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.126 0.874 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.629 4.737 -14.883 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.213 4.213 3 Si 0.766 3.234 4 H -0.185 1.185 5 H -0.240 1.240 6 H -0.179 1.179 7 C -0.392 4.392 8 H 0.058 0.942 9 N -0.302 5.302 10 C 0.004 3.996 11 C -0.009 4.009 12 N -0.367 5.367 13 C 0.298 3.702 14 O -0.469 6.469 15 C -0.118 4.118 16 H 0.143 0.857 17 C -0.121 4.121 18 C -0.181 4.181 19 C -0.173 4.173 20 C -0.125 4.125 21 C -0.139 4.139 22 C -0.005 4.005 23 C -0.229 4.229 24 C -0.246 4.246 25 H 0.073 0.927 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.249 0.751 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 14.179 4.028 -14.956 20.999 hybrid contribution -0.668 0.932 0.634 1.310 sum 13.511 4.960 -14.321 20.304 Atomic orbital electron populations 1.70020 1.07958 1.27629 1.53162 1.26151 0.95593 1.01435 0.98133 0.85960 0.79379 0.79691 0.78347 1.18475 1.23952 1.17919 1.18530 0.88084 0.93225 1.39317 0.94187 1.43607 1.06566 1.52982 1.27011 1.21423 0.99892 0.93444 0.84802 1.21758 0.98721 0.95461 0.84947 1.45968 1.66329 1.18787 1.05652 1.21350 0.76658 0.86937 0.85302 1.90670 1.47841 1.21412 1.87002 1.21419 1.03111 0.95779 0.91501 0.85744 1.20435 0.99069 0.94784 0.97853 1.22033 1.01547 1.00460 0.94028 1.22285 0.99530 0.96733 0.98735 1.20514 1.01308 0.92843 0.97807 1.21413 1.01139 0.98190 0.93144 1.21537 0.94176 0.97293 0.87526 1.23043 0.99599 0.95515 1.04725 1.23338 0.99962 0.98091 1.03165 0.92746 0.89637 0.93472 0.95330 0.92257 0.75088 0.92255 0.89016 0.86292 0.86010 0.89158 0.89661 0.91713 0.93218 0.85677 0.91533 0.87080 0.86837 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.59 13.97 21.65 0.30 -58.29 16 2 C -0.02 -0.91 5.28 84.86 0.45 -0.47 16 3 Si 0.94 43.71 25.32 68.60 1.74 45.44 16 4 H -0.26 -10.84 6.52 99.48 0.65 -10.19 16 5 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.26 -14.56 8.93 84.03 0.75 -13.81 16 8 H 0.04 2.52 6.85 -2.91 -0.02 2.50 16 9 N -0.58 -26.25 2.38 -678.03 -1.61 -27.86 16 10 C 0.13 4.99 4.68 86.38 0.40 5.40 16 11 C 0.12 4.46 6.00 86.38 0.52 4.97 16 12 N -0.72 -21.28 5.47 -463.06 -2.53 -23.82 16 13 C 0.51 15.82 7.14 87.66 0.63 16.44 16 14 O -0.59 -23.99 15.90 -3.00 -0.05 -24.04 16 15 C -0.10 -2.09 2.57 -11.40 -0.03 -2.12 16 16 H 0.12 2.02 8.12 -2.39 -0.02 2.00 16 17 C -0.08 -1.65 5.29 29.66 0.16 -1.49 16 18 C -0.16 -2.64 9.80 27.04 0.27 -2.37 16 19 C -0.15 -2.25 9.80 27.04 0.27 -1.99 16 20 C -0.09 -1.30 6.12 29.66 0.18 -1.12 16 21 C -0.10 -2.18 4.69 30.74 0.14 -2.04 16 22 C 0.10 3.81 6.57 45.00 0.30 4.11 16 23 C -0.19 -7.04 9.80 30.60 0.30 -6.74 16 24 C -0.21 -7.16 10.35 30.60 0.32 -6.85 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H 0.09 2.65 8.07 -2.39 -0.02 2.63 16 27 H 0.05 1.97 3.45 -2.39 -0.01 1.96 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.41 9.37 8.19 -92.71 -0.76 8.61 16 31 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.09 1.51 7.93 -2.39 -0.02 1.50 16 33 H 0.12 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.53 7.90 -2.39 -0.02 1.51 16 38 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 39 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 40 H 0.07 2.97 6.44 -2.39 -0.02 2.95 16 41 H 0.11 3.33 8.14 -2.38 -0.02 3.31 16 42 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -72.00 343.54 2.66 -69.34 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.17 Total: 27.29 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.64 Total: -8.07 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.84 Total: -109.96 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.05 Total: -24.04 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.74 Total: 45.44 kcal Total: -72.00 2.66 -69.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704919.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.486 kcal (2) G-P(sol) polarization free energy of solvation -72.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds