Wall clock time and date at job start Tue Mar 31 2020 00:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47346 * 275.38793 * 3 2 1 5 5 H 1.48504 * 109.46839 * 35.38401 * 3 2 1 6 6 H 1.48496 * 109.47380 * 155.38317 * 3 2 1 7 7 C 1.38817 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99526 * 343.42057 * 7 2 1 9 9 N 1.36936 * 119.99755 * 163.69894 * 7 2 1 10 10 C 1.46496 * 119.99883 * 127.13528 * 9 7 2 11 11 C 1.52999 * 109.47195 * 89.99702 * 10 9 7 12 12 N 1.46505 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99611 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00700 * 359.97438 * 13 12 11 15 15 C 1.50710 * 119.99679 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.63776 * 300.41523 * 15 13 12 17 17 C 1.53021 * 109.64115 * 61.05403 * 15 13 12 18 18 C 1.50067 * 110.14374 * 169.12210 * 17 15 13 19 19 C 1.29444 * 124.07999 * 342.86815 * 18 17 15 20 20 C 1.50067 * 124.07039 * 0.46585 * 19 18 17 21 21 C 1.53021 * 110.15204 * 342.87219 * 20 19 18 22 22 C 1.46504 * 120.00058 * 307.13401 * 9 7 2 23 23 C 1.52998 * 117.49560 * 2.15329 * 22 9 7 24 24 C 1.53003 * 117.49795 * 293.49152 * 22 9 7 25 25 H 0.97002 * 120.00548 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47236 * 209.99761 * 10 9 7 27 27 H 1.09001 * 109.47504 * 329.99685 * 10 9 7 28 28 H 1.09001 * 109.47077 * 300.00157 * 11 10 9 29 29 H 1.09002 * 109.47057 * 60.00153 * 11 10 9 30 30 H 0.96990 * 119.99907 * 0.02562 * 12 11 10 31 31 H 1.09000 * 109.35347 * 289.32829 * 17 15 13 32 32 H 1.09000 * 109.35955 * 48.91354 * 17 15 13 33 33 H 1.08005 * 117.95867 * 162.84222 * 18 17 15 34 34 H 1.08000 * 117.96480 * 180.49306 * 19 18 17 35 35 H 1.08996 * 109.35996 * 222.66080 * 20 19 18 36 36 H 1.09009 * 109.24735 * 103.01118 * 20 19 18 37 37 H 1.09002 * 109.64033 * 289.75422 * 21 20 19 38 38 H 1.08999 * 109.64356 * 169.12131 * 21 20 19 39 39 H 1.08997 * 115.54662 * 147.82246 * 22 9 7 40 40 H 1.09001 * 117.50348 * 0.02562 * 23 22 9 41 41 H 1.09001 * 117.49964 * 145.02657 * 23 22 9 42 42 H 1.08994 * 117.50075 * 214.97683 * 24 22 9 43 43 H 1.09001 * 117.49640 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1122 -1.3939 5 1 1.5091 2.6171 0.8108 6 1 3.5999 1.4100 0.5832 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1181 0.2659 9 7 3.3383 -1.2259 -0.3334 10 6 4.3079 -1.8553 0.5665 11 6 4.4537 -3.3347 0.2048 12 7 5.4238 -3.9641 1.1044 13 6 5.7151 -5.2732 0.9718 14 8 5.1739 -5.9305 0.1081 15 6 6.7126 -5.9207 1.8976 16 1 7.6771 -5.4217 1.8036 17 6 6.2150 -5.8206 3.3411 18 6 7.0540 -6.6829 4.2380 19 6 7.8291 -7.6299 3.8160 20 6 8.0045 -7.9912 2.3701 21 6 6.8624 -7.4044 1.5378 22 6 3.7895 -0.6218 -1.5895 23 6 2.7362 0.0640 -2.4620 24 6 3.3321 -1.2784 -2.8936 25 1 -0.4851 0.8400 0.0004 26 1 5.2732 -1.3595 0.4647 27 1 3.9601 -1.7654 1.5956 28 1 3.4883 -3.8305 0.3067 29 1 4.8016 -3.4246 -0.8243 30 1 5.8563 -3.4385 1.7954 31 1 6.2779 -4.7845 3.6738 32 1 5.1774 -6.1511 3.3894 33 1 7.0087 -6.5018 5.3018 34 1 8.3836 -8.1954 4.5502 35 1 8.0066 -9.0762 2.2665 36 1 8.9540 -7.5924 2.0127 37 1 5.9356 -7.9316 1.7642 38 1 7.0938 -7.5027 0.4772 39 1 4.7880 -0.1851 -1.5691 40 1 1.7076 0.0661 -2.1012 41 1 3.0418 0.9515 -3.0160 42 1 4.0294 -1.2733 -3.7312 43 1 2.6951 -2.1596 -2.8169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663704920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:51 Heat of formation + Delta-G solvation = 17.029487 kcal Electronic energy + Delta-G solvation = -21683.021768 eV Core-core repulsion = 18536.549064 eV Total energy + Delta-G solvation = -3146.472704 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06551 -37.82823 -37.33050 -34.90005 -32.86542 -31.93148 -31.28835 -30.89239 -27.84549 -24.59292 -23.78260 -22.89872 -21.65193 -21.59592 -20.23477 -19.65304 -18.10995 -17.30279 -16.82960 -16.03537 -15.47883 -15.10907 -14.98751 -14.50537 -14.32022 -13.84747 -13.78208 -13.36705 -13.27675 -12.96748 -12.86198 -12.39585 -12.31961 -12.15164 -11.66819 -11.52312 -11.14602 -10.95623 -10.82034 -10.73900 -10.52893 -10.39614 -10.37213 -9.81379 -9.56119 -9.51882 -9.22458 -9.13793 -8.70395 -8.44593 -6.59533 -6.06894 -3.73289 2.06113 2.83614 3.35559 3.39708 3.45244 3.51980 4.44717 4.47899 4.49121 4.69940 4.84079 4.89369 5.02413 5.07886 5.11858 5.25843 5.29790 5.33889 5.46214 5.66073 5.70148 5.73827 5.75729 5.83778 5.84414 6.03537 6.03974 6.11421 6.16093 6.21370 6.41978 6.50038 6.54358 6.61706 6.62908 6.70998 6.86014 7.02757 7.29524 7.75175 8.03821 8.41385 8.47907 8.93873 9.58303 10.05125 11.03503 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.003557 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.371457 B = 7869.326326 C = 8260.018185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.271 1.271 5 H -0.304 1.304 6 H -0.270 1.270 7 C -0.289 4.289 8 H 0.072 0.928 9 N -0.568 5.568 10 C 0.143 3.857 11 C 0.098 3.902 12 N -0.724 5.724 13 C 0.512 3.488 14 O -0.542 6.542 15 C -0.107 4.107 16 H 0.096 0.904 17 C -0.083 4.083 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.092 4.092 21 C -0.100 4.100 22 C 0.107 3.893 23 C -0.199 4.199 24 C -0.212 4.212 25 H 0.266 0.734 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.396 0.604 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.590 -9.357 6.073 19.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.232 1.232 6 H -0.195 1.195 7 C -0.417 4.417 8 H 0.090 0.910 9 N -0.288 5.288 10 C 0.016 3.984 11 C -0.028 4.028 12 N -0.375 5.375 13 C 0.297 3.703 14 O -0.419 6.419 15 C -0.128 4.128 16 H 0.114 0.886 17 C -0.120 4.120 18 C -0.170 4.170 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.138 4.138 22 C 0.000 4.000 23 C -0.237 4.237 24 C -0.252 4.252 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.229 0.771 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.995 -9.705 5.476 19.494 hybrid contribution 0.512 1.208 0.322 1.351 sum 16.507 -8.496 5.799 19.450 Atomic orbital electron populations 1.69873 1.06282 1.27178 1.50072 1.25812 0.95007 0.98589 0.95202 0.86789 0.80291 0.83488 0.77984 1.19653 1.23235 1.19512 1.18573 0.83436 0.93616 1.46084 0.91026 1.43423 1.04433 1.65470 1.15488 1.21033 0.92814 0.89634 0.94901 1.22239 0.91663 0.95858 0.92991 1.46091 1.44963 1.09947 1.36544 1.20550 0.82868 0.82103 0.84740 1.90701 1.52710 1.62960 1.35564 1.21403 0.98849 0.97880 0.94719 0.88577 1.20424 0.99704 1.00032 0.91851 1.22008 0.98215 0.97304 0.99506 1.22086 0.99879 0.98384 0.97226 1.20505 0.98924 1.00975 0.92532 1.21420 0.99010 0.93106 1.00241 1.21317 0.95055 0.99792 0.83873 1.23568 1.01846 0.94436 1.03876 1.23384 1.04692 0.97227 0.99927 0.92454 0.94117 0.91929 0.91378 0.92100 0.77067 0.90340 0.90125 0.87647 0.87995 0.90789 0.90856 0.91089 0.90678 0.89474 0.86049 0.90631 0.91003 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.97 55.49 0.78 -25.59 16 2 C 0.06 1.57 3.68 -17.43 -0.06 1.50 16 3 Si 0.89 21.57 24.63 -169.99 -4.19 17.39 16 4 H -0.27 -6.31 5.76 56.52 0.33 -5.99 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.29 -7.79 9.25 -15.06 -0.14 -7.93 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 N -0.57 -12.98 2.11 -165.66 -0.35 -13.33 16 10 C 0.14 2.65 5.83 -4.04 -0.02 2.63 16 11 C 0.10 1.73 6.00 -4.04 -0.02 1.71 16 12 N -0.72 -10.08 5.47 -60.29 -0.33 -10.41 16 13 C 0.51 7.51 7.13 -10.98 -0.08 7.43 16 14 O -0.54 -10.37 15.91 5.55 0.09 -10.28 16 15 C -0.11 -1.14 2.58 -91.55 -0.24 -1.37 16 16 H 0.10 0.87 8.13 -51.93 -0.42 0.45 16 17 C -0.08 -0.77 5.29 -28.18 -0.15 -0.92 16 18 C -0.15 -1.29 9.80 -35.90 -0.35 -1.64 16 19 C -0.16 -1.28 9.80 -35.90 -0.35 -1.63 16 20 C -0.09 -0.76 6.12 -28.18 -0.17 -0.93 16 21 C -0.10 -1.06 4.69 -26.51 -0.12 -1.19 16 22 C 0.11 2.27 5.10 -67.93 -0.35 1.92 16 23 C -0.20 -4.37 6.58 -26.69 -0.18 -4.55 16 24 C -0.21 -4.28 10.38 -26.69 -0.28 -4.55 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 27 H 0.06 1.16 8.04 -51.93 -0.42 0.75 16 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.40 4.25 8.22 -40.82 -0.34 3.91 16 31 H 0.08 0.62 7.95 -51.93 -0.41 0.21 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.11 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 37 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 38 H 0.07 0.86 7.91 -51.93 -0.41 0.45 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.12 3.09 4.97 -51.93 -0.26 2.83 16 41 H 0.08 1.51 7.76 -51.93 -0.40 1.11 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -31.31 341.03 -8.74 -40.05 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.36 Total: 6.55 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -2.51 Total: -9.51 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.10 Total: -49.33 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.19 Total: 17.39 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.31 -8.74 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.080 kcal (2) G-P(sol) polarization free energy of solvation -31.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds