Wall clock time and date at job start Tue Mar 31 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48500 * 109.47346 * 275.38793 * 3 2 1 5 5 H 1.48504 * 109.46839 * 35.38401 * 3 2 1 6 6 H 1.48496 * 109.47380 * 155.38317 * 3 2 1 7 7 C 1.38817 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99526 * 343.42057 * 7 2 1 9 9 N 1.36936 * 119.99755 * 163.69894 * 7 2 1 10 10 C 1.46496 * 119.99883 * 127.13528 * 9 7 2 11 11 C 1.52999 * 109.47195 * 89.99702 * 10 9 7 12 12 N 1.46505 * 109.47186 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99611 * 180.02562 * 12 11 10 14 14 O 1.21287 * 120.00700 * 359.97438 * 13 12 11 15 15 C 1.50710 * 119.99679 * 180.02562 * 13 12 11 16 16 H 1.09001 * 109.63776 * 300.41523 * 15 13 12 17 17 C 1.53021 * 109.64115 * 61.05403 * 15 13 12 18 18 C 1.50067 * 110.14374 * 169.12210 * 17 15 13 19 19 C 1.29444 * 124.07999 * 342.86815 * 18 17 15 20 20 C 1.50067 * 124.07039 * 0.46585 * 19 18 17 21 21 C 1.53021 * 110.15204 * 342.87219 * 20 19 18 22 22 C 1.46504 * 120.00058 * 307.13401 * 9 7 2 23 23 C 1.52998 * 117.49560 * 2.15329 * 22 9 7 24 24 C 1.53003 * 117.49795 * 293.49152 * 22 9 7 25 25 H 0.97002 * 120.00548 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47236 * 209.99761 * 10 9 7 27 27 H 1.09001 * 109.47504 * 329.99685 * 10 9 7 28 28 H 1.09001 * 109.47077 * 300.00157 * 11 10 9 29 29 H 1.09002 * 109.47057 * 60.00153 * 11 10 9 30 30 H 0.96990 * 119.99907 * 0.02562 * 12 11 10 31 31 H 1.09000 * 109.35347 * 289.32829 * 17 15 13 32 32 H 1.09000 * 109.35955 * 48.91354 * 17 15 13 33 33 H 1.08005 * 117.95867 * 162.84222 * 18 17 15 34 34 H 1.08000 * 117.96480 * 180.49306 * 19 18 17 35 35 H 1.08996 * 109.35996 * 222.66080 * 20 19 18 36 36 H 1.09009 * 109.24735 * 103.01118 * 20 19 18 37 37 H 1.09002 * 109.64033 * 289.75422 * 21 20 19 38 38 H 1.08999 * 109.64356 * 169.12131 * 21 20 19 39 39 H 1.08997 * 115.54662 * 147.82246 * 22 9 7 40 40 H 1.09001 * 117.50348 * 0.02562 * 23 22 9 41 41 H 1.09001 * 117.49964 * 145.02657 * 23 22 9 42 42 H 1.08994 * 117.50075 * 214.97683 * 24 22 9 43 43 H 1.09001 * 117.49640 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3839 2.1122 -1.3939 5 1 1.5091 2.6171 0.8108 6 1 3.5999 1.4100 0.5832 7 6 2.0102 -1.2022 -0.0005 8 1 1.5038 -2.1181 0.2659 9 7 3.3383 -1.2259 -0.3334 10 6 4.3079 -1.8553 0.5665 11 6 4.4537 -3.3347 0.2048 12 7 5.4238 -3.9641 1.1044 13 6 5.7151 -5.2732 0.9718 14 8 5.1739 -5.9305 0.1081 15 6 6.7126 -5.9207 1.8976 16 1 7.6771 -5.4217 1.8036 17 6 6.2150 -5.8206 3.3411 18 6 7.0540 -6.6829 4.2380 19 6 7.8291 -7.6299 3.8160 20 6 8.0045 -7.9912 2.3701 21 6 6.8624 -7.4044 1.5378 22 6 3.7895 -0.6218 -1.5895 23 6 2.7362 0.0640 -2.4620 24 6 3.3321 -1.2784 -2.8936 25 1 -0.4851 0.8400 0.0004 26 1 5.2732 -1.3595 0.4647 27 1 3.9601 -1.7654 1.5956 28 1 3.4883 -3.8305 0.3067 29 1 4.8016 -3.4246 -0.8243 30 1 5.8563 -3.4385 1.7954 31 1 6.2779 -4.7845 3.6738 32 1 5.1774 -6.1511 3.3894 33 1 7.0087 -6.5018 5.3018 34 1 8.3836 -8.1954 4.5502 35 1 8.0066 -9.0762 2.2665 36 1 8.9540 -7.5924 2.0127 37 1 5.9356 -7.9316 1.7642 38 1 7.0938 -7.5027 0.4772 39 1 4.7880 -0.1851 -1.5691 40 1 1.7076 0.0661 -2.1012 41 1 3.0418 0.9515 -3.0160 42 1 4.0294 -1.2733 -3.7312 43 1 2.6951 -2.1596 -2.8169 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663704920.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:50 Heat of formation + Delta-G solvation = -2.970704 kcal Electronic energy + Delta-G solvation = -21683.889041 eV Core-core repulsion = 18536.549064 eV Total energy + Delta-G solvation = -3147.339977 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18326 -39.24467 -38.55312 -36.33714 -34.64416 -33.68604 -32.26625 -31.66881 -29.42000 -26.30557 -24.82836 -23.89269 -23.29293 -23.01194 -21.75056 -21.12771 -18.88363 -18.82095 -18.26750 -17.26862 -16.77346 -16.55178 -16.47115 -16.08616 -15.55213 -15.20623 -14.85093 -14.67236 -14.60073 -14.21373 -13.97771 -13.84379 -13.47982 -13.36316 -13.13771 -13.10270 -12.60653 -12.50723 -12.14347 -11.99177 -11.96375 -11.76842 -11.69696 -11.32782 -11.29247 -10.87443 -10.75025 -10.48140 -10.06417 -9.84971 -8.48948 -8.18108 -5.86309 1.44510 1.45026 1.47652 1.61047 1.64516 2.18370 2.46936 2.98461 3.21194 3.37211 3.61629 3.74891 3.88556 4.18065 4.20938 4.24729 4.29016 4.31321 4.33248 4.42100 4.47949 4.50241 4.63292 4.67329 4.74961 4.90024 4.93789 4.95233 5.04950 5.06912 5.07284 5.18302 5.27668 5.30766 5.34813 5.50095 5.53709 5.79861 5.96347 6.08571 6.24396 6.60708 7.05241 7.29964 7.55266 8.03170 8.94734 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.003557 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.371457 B = 7869.326326 C = 8260.018185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.252 1.252 5 H -0.315 1.315 6 H -0.253 1.253 7 C -0.283 4.283 8 H 0.019 0.981 9 N -0.582 5.582 10 C 0.145 3.855 11 C 0.117 3.883 12 N -0.710 5.710 13 C 0.509 3.491 14 O -0.593 6.593 15 C -0.096 4.096 16 H 0.124 0.876 17 C -0.082 4.082 18 C -0.161 4.161 19 C -0.158 4.158 20 C -0.088 4.088 21 C -0.102 4.102 22 C 0.101 3.899 23 C -0.212 4.212 24 C -0.200 4.200 25 H 0.266 0.734 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.416 0.584 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.652 -8.219 6.712 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.776 3.224 4 H -0.176 1.176 5 H -0.244 1.244 6 H -0.176 1.176 7 C -0.412 4.412 8 H 0.036 0.964 9 N -0.302 5.302 10 C 0.019 3.981 11 C -0.010 4.010 12 N -0.362 5.362 13 C 0.296 3.704 14 O -0.474 6.474 15 C -0.117 4.117 16 H 0.141 0.859 17 C -0.119 4.119 18 C -0.179 4.179 19 C -0.176 4.176 20 C -0.125 4.125 21 C -0.140 4.140 22 C -0.005 4.005 23 C -0.250 4.250 24 C -0.240 4.240 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.253 0.747 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 20.114 -8.571 6.139 22.710 hybrid contribution -0.803 0.697 0.081 1.066 sum 19.311 -7.874 6.220 21.763 Atomic orbital electron populations 1.70011 1.08312 1.27996 1.52442 1.26439 0.95414 1.02080 0.94814 0.85766 0.79293 0.78572 0.78776 1.17640 1.24407 1.17619 1.18257 0.85540 0.91815 1.45598 0.96379 1.43536 1.03506 1.66041 1.17114 1.21132 0.93465 0.89520 0.93982 1.21744 0.90517 0.95499 0.93194 1.45881 1.43974 1.10070 1.36321 1.21371 0.82753 0.81805 0.84445 1.90682 1.54718 1.64053 1.37911 1.21412 0.98475 0.97514 0.94316 0.85860 1.20431 0.98859 1.01534 0.91081 1.22066 0.98323 0.97478 1.00041 1.22270 0.99805 0.98129 0.97364 1.20504 0.98219 1.01509 0.92284 1.21414 0.99264 0.93249 1.00075 1.21685 0.96271 0.99582 0.82989 1.23485 1.00011 0.96344 1.05194 1.23337 1.04401 0.95189 1.01071 0.92543 0.90048 0.92097 0.95749 0.93281 0.74680 0.88497 0.92069 0.86156 0.86170 0.89840 0.89328 0.93181 0.92006 0.85466 0.90115 0.87912 0.87156 0.92265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.14 13.97 21.65 0.30 -57.84 16 2 C 0.01 0.62 3.68 84.86 0.31 0.93 16 3 Si 0.95 43.97 24.63 68.60 1.69 45.66 16 4 H -0.25 -10.79 5.76 99.48 0.57 -10.22 16 5 H -0.32 -15.06 7.11 99.48 0.71 -14.35 16 6 H -0.25 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.28 -15.80 9.25 84.03 0.78 -15.02 16 8 H 0.02 1.20 8.06 -2.91 -0.02 1.17 16 9 N -0.58 -26.14 2.11 -678.04 -1.43 -27.57 16 10 C 0.14 5.13 5.83 86.38 0.50 5.63 16 11 C 0.12 4.18 6.00 86.38 0.52 4.69 16 12 N -0.71 -19.01 5.47 -463.04 -2.53 -21.55 16 13 C 0.51 14.80 7.13 87.66 0.62 15.42 16 14 O -0.59 -23.51 15.91 -3.05 -0.05 -23.56 16 15 C -0.10 -1.89 2.58 -11.40 -0.03 -1.92 16 16 H 0.12 1.82 8.13 -2.39 -0.02 1.80 16 17 C -0.08 -1.38 5.29 29.66 0.16 -1.22 16 18 C -0.16 -2.30 9.80 27.04 0.27 -2.03 16 19 C -0.16 -2.11 9.80 27.04 0.27 -1.84 16 20 C -0.09 -1.24 6.12 29.66 0.18 -1.06 16 21 C -0.10 -2.11 4.69 30.73 0.14 -1.96 16 22 C 0.10 4.02 5.10 44.99 0.23 4.25 16 23 C -0.21 -8.91 6.58 30.62 0.20 -8.71 16 24 C -0.20 -7.73 10.38 30.62 0.32 -7.41 16 25 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 26 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 27 H 0.06 2.18 8.04 -2.39 -0.02 2.16 16 28 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.42 7.80 8.22 -92.72 -0.76 7.04 16 31 H 0.10 1.26 7.95 -2.39 -0.02 1.24 16 32 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 33 H 0.12 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.12 1.21 8.06 -2.91 -0.02 1.18 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 38 H 0.06 1.42 7.91 -2.39 -0.02 1.41 16 39 H 0.13 4.11 8.14 -2.39 -0.02 4.09 16 40 H 0.08 4.13 4.97 -2.39 -0.01 4.12 16 41 H 0.10 3.72 7.76 -2.39 -0.02 3.71 16 42 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 43 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -72.78 341.03 2.53 -70.25 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.08 Total: 24.86 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.47 Total: -10.25 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -3.66 Total: -106.96 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.69 Total: 45.66 kcal Total: -72.78 2.53 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663704920.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.278 kcal (2) G-P(sol) polarization free energy of solvation -72.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds