Wall clock time and date at job start Tue Mar 31 2020 00:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99692 * 2 1 4 4 H 1.48505 * 109.46798 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99935 * 3 2 1 6 6 H 1.48502 * 109.47006 * 150.00402 * 3 2 1 7 7 C 1.38811 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00090 * 159.80944 * 7 2 1 9 9 N 1.36939 * 119.99606 * 339.81900 * 7 2 1 10 10 C 1.46500 * 120.00107 * 321.07829 * 9 7 2 11 11 C 1.52998 * 109.46915 * 270.00274 * 10 9 7 12 12 N 1.46503 * 109.46918 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99960 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00023 * 180.02562 * 13 12 11 16 16 C 1.52994 * 119.30043 * 250.23818 * 15 13 12 17 17 C 1.53001 * 60.37972 * 248.69072 * 16 15 13 18 18 H 1.08999 * 119.30030 * 111.29944 * 17 16 15 19 19 C 1.54262 * 118.19952 * 266.38340 * 17 16 15 20 20 C 1.54896 * 104.19645 * 87.78435 * 19 17 16 21 21 C 1.54270 * 117.40930 * 44.57694 * 15 13 12 22 22 C 1.46505 * 119.99859 * 141.08101 * 9 7 2 23 23 C 1.52998 * 117.51733 * 345.87891 * 22 9 7 24 24 C 1.52995 * 117.49699 * 54.50767 * 22 9 7 25 25 H 0.96998 * 119.99836 * 355.05087 * 1 2 3 26 26 H 1.08999 * 109.46894 * 30.00278 * 10 9 7 27 27 H 1.08997 * 109.47053 * 150.00380 * 10 9 7 28 28 H 1.08997 * 109.47639 * 300.00161 * 11 10 9 29 29 H 1.09007 * 109.47230 * 60.00187 * 11 10 9 30 30 H 0.96998 * 120.00220 * 0.02562 * 12 11 10 31 31 H 1.09007 * 117.46174 * 356.28814 * 16 15 13 32 32 H 1.08996 * 117.46215 * 141.09326 * 16 15 13 33 33 H 1.08996 * 110.48959 * 206.46122 * 19 17 16 34 34 H 1.08994 * 110.48635 * 329.11066 * 19 17 16 35 35 H 1.09004 * 110.75491 * 80.37182 * 20 19 17 36 36 H 1.08997 * 110.75846 * 203.55815 * 20 19 17 37 37 H 1.09000 * 110.48355 * 235.04570 * 21 15 13 38 38 H 1.08997 * 110.48928 * 357.69347 * 21 15 13 39 39 H 1.08993 * 115.54757 * 200.17385 * 22 9 7 40 40 H 1.08995 * 117.49577 * 214.97036 * 23 22 9 41 41 H 1.08998 * 117.49972 * 359.97438 * 23 22 9 42 42 H 1.09006 * 117.50234 * 359.97438 * 24 22 9 43 43 H 1.09001 * 117.49797 * 144.99567 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0406 -1.2309 -0.3222 9 7 1.3888 -2.3514 0.4102 10 6 0.4658 -2.3197 1.5474 11 6 1.2406 -2.5815 2.8405 12 7 0.3177 -2.5492 3.9778 13 6 0.7799 -2.7558 5.2269 14 8 1.9600 -2.9681 5.4093 15 6 -0.1695 -2.7231 6.3967 16 6 -0.0967 -1.5598 7.3878 17 6 0.3239 -2.9613 7.8346 18 1 1.3742 -3.1605 8.0477 19 6 -0.7303 -3.8550 8.5199 20 6 -1.4341 -4.5805 7.3463 21 6 -1.5126 -3.4663 6.2424 22 6 1.6468 -3.6129 -0.2888 23 6 2.3433 -3.5377 -1.6489 24 6 3.1039 -4.0582 -0.4277 25 1 -0.4850 0.8369 0.0725 26 1 -0.0108 -1.3408 1.6013 27 1 -0.2962 -3.0882 1.4185 28 1 1.7172 -3.5603 2.7866 29 1 2.0027 -1.8129 2.9695 30 1 -0.6262 -2.3797 3.8318 31 1 0.6916 -0.8217 7.2395 32 1 -1.0379 -1.1700 7.7753 33 1 -0.2482 -4.5761 9.1800 34 1 -1.4440 -3.2461 9.0748 35 1 -0.8383 -5.4258 7.0017 36 1 -2.4327 -4.9066 7.6369 37 1 -2.3462 -2.7930 6.4422 38 1 -1.5985 -3.8957 5.2442 39 1 0.8943 -4.3891 -0.1509 40 1 2.0489 -4.2645 -2.4059 41 1 2.6093 -2.5495 -2.0242 42 1 3.8706 -3.4125 0.0005 43 1 3.3099 -5.1276 -0.3813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663739924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:37 Heat of formation + Delta-G solvation = 27.806346 kcal Electronic energy + Delta-G solvation = -21877.500564 eV Core-core repulsion = 18731.495180 eV Total energy + Delta-G solvation = -3146.005384 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.34937 -37.98900 -37.06629 -34.70991 -33.20553 -31.65587 -30.87925 -28.87911 -27.34333 -24.59565 -23.26009 -22.19277 -21.37049 -21.28673 -20.38032 -19.90638 -18.95465 -17.14114 -16.24948 -15.60764 -15.53025 -15.13697 -14.66705 -14.42158 -14.32525 -13.84568 -13.43015 -13.26488 -13.07783 -12.70717 -12.54234 -11.99090 -11.80035 -11.46323 -11.29060 -11.19843 -11.12014 -11.07766 -10.80413 -10.59044 -10.55090 -10.42886 -10.19635 -10.00627 -9.77132 -9.64669 -9.43794 -9.25470 -8.53120 -8.44327 -6.62144 -5.85731 -3.52636 2.81242 3.30615 3.39034 3.43700 3.48069 3.68045 4.32193 4.40531 4.52320 4.66113 4.93616 4.96578 5.08927 5.20727 5.26635 5.29057 5.32076 5.38836 5.53782 5.63084 5.68080 5.78032 5.88823 5.89554 5.93170 6.02597 6.08299 6.10221 6.18370 6.23171 6.33255 6.49093 6.51586 6.60247 6.88607 6.93570 7.04535 7.17483 7.46521 7.73513 7.97182 8.41060 8.63725 9.06950 9.67912 10.24878 11.08881 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.004419 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.977624 B = 6334.714780 C = 7120.903383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.017 3.983 3 Si 0.896 3.104 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.261 4.261 8 H 0.063 0.937 9 N -0.545 5.545 10 C 0.141 3.859 11 C 0.099 3.901 12 N -0.715 5.715 13 C 0.549 3.451 14 O -0.549 6.549 15 C -0.177 4.177 16 C -0.125 4.125 17 C -0.131 4.131 18 H 0.118 0.882 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.087 4.087 22 C 0.125 3.875 23 C -0.194 4.194 24 C -0.227 4.227 25 H 0.255 0.745 26 H 0.099 0.901 27 H 0.031 0.969 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.397 0.603 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.541 -6.485 12.876 15.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.184 4.184 3 Si 0.724 3.276 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.081 0.919 9 N -0.261 5.261 10 C 0.014 3.986 11 C -0.026 4.026 12 N -0.365 5.365 13 C 0.334 3.666 14 O -0.427 6.427 15 C -0.180 4.180 16 C -0.162 4.162 17 C -0.149 4.149 18 H 0.136 0.864 19 C -0.133 4.133 20 C -0.159 4.159 21 C -0.124 4.124 22 C 0.016 3.984 23 C -0.233 4.233 24 C -0.267 4.267 25 H 0.065 0.935 26 H 0.117 0.883 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.231 0.769 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.117 0.883 42 H 0.104 0.896 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.840 -6.471 12.888 15.212 hybrid contribution 0.175 0.979 -0.221 1.019 sum -4.665 -5.492 12.667 14.573 Atomic orbital electron populations 1.70056 1.05537 1.26311 1.50546 1.25196 0.95019 0.98829 0.99327 0.86429 0.79709 0.83475 0.77957 1.21030 1.21362 1.20168 1.18956 0.93666 0.85149 1.41266 0.91919 1.43185 1.50991 1.02980 1.28976 1.21026 0.90996 1.02947 0.83622 1.22335 0.93435 1.01072 0.85738 1.46022 1.12510 1.71528 1.06438 1.19293 0.87696 0.76346 0.83225 1.90671 1.17168 1.49612 1.85262 1.22422 0.98256 1.06130 0.91210 1.23093 1.03271 0.90909 0.98924 1.23334 1.00436 0.97301 0.93845 0.86405 1.21969 0.96496 0.97634 0.97193 1.23032 1.00342 0.97923 0.94649 1.22318 0.93758 0.96596 0.99764 1.21156 0.91660 0.90621 0.94966 1.23060 1.06645 1.02066 0.91546 1.23369 0.99712 0.99008 1.04658 0.93472 0.88319 0.95015 0.92986 0.91738 0.76891 0.87992 0.88164 0.91006 0.91180 0.91171 0.91169 0.90661 0.90543 0.89413 0.90791 0.88303 0.89639 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 11.49 55.49 0.64 -23.61 16 2 C 0.02 0.46 4.97 -17.43 -0.09 0.37 16 3 Si 0.90 21.21 29.60 -169.99 -5.03 16.17 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.91 8.01 -15.06 -0.12 -7.03 16 8 H 0.06 1.69 7.26 -52.49 -0.38 1.31 16 9 N -0.55 -13.16 2.78 -165.67 -0.46 -13.62 16 10 C 0.14 3.10 5.45 -4.04 -0.02 3.08 16 11 C 0.10 2.03 6.00 -4.04 -0.02 2.01 16 12 N -0.72 -12.20 5.38 -60.29 -0.32 -12.52 16 13 C 0.55 9.55 7.42 -10.98 -0.08 9.47 16 14 O -0.55 -11.76 16.79 5.56 0.09 -11.66 16 15 C -0.18 -2.29 2.63 -154.54 -0.41 -2.70 16 16 C -0.12 -1.41 9.85 -26.73 -0.26 -1.67 16 17 C -0.13 -1.52 6.55 -89.50 -0.59 -2.10 16 18 H 0.12 1.52 8.14 -51.93 -0.42 1.10 16 19 C -0.10 -0.85 6.63 -25.07 -0.17 -1.01 16 20 C -0.12 -1.10 6.96 -23.54 -0.16 -1.26 16 21 C -0.09 -0.89 6.34 -23.87 -0.15 -1.04 16 22 C 0.13 2.67 6.61 -67.93 -0.45 2.22 16 23 C -0.19 -3.90 9.81 -26.73 -0.26 -4.17 16 24 C -0.23 -4.42 10.09 -26.73 -0.27 -4.69 16 25 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 26 H 0.10 2.42 5.57 -51.93 -0.29 2.13 16 27 H 0.03 0.64 8.04 -51.93 -0.42 0.23 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.40 5.79 7.94 -40.82 -0.32 5.47 16 31 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.80 7.56 -51.93 -0.39 0.40 16 39 H 0.09 1.72 8.10 -51.93 -0.42 1.29 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.10 2.20 6.98 -51.93 -0.36 1.83 16 42 H 0.09 1.80 7.99 -51.93 -0.41 1.38 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 350.13 15.07 5.28 5.28 Total: -1.00 -30.11 350.13 -10.07 -40.18 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.21 Total: 8.31 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.05 Total: -8.53 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.15 Total: -49.75 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.11 -10.07 -40.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663739924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.989 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds