Wall clock time and date at job start Tue Mar 31 2020 00:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86806 * 119.99692 * 2 1 4 4 H 1.48505 * 109.46798 * 269.99821 * 3 2 1 5 5 H 1.48495 * 109.47087 * 29.99935 * 3 2 1 6 6 H 1.48502 * 109.47006 * 150.00402 * 3 2 1 7 7 C 1.38811 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00090 * 159.80944 * 7 2 1 9 9 N 1.36939 * 119.99606 * 339.81900 * 7 2 1 10 10 C 1.46500 * 120.00107 * 321.07829 * 9 7 2 11 11 C 1.52998 * 109.46915 * 270.00274 * 10 9 7 12 12 N 1.46503 * 109.46918 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99960 * 179.97438 * 12 11 10 14 14 O 1.21280 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.50701 * 120.00023 * 180.02562 * 13 12 11 16 16 C 1.52994 * 119.30043 * 250.23818 * 15 13 12 17 17 C 1.53001 * 60.37972 * 248.69072 * 16 15 13 18 18 H 1.08999 * 119.30030 * 111.29944 * 17 16 15 19 19 C 1.54262 * 118.19952 * 266.38340 * 17 16 15 20 20 C 1.54896 * 104.19645 * 87.78435 * 19 17 16 21 21 C 1.54270 * 117.40930 * 44.57694 * 15 13 12 22 22 C 1.46505 * 119.99859 * 141.08101 * 9 7 2 23 23 C 1.52998 * 117.51733 * 345.87891 * 22 9 7 24 24 C 1.52995 * 117.49699 * 54.50767 * 22 9 7 25 25 H 0.96998 * 119.99836 * 355.05087 * 1 2 3 26 26 H 1.08999 * 109.46894 * 30.00278 * 10 9 7 27 27 H 1.08997 * 109.47053 * 150.00380 * 10 9 7 28 28 H 1.08997 * 109.47639 * 300.00161 * 11 10 9 29 29 H 1.09007 * 109.47230 * 60.00187 * 11 10 9 30 30 H 0.96998 * 120.00220 * 0.02562 * 12 11 10 31 31 H 1.09007 * 117.46174 * 356.28814 * 16 15 13 32 32 H 1.08996 * 117.46215 * 141.09326 * 16 15 13 33 33 H 1.08996 * 110.48959 * 206.46122 * 19 17 16 34 34 H 1.08994 * 110.48635 * 329.11066 * 19 17 16 35 35 H 1.09004 * 110.75491 * 80.37182 * 20 19 17 36 36 H 1.08997 * 110.75846 * 203.55815 * 20 19 17 37 37 H 1.09000 * 110.48355 * 235.04570 * 21 15 13 38 38 H 1.08997 * 110.48928 * 357.69347 * 21 15 13 39 39 H 1.08993 * 115.54757 * 200.17385 * 22 9 7 40 40 H 1.08995 * 117.49577 * 214.97036 * 23 22 9 41 41 H 1.08998 * 117.49972 * 359.97438 * 23 22 9 42 42 H 1.09006 * 117.50234 * 359.97438 * 24 22 9 43 43 H 1.09001 * 117.49797 * 144.99567 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 0.0005 8 1 3.0406 -1.2309 -0.3222 9 7 1.3888 -2.3514 0.4102 10 6 0.4658 -2.3197 1.5474 11 6 1.2406 -2.5815 2.8405 12 7 0.3177 -2.5492 3.9778 13 6 0.7799 -2.7558 5.2269 14 8 1.9600 -2.9681 5.4093 15 6 -0.1695 -2.7231 6.3967 16 6 -0.0967 -1.5598 7.3878 17 6 0.3239 -2.9613 7.8346 18 1 1.3742 -3.1605 8.0477 19 6 -0.7303 -3.8550 8.5199 20 6 -1.4341 -4.5805 7.3463 21 6 -1.5126 -3.4663 6.2424 22 6 1.6468 -3.6129 -0.2888 23 6 2.3433 -3.5377 -1.6489 24 6 3.1039 -4.0582 -0.4277 25 1 -0.4850 0.8369 0.0725 26 1 -0.0108 -1.3408 1.6013 27 1 -0.2962 -3.0882 1.4185 28 1 1.7172 -3.5603 2.7866 29 1 2.0027 -1.8129 2.9695 30 1 -0.6262 -2.3797 3.8318 31 1 0.6916 -0.8217 7.2395 32 1 -1.0379 -1.1700 7.7753 33 1 -0.2482 -4.5761 9.1800 34 1 -1.4440 -3.2461 9.0748 35 1 -0.8383 -5.4258 7.0017 36 1 -2.4327 -4.9066 7.6369 37 1 -2.3462 -2.7930 6.4422 38 1 -1.5985 -3.8957 5.2442 39 1 0.8943 -4.3891 -0.1509 40 1 2.0489 -4.2645 -2.4059 41 1 2.6093 -2.5495 -2.0242 42 1 3.8706 -3.4125 0.0005 43 1 3.3099 -5.1276 -0.3813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663739924.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:36 Heat of formation + Delta-G solvation = 10.784530 kcal Electronic energy + Delta-G solvation = -21878.238686 eV Core-core repulsion = 18731.495180 eV Total energy + Delta-G solvation = -3146.743506 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.48677 -39.30783 -38.72857 -36.32942 -35.01014 -32.75135 -32.44577 -30.11739 -28.73543 -26.43780 -24.48702 -23.31589 -22.97507 -22.74757 -21.71265 -21.24998 -20.23384 -18.41358 -17.96339 -17.33862 -17.05749 -16.45488 -16.21882 -15.85582 -15.74520 -15.41060 -14.56048 -14.43428 -14.27474 -14.02597 -13.89584 -13.76747 -13.22196 -13.01824 -12.81637 -12.69954 -12.45266 -12.19858 -12.09370 -12.04194 -11.96578 -11.86976 -11.82432 -11.42288 -11.34662 -10.97731 -10.71526 -10.67428 -10.45735 -10.07270 -8.56827 -7.84738 -5.56630 1.39905 1.43862 1.49931 1.52747 2.12906 2.46345 2.64745 3.11544 3.41678 3.46014 3.52626 3.64575 3.77829 3.93649 4.23871 4.26943 4.32038 4.34992 4.42455 4.48835 4.49779 4.60781 4.63766 4.73034 4.76587 4.80102 4.93152 4.99256 5.00884 5.03065 5.16719 5.17888 5.19862 5.29105 5.31488 5.40831 5.48125 5.53290 5.61352 5.67323 6.39989 6.58783 7.09051 7.24754 7.75949 8.27369 9.04437 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.018800 B = 0.004419 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.977624 B = 6334.714780 C = 7120.903383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.023 4.023 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.267 4.267 8 H 0.049 0.951 9 N -0.563 5.563 10 C 0.150 3.850 11 C 0.122 3.878 12 N -0.706 5.706 13 C 0.543 3.457 14 O -0.597 6.597 15 C -0.192 4.192 16 C -0.114 4.114 17 C -0.131 4.131 18 H 0.095 0.905 19 C -0.088 4.088 20 C -0.120 4.120 21 C -0.083 4.083 22 C 0.101 3.899 23 C -0.189 4.189 24 C -0.210 4.210 25 H 0.255 0.745 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.412 0.588 31 H 0.085 0.915 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -7.377 13.956 17.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.221 4.221 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.397 4.397 8 H 0.067 0.933 9 N -0.280 5.280 10 C 0.023 3.977 11 C -0.005 4.005 12 N -0.357 5.357 13 C 0.331 3.669 14 O -0.479 6.479 15 C -0.196 4.196 16 C -0.151 4.151 17 C -0.150 4.150 18 H 0.114 0.886 19 C -0.125 4.125 20 C -0.157 4.157 21 C -0.120 4.120 22 C -0.007 4.007 23 C -0.228 4.228 24 C -0.251 4.251 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.046 0.954 30 H 0.248 0.752 31 H 0.104 0.896 32 H 0.151 0.849 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.585 -7.374 13.963 17.109 hybrid contribution 0.785 1.205 -0.565 1.545 sum -5.800 -6.169 13.398 15.849 Atomic orbital electron populations 1.70128 1.06280 1.26701 1.51645 1.25728 0.95702 1.00994 0.99694 0.85630 0.78408 0.80658 0.77830 1.20663 1.21051 1.20703 1.18998 0.93296 0.86529 1.40879 0.93338 1.43366 1.51251 1.03407 1.30020 1.20896 0.91032 1.02202 0.83589 1.21824 0.92944 0.99133 0.86566 1.45877 1.12732 1.71313 1.05788 1.20149 0.87855 0.74762 0.84130 1.90640 1.19590 1.51679 1.85982 1.22466 0.98956 1.08388 0.89742 1.23204 1.04217 0.90287 0.97388 1.23476 1.00396 0.98146 0.92996 0.88638 1.22004 0.95938 0.97427 0.97158 1.23043 1.01551 0.97004 0.94092 1.22393 0.92520 0.97018 1.00095 1.21469 0.93265 0.90129 0.95865 1.23048 1.06217 1.01587 0.91930 1.23311 0.97829 1.00365 1.03574 0.93580 0.90593 0.93145 0.93794 0.95429 0.75199 0.89632 0.84895 0.90227 0.88867 0.92549 0.88566 0.88293 0.91094 0.87196 0.87673 0.91039 0.91847 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.23 11.49 21.65 0.25 -49.98 16 2 C -0.02 -1.22 4.97 84.86 0.42 -0.80 16 3 Si 0.95 44.34 29.60 68.60 2.03 46.37 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 7 C -0.27 -14.46 8.01 84.03 0.67 -13.78 16 8 H 0.05 2.71 7.26 -2.91 -0.02 2.69 16 9 N -0.56 -27.52 2.78 -678.06 -1.88 -29.40 16 10 C 0.15 6.64 5.45 86.38 0.47 7.11 16 11 C 0.12 5.13 6.00 86.38 0.52 5.65 16 12 N -0.71 -24.38 5.38 -463.05 -2.49 -26.87 16 13 C 0.54 19.20 7.42 87.66 0.65 19.85 16 14 O -0.60 -26.65 16.79 -3.03 -0.05 -26.70 16 15 C -0.19 -4.77 2.63 -52.20 -0.14 -4.91 16 16 C -0.11 -2.38 9.85 30.59 0.30 -2.08 16 17 C -0.13 -2.89 6.55 -10.07 -0.07 -2.95 16 18 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 19 C -0.09 -1.29 6.63 31.67 0.21 -1.08 16 20 C -0.12 -1.79 6.96 32.66 0.23 -1.56 16 21 C -0.08 -1.47 6.34 32.45 0.21 -1.26 16 22 C 0.10 4.21 6.61 44.99 0.30 4.51 16 23 C -0.19 -7.39 9.81 30.59 0.30 -7.09 16 24 C -0.21 -7.97 10.09 30.59 0.31 -7.67 16 25 H 0.25 13.62 8.32 -92.71 -0.77 12.85 16 26 H 0.08 3.78 5.57 -2.39 -0.01 3.77 16 27 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 28 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.41 11.82 7.94 -92.71 -0.74 11.08 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.33 7.56 -2.39 -0.02 1.31 16 39 H 0.11 4.07 8.10 -2.39 -0.02 4.05 16 40 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 41 H 0.07 3.20 6.98 -2.39 -0.02 3.18 16 42 H 0.06 2.68 7.99 -2.38 -0.02 2.66 16 43 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -67.05 350.13 2.49 -64.56 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.25 Total: 28.08 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 4.38 Total: -6.07 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -4.12 Total: -106.25 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.05 2.49 -64.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663739924.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.344 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds