Wall clock time and date at job start Tue Mar 31 2020 00:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47125 * 300.00467 * 3 2 1 6 6 H 1.48505 * 109.46634 * 60.00080 * 3 2 1 7 7 C 1.38809 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49110 * 180.02562 * 9 7 2 11 11 C 1.53941 * 86.11438 * 155.35400 * 10 9 7 12 12 C 1.53007 * 113.74029 * 137.95232 * 11 10 9 13 13 N 1.46494 * 109.47146 * 176.92334 * 12 11 10 14 14 C 1.34780 * 119.99888 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99703 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00081 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47165 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.63832 * 54.57921 * 17 16 14 19 19 C 1.52871 * 109.87409 * 294.25683 * 17 16 14 20 20 C 1.50070 * 110.23038 * 190.99919 * 19 17 16 21 21 C 1.29452 * 124.07339 * 16.69650 * 20 19 17 22 22 C 1.50059 * 124.07349 * 359.78991 * 21 20 19 23 23 C 1.53022 * 110.14950 * 17.13248 * 22 21 20 24 24 C 1.47809 * 134.45659 * 359.86305 * 9 7 2 25 25 H 0.97006 * 120.00175 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.76679 * 41.05862 * 10 9 7 27 27 H 1.08992 * 113.76708 * 269.66195 * 10 9 7 28 28 H 1.09003 * 113.74528 * 269.15465 * 11 10 9 29 29 H 1.09003 * 109.46964 * 56.92042 * 12 11 10 30 30 H 1.09005 * 109.46515 * 296.92608 * 12 11 10 31 31 H 0.97001 * 120.00096 * 0.02562 * 13 12 11 32 32 H 1.09007 * 109.46722 * 60.00345 * 16 14 13 33 33 H 1.08992 * 109.47450 * 300.00443 * 16 14 13 34 34 H 1.09000 * 109.45706 * 70.68104 * 19 17 16 35 35 H 1.08992 * 109.17531 * 311.14027 * 19 17 16 36 36 H 1.08002 * 117.96604 * 196.98288 * 20 19 17 37 37 H 1.08001 * 117.96054 * 179.81381 * 21 20 19 38 38 H 1.09001 * 109.35841 * 137.33844 * 22 21 20 39 39 H 1.09000 * 109.35974 * 257.06125 * 22 21 20 40 40 H 1.09003 * 109.64238 * 70.24891 * 23 22 21 41 41 H 1.09005 * 109.64041 * 190.66482 * 23 22 21 42 42 H 1.09002 * 113.76657 * 90.38427 * 24 9 7 43 43 H 1.08996 * 113.84057 * 318.92458 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3471 -4.0829 0.6399 12 6 -0.3636 -5.3136 0.0730 13 7 -1.6200 -5.5279 0.7951 14 6 -2.4193 -6.5616 0.4648 15 8 -2.0980 -7.3147 -0.4299 16 6 -3.7121 -6.7817 1.2072 17 6 -4.4226 -8.0124 0.6404 18 1 -3.7494 -8.8691 0.6680 19 6 -4.8497 -7.7471 -0.8033 20 6 -5.7730 -8.8303 -1.2788 21 6 -6.3882 -9.6554 -0.4936 22 6 -6.2605 -9.6467 1.0016 23 6 -5.6752 -8.3137 1.4729 24 6 -0.1058 -2.7570 0.0025 25 1 -0.4851 0.8401 -0.0004 26 1 2.5624 -4.0323 0.6547 27 1 1.8319 -4.2350 -0.9980 28 1 0.3595 -4.0638 1.7297 29 1 0.2763 -6.1884 0.1896 30 1 -0.5746 -5.1561 -0.9847 31 1 -1.8771 -4.9253 1.5105 32 1 -4.3516 -5.9066 1.0905 33 1 -3.5015 -6.9392 2.2649 34 1 -3.9677 -7.7174 -1.4432 35 1 -5.3629 -6.7869 -0.8541 36 1 -5.9306 -8.9307 -2.3425 37 1 -7.0332 -10.3962 -0.9425 38 1 -7.2444 -9.7877 1.4490 39 1 -5.6025 -10.4581 1.3127 40 1 -6.4093 -7.5206 1.3308 41 1 -5.4099 -8.3827 2.5279 42 1 -0.5320 -2.8718 -0.9942 43 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665317811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:52 Heat of formation + Delta-G solvation = 10.643793 kcal Electronic energy + Delta-G solvation = -21169.577491 eV Core-core repulsion = 18022.827882 eV Total energy + Delta-G solvation = -3146.749609 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.98955 -38.49037 -37.76049 -34.34776 -32.91730 -32.15481 -30.88049 -29.16585 -27.40433 -25.47062 -24.78133 -23.35626 -22.12965 -21.33444 -20.20761 -18.93157 -18.08451 -16.89927 -16.58894 -16.24879 -15.69660 -15.41830 -14.88307 -14.49261 -14.30677 -13.95652 -13.63678 -13.31105 -13.09349 -12.93182 -12.63048 -12.46066 -12.31102 -12.16096 -11.68514 -11.40139 -11.32725 -11.01049 -10.83231 -10.73549 -10.68272 -10.56074 -10.28469 -9.97404 -9.74941 -9.56966 -9.39812 -9.06551 -8.81744 -8.76065 -6.88832 -5.78230 -3.10236 2.19418 2.80570 3.37295 3.39009 3.43421 3.45758 4.44280 4.49356 4.55274 4.67242 4.93774 5.02139 5.12213 5.20656 5.22141 5.32248 5.35016 5.37034 5.46239 5.53239 5.60902 5.65043 5.68875 5.69604 5.82565 5.84788 6.03338 6.05958 6.17032 6.26159 6.30085 6.37105 6.55000 6.57385 6.65393 6.77230 6.87346 7.20794 7.34642 7.54068 7.71529 7.96883 8.41237 9.03630 9.69722 10.58866 11.39044 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039591 B = 0.002730 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.060433 B =10253.636705 C =10491.304312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.614 5.614 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.130 3.870 13 N -0.724 5.724 14 C 0.509 3.491 15 O -0.545 6.545 16 C -0.139 4.139 17 C -0.069 4.069 18 H 0.079 0.921 19 C -0.094 4.094 20 C -0.143 4.143 21 C -0.170 4.170 22 C -0.088 4.088 23 C -0.117 4.117 24 C 0.169 3.831 25 H 0.253 0.747 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.172 -17.087 4.106 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.098 0.902 9 N -0.340 5.340 10 C 0.001 3.999 11 C -0.173 4.173 12 C 0.006 3.994 13 N -0.375 5.375 14 C 0.295 3.705 15 O -0.423 6.423 16 C -0.179 4.179 17 C -0.088 4.088 18 H 0.098 0.902 19 C -0.131 4.131 20 C -0.161 4.161 21 C -0.188 4.188 22 C -0.125 4.125 23 C -0.154 4.154 24 C 0.044 3.956 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.236 0.764 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.872 -17.259 3.450 21.230 hybrid contribution 0.300 1.277 0.091 1.315 sum -11.573 -15.982 3.541 20.047 Atomic orbital electron populations 1.69823 1.05005 1.25184 1.56917 1.24787 0.95705 0.97541 1.02571 0.86044 0.78752 0.83704 0.77259 1.20463 1.21748 1.21708 1.19084 0.90324 0.82014 1.43494 0.90207 1.46002 1.02495 0.99319 1.86164 1.22490 0.94060 0.86447 0.96876 1.23791 0.98185 0.94819 1.00486 1.21424 0.83830 0.97833 0.96331 1.46117 1.22573 1.30090 1.38698 1.20665 0.85480 0.80525 0.83839 1.90655 1.74437 1.45869 1.31375 1.21777 0.94779 1.00519 1.00785 1.20898 0.95947 0.97202 0.94786 0.90229 1.20622 0.99161 0.96871 0.96444 1.22128 0.97579 0.97150 0.99213 1.21987 1.01128 1.00163 0.95540 1.20406 1.00885 0.97879 0.93345 1.21685 0.97176 0.97437 0.99135 1.22341 0.88066 0.88476 0.96744 0.93733 0.93693 0.94662 0.89277 0.92104 0.91532 0.76445 0.88807 0.88911 0.88942 0.91334 0.88239 0.88396 0.91321 0.91100 0.91668 0.91600 0.95539 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 11.39 55.49 0.63 -26.56 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -6.24 10.70 -15.06 -0.16 -6.40 16 8 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 9 N -0.61 -15.71 3.70 -177.73 -0.66 -16.37 16 10 C 0.13 2.58 8.51 -2.97 -0.03 2.55 16 11 C -0.15 -2.70 3.93 -89.70 -0.35 -3.06 16 12 C 0.13 2.00 5.51 -4.04 -0.02 1.98 16 13 N -0.72 -9.49 5.56 -60.29 -0.33 -9.83 16 14 C 0.51 6.74 7.59 -10.98 -0.08 6.66 16 15 O -0.55 -9.12 14.08 5.56 0.08 -9.04 16 16 C -0.14 -1.31 5.18 -27.88 -0.14 -1.45 16 17 C -0.07 -0.69 1.86 -90.48 -0.17 -0.86 16 18 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 19 C -0.09 -1.04 5.06 -28.25 -0.14 -1.18 16 20 C -0.14 -1.45 9.81 -35.90 -0.35 -1.80 16 21 C -0.17 -1.55 9.80 -35.91 -0.35 -1.90 16 22 C -0.09 -0.70 6.11 -28.18 -0.17 -0.87 16 23 C -0.12 -0.93 5.31 -26.52 -0.14 -1.07 16 24 C 0.17 3.86 7.08 -2.85 -0.02 3.84 16 25 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.13 7.88 -51.93 -0.41 0.72 16 31 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 32 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.24 6.30 -51.93 -0.33 0.92 16 35 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 36 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.10 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 43 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 LS Contribution 344.87 15.07 5.20 5.20 Total: -1.00 -32.40 344.87 -9.65 -42.05 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.31 Total: 1.39 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -2.23 Total: -3.94 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.36 Total: -52.76 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.40 -9.65 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665317811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.692 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds