Wall clock time and date at job start Tue Mar 31 2020 00:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00053 * 2 1 4 4 H 1.48494 * 109.47018 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47125 * 300.00467 * 3 2 1 6 6 H 1.48505 * 109.46634 * 60.00080 * 3 2 1 7 7 C 1.38809 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99969 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49110 * 180.02562 * 9 7 2 11 11 C 1.53941 * 86.11438 * 155.35400 * 10 9 7 12 12 C 1.53007 * 113.74029 * 137.95232 * 11 10 9 13 13 N 1.46494 * 109.47146 * 176.92334 * 12 11 10 14 14 C 1.34780 * 119.99888 * 179.97438 * 13 12 11 15 15 O 1.21279 * 119.99703 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00081 * 180.02562 * 14 13 12 17 17 C 1.52998 * 109.47165 * 180.02562 * 16 14 13 18 18 H 1.08993 * 109.63832 * 54.57921 * 17 16 14 19 19 C 1.52871 * 109.87409 * 294.25683 * 17 16 14 20 20 C 1.50070 * 110.23038 * 190.99919 * 19 17 16 21 21 C 1.29452 * 124.07339 * 16.69650 * 20 19 17 22 22 C 1.50059 * 124.07349 * 359.78991 * 21 20 19 23 23 C 1.53022 * 110.14950 * 17.13248 * 22 21 20 24 24 C 1.47809 * 134.45659 * 359.86305 * 9 7 2 25 25 H 0.97006 * 120.00175 * 0.02562 * 1 2 3 26 26 H 1.09005 * 113.76679 * 41.05862 * 10 9 7 27 27 H 1.08992 * 113.76708 * 269.66195 * 10 9 7 28 28 H 1.09003 * 113.74528 * 269.15465 * 11 10 9 29 29 H 1.09003 * 109.46964 * 56.92042 * 12 11 10 30 30 H 1.09005 * 109.46515 * 296.92608 * 12 11 10 31 31 H 0.97001 * 120.00096 * 0.02562 * 13 12 11 32 32 H 1.09007 * 109.46722 * 60.00345 * 16 14 13 33 33 H 1.08992 * 109.47450 * 300.00443 * 16 14 13 34 34 H 1.09000 * 109.45706 * 70.68104 * 19 17 16 35 35 H 1.08992 * 109.17531 * 311.14027 * 19 17 16 36 36 H 1.08002 * 117.96604 * 196.98288 * 20 19 17 37 37 H 1.08001 * 117.96054 * 179.81381 * 21 20 19 38 38 H 1.09001 * 109.35841 * 137.33844 * 22 21 20 39 39 H 1.09000 * 109.35974 * 257.06125 * 22 21 20 40 40 H 1.09003 * 109.64238 * 70.24891 * 23 22 21 41 41 H 1.09005 * 109.64041 * 190.66482 * 23 22 21 42 42 H 1.09002 * 113.76657 * 90.38427 * 24 9 7 43 43 H 1.08996 * 113.84057 * 318.92458 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.7201 -3.8102 -0.0005 11 6 0.3471 -4.0829 0.6399 12 6 -0.3636 -5.3136 0.0730 13 7 -1.6200 -5.5279 0.7951 14 6 -2.4193 -6.5616 0.4648 15 8 -2.0980 -7.3147 -0.4299 16 6 -3.7121 -6.7817 1.2072 17 6 -4.4226 -8.0124 0.6404 18 1 -3.7494 -8.8691 0.6680 19 6 -4.8497 -7.7471 -0.8033 20 6 -5.7730 -8.8303 -1.2788 21 6 -6.3882 -9.6554 -0.4936 22 6 -6.2605 -9.6467 1.0016 23 6 -5.6752 -8.3137 1.4729 24 6 -0.1058 -2.7570 0.0025 25 1 -0.4851 0.8401 -0.0004 26 1 2.5624 -4.0323 0.6547 27 1 1.8319 -4.2350 -0.9980 28 1 0.3595 -4.0638 1.7297 29 1 0.2763 -6.1884 0.1896 30 1 -0.5746 -5.1561 -0.9847 31 1 -1.8771 -4.9253 1.5105 32 1 -4.3516 -5.9066 1.0905 33 1 -3.5015 -6.9392 2.2649 34 1 -3.9677 -7.7174 -1.4432 35 1 -5.3629 -6.7869 -0.8541 36 1 -5.9306 -8.9307 -2.3425 37 1 -7.0332 -10.3962 -0.9425 38 1 -7.2444 -9.7877 1.4490 39 1 -5.6025 -10.4581 1.3127 40 1 -6.4093 -7.5206 1.3308 41 1 -5.4099 -8.3827 2.5279 42 1 -0.5320 -2.8718 -0.9942 43 1 -0.7184 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665317811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:51 Heat of formation + Delta-G solvation = -9.231559 kcal Electronic energy + Delta-G solvation = -21170.439351 eV Core-core repulsion = 18022.827882 eV Total energy + Delta-G solvation = -3147.611469 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.03157 -39.82752 -38.91860 -35.66763 -34.17752 -33.67309 -31.57231 -30.72420 -28.65648 -26.96066 -26.52055 -24.17265 -23.68555 -22.26961 -21.35498 -20.42697 -18.83567 -18.75464 -17.77862 -17.23110 -16.98644 -16.67468 -16.36362 -15.77967 -15.51153 -15.21419 -14.80985 -14.57280 -14.37774 -13.99369 -13.75413 -13.48929 -13.30947 -13.15336 -13.10249 -12.92872 -12.87014 -12.52605 -12.37187 -12.20427 -11.81998 -11.61045 -11.53803 -11.45488 -11.26813 -10.98289 -10.88891 -10.58809 -9.97327 -9.79530 -8.92364 -7.91338 -5.24569 1.45216 1.45419 1.46392 1.56649 1.76759 2.32335 2.47173 3.29729 3.39450 3.70945 3.76082 3.84481 3.91652 4.08859 4.18681 4.32528 4.36923 4.46343 4.52434 4.61339 4.63368 4.77867 4.77998 4.82342 4.86366 4.86400 4.89593 5.00820 5.08696 5.10967 5.15648 5.25432 5.27240 5.41814 5.50303 5.55169 5.57983 5.66391 5.82746 5.93839 6.12445 6.68171 6.92141 7.37703 7.60155 8.55995 9.25681 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.039591 B = 0.002730 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.060433 B =10253.636705 C =10491.304312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.235 4.235 8 H 0.083 0.917 9 N -0.647 5.647 10 C 0.124 3.876 11 C -0.113 4.113 12 C 0.142 3.858 13 N -0.720 5.720 14 C 0.505 3.495 15 O -0.583 6.583 16 C -0.131 4.131 17 C -0.068 4.068 18 H 0.061 0.939 19 C -0.093 4.093 20 C -0.168 4.168 21 C -0.162 4.162 22 C -0.093 4.093 23 C -0.112 4.112 24 C 0.167 3.833 25 H 0.248 0.752 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.413 0.587 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.009 0.991 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.557 -17.988 5.834 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.373 5.373 10 C -0.001 4.001 11 C -0.133 4.133 12 C 0.017 3.983 13 N -0.371 5.371 14 C 0.294 3.706 15 O -0.464 6.464 16 C -0.170 4.170 17 C -0.087 4.087 18 H 0.079 0.921 19 C -0.130 4.130 20 C -0.186 4.186 21 C -0.180 4.180 22 C -0.129 4.129 23 C -0.149 4.149 24 C 0.041 3.959 25 H 0.057 0.943 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.249 0.751 32 H 0.129 0.871 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.250 -18.186 5.198 22.534 hybrid contribution 0.422 1.479 -0.493 1.616 sum -11.828 -16.706 4.705 21.003 Atomic orbital electron populations 1.70001 1.06369 1.25524 1.58283 1.25636 0.96643 1.00868 1.03046 0.85001 0.78177 0.79359 0.76734 1.19023 1.22138 1.21605 1.19475 0.90866 0.83466 1.42535 0.89937 1.46440 1.03895 1.00712 1.86268 1.22702 0.95937 0.83549 0.97900 1.23385 0.96114 0.92974 1.00809 1.21113 0.84943 0.96862 0.95348 1.46045 1.21852 1.30490 1.38757 1.21374 0.86321 0.79591 0.83360 1.90651 1.75427 1.47197 1.33124 1.21823 0.92564 1.00957 1.01667 1.20866 0.96668 0.96699 0.94424 0.92097 1.20542 0.98058 0.97433 0.96953 1.22154 0.98767 0.98073 0.99569 1.22265 1.00000 0.99260 0.96477 1.20507 1.02026 0.98053 0.92347 1.21672 0.95973 0.97546 0.99721 1.22254 0.86860 0.90963 0.95791 0.94266 0.91973 0.93783 0.87685 0.91024 0.93419 0.75062 0.87104 0.85960 0.92134 0.91243 0.88390 0.87215 0.89479 0.90666 0.91223 0.89644 0.97283 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.30 11.39 21.65 0.25 -57.06 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.98 45.78 29.55 68.60 2.03 47.81 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 6 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 7 C -0.24 -13.27 10.70 84.03 0.90 -12.37 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.44 16 9 N -0.65 -33.17 3.70 -716.22 -2.65 -35.83 16 10 C 0.12 4.87 8.51 86.48 0.74 5.60 16 11 C -0.11 -3.87 3.93 -10.14 -0.04 -3.91 16 12 C 0.14 4.23 5.51 86.38 0.48 4.70 16 13 N -0.72 -17.84 5.56 -463.05 -2.57 -20.42 16 14 C 0.51 12.87 7.59 87.66 0.67 13.54 16 15 O -0.58 -19.63 14.08 -3.03 -0.04 -19.68 16 16 C -0.13 -2.18 5.18 29.85 0.15 -2.02 16 17 C -0.07 -1.26 1.86 -10.71 -0.02 -1.27 16 18 H 0.06 1.37 7.93 -2.39 -0.02 1.35 16 19 C -0.09 -2.07 5.06 29.61 0.15 -1.92 16 20 C -0.17 -3.39 9.81 27.03 0.27 -3.12 16 21 C -0.16 -2.72 9.80 27.03 0.26 -2.45 16 22 C -0.09 -1.23 6.11 29.65 0.18 -1.05 16 23 C -0.11 -1.47 5.31 30.73 0.16 -1.31 16 24 C 0.17 7.72 7.08 86.44 0.61 8.33 16 25 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 26 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 27 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 28 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 1.62 7.88 -2.38 -0.02 1.60 16 31 H 0.41 8.37 8.47 -92.71 -0.79 7.58 16 32 H 0.11 1.53 8.10 -2.38 -0.02 1.51 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.72 6.30 -2.39 -0.02 1.71 16 35 H 0.07 1.46 8.07 -2.39 -0.02 1.44 16 36 H 0.10 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.11 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 41 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.01 0.46 7.92 -2.39 -0.02 0.44 16 43 H 0.05 2.35 7.17 -2.39 -0.02 2.33 16 Total: -1.00 -71.34 344.87 2.17 -69.16 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.19 Total: 16.74 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 4.97 Total: -0.74 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -4.98 Total: -113.30 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.68 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.34 2.17 -69.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665317811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.932 kcal (2) G-P(sol) polarization free energy of solvation -71.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds