Wall clock time and date at job start Tue Mar 31 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47286 * 355.35894 * 3 2 1 5 5 H 1.48502 * 109.46836 * 115.35771 * 3 2 1 6 6 H 1.48499 * 109.47355 * 235.35563 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99719 * 352.27359 * 7 2 1 9 9 N 1.36934 * 119.99840 * 172.28268 * 7 2 1 10 10 C 1.47063 * 136.05810 * 6.40941 * 9 7 2 11 11 C 1.53762 * 87.88643 * 152.96713 * 10 9 7 12 12 C 1.52996 * 114.39231 * 272.67330 * 11 10 9 13 13 N 1.46498 * 109.47287 * 268.58636 * 12 11 10 14 14 C 1.34776 * 120.00140 * 180.02562 * 13 12 11 15 15 O 1.21289 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47283 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.63916 * 305.00563 * 17 16 14 19 19 C 1.53024 * 109.63722 * 65.41817 * 17 16 14 20 20 C 1.50171 * 110.09077 * 168.90410 * 19 17 16 21 21 C 1.29441 * 124.14559 * 343.28760 * 20 19 17 22 22 C 1.50069 * 124.08185 * 0.23786 * 21 20 19 23 23 C 1.53025 * 110.14363 * 342.87270 * 22 21 20 24 24 C 1.47064 * 136.05375 * 186.78455 * 9 7 2 25 25 H 0.97001 * 119.99866 * 184.86089 * 1 2 3 26 26 H 1.09006 * 113.46603 * 267.69230 * 10 9 7 27 27 H 1.08994 * 113.46732 * 38.13815 * 10 9 7 28 28 H 1.09003 * 114.08461 * 139.77736 * 11 10 9 29 29 H 1.09001 * 109.46911 * 28.59078 * 12 11 10 30 30 H 1.08999 * 109.46964 * 148.58663 * 12 11 10 31 31 H 0.96999 * 119.99803 * 0.02562 * 13 12 11 32 32 H 1.08992 * 109.47463 * 300.00024 * 16 14 13 33 33 H 1.08999 * 109.46956 * 60.00028 * 16 14 13 34 34 H 1.08994 * 109.36271 * 289.32566 * 19 17 16 35 35 H 1.08996 * 109.35860 * 48.92139 * 19 17 16 36 36 H 1.07998 * 117.89126 * 163.03744 * 20 19 17 37 37 H 1.08005 * 117.96313 * 180.21491 * 21 20 19 38 38 H 1.08990 * 109.36161 * 222.66569 * 22 21 20 39 39 H 1.09005 * 109.24651 * 103.00189 * 22 21 20 40 40 H 1.09001 * 109.64284 * 289.74747 * 23 22 21 41 41 H 1.08997 * 109.64427 * 169.11712 * 23 22 21 42 42 H 1.09005 * 113.47262 * 321.85982 * 24 9 7 43 43 H 1.09007 * 113.47048 * 92.24273 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2891 2.7442 -0.1133 5 1 3.0169 1.7466 1.2652 6 1 3.1870 1.6486 -1.1518 7 6 2.0103 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1248 9 7 3.3703 -1.2074 -0.1598 10 6 4.4313 -0.1920 -0.2377 11 6 5.4058 -1.2508 0.3041 12 6 5.4698 -1.3283 1.8308 13 7 6.5279 -0.4415 2.3209 14 6 6.7687 -0.3466 3.6436 15 8 6.1090 -0.9949 4.4281 16 6 7.8575 0.5652 4.1477 17 6 7.9214 0.4877 5.6744 18 1 6.9405 0.7113 6.0940 19 6 8.3550 -0.9166 6.1004 20 6 8.6825 -0.9331 7.5659 21 6 8.9059 0.1283 8.2724 22 6 8.8641 1.5257 7.7271 23 6 8.9492 1.4980 6.1994 24 6 4.4120 -2.2307 -0.3348 25 1 -0.4850 -0.8370 0.0712 26 1 4.6560 0.1237 -1.2565 27 1 4.2792 0.6476 0.4405 28 1 6.3870 -1.2364 -0.1704 29 1 4.5127 -1.0187 2.2507 30 1 5.6851 -2.3529 2.1338 31 1 7.0552 0.0772 1.6934 32 1 8.8143 0.2554 3.7275 33 1 7.6424 1.5899 3.8449 34 1 7.5478 -1.6207 5.8990 35 1 9.2378 -1.2100 5.5325 36 1 8.7306 -1.8911 8.0621 37 1 9.1365 0.0002 9.3198 38 1 9.7042 2.0944 8.1254 39 1 7.9306 2.0012 8.0283 40 1 9.9505 1.1945 5.8937 41 1 8.7259 2.4881 5.8020 42 1 4.2435 -3.1280 0.2607 43 1 4.6309 -2.4531 -1.3793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665317812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:56 Heat of formation + Delta-G solvation = 21.245486 kcal Electronic energy + Delta-G solvation = -21581.165538 eV Core-core repulsion = 18434.875654 eV Total energy + Delta-G solvation = -3146.289885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.05378 -38.88363 -38.01883 -34.38481 -32.93447 -32.35961 -30.89138 -29.26470 -27.57229 -25.49178 -25.37359 -23.36371 -21.97521 -21.41637 -20.21827 -19.01376 -18.10757 -17.45592 -16.77033 -16.31946 -15.87700 -15.45668 -15.07288 -14.84284 -14.30122 -14.00076 -13.68963 -13.58045 -13.15078 -13.08005 -12.81686 -12.51585 -12.47949 -12.21216 -11.78402 -11.62871 -11.58207 -11.10909 -10.85211 -10.77107 -10.71298 -10.41087 -10.29944 -10.25830 -9.59462 -9.22509 -9.15802 -9.08268 -8.84770 -8.78331 -7.13356 -6.30511 -3.20839 2.18180 2.78707 3.31263 3.39074 3.43862 3.64540 4.47137 4.53109 4.59968 4.63686 4.75470 4.89355 4.97477 5.00463 5.11892 5.19704 5.20008 5.31241 5.43569 5.49707 5.51049 5.55206 5.66502 5.69549 5.75324 5.79923 5.91121 6.01384 6.12862 6.16126 6.22654 6.25654 6.29087 6.36183 6.41881 6.53489 6.61113 6.84450 6.86410 7.12635 7.65770 8.25827 8.38928 8.99609 9.52104 10.37906 11.22451 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.003568 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.870813 B = 7844.956989 C = 8193.628746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.026 4.026 3 Si 1.072 2.928 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.304 4.304 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.102 3.898 11 C -0.147 4.147 12 C 0.146 3.854 13 N -0.729 5.729 14 C 0.508 3.492 15 O -0.538 6.538 16 C -0.137 4.137 17 C -0.072 4.072 18 H 0.081 0.919 19 C -0.093 4.093 20 C -0.145 4.145 21 C -0.168 4.168 22 C -0.089 4.089 23 C -0.116 4.116 24 C 0.131 3.869 25 H 0.261 0.739 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.398 0.602 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.145 2.242 9.936 25.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.224 4.224 3 Si 0.905 3.095 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.215 1.215 7 C -0.431 4.431 8 H 0.100 0.900 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.167 4.167 12 C 0.023 3.977 13 N -0.380 5.380 14 C 0.294 3.706 15 O -0.415 6.415 16 C -0.177 4.177 17 C -0.091 4.091 18 H 0.100 0.900 19 C -0.130 4.130 20 C -0.163 4.163 21 C -0.186 4.186 22 C -0.126 4.126 23 C -0.153 4.153 24 C 0.004 3.996 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.231 0.769 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.165 3.389 10.473 24.748 hybrid contribution 0.393 -1.525 -0.368 1.618 sum 22.558 1.864 10.105 24.788 Atomic orbital electron populations 1.70916 1.05348 1.29442 1.52062 1.25723 0.96465 1.00968 0.99294 0.83665 0.73762 0.76004 0.76021 1.22304 1.22249 1.21466 1.20132 0.78784 0.95813 1.48321 0.89964 1.46019 1.02321 1.01829 1.85491 1.22834 0.87741 0.93683 0.98085 1.23209 0.97898 1.01079 0.94529 1.21027 0.91027 0.93434 0.92234 1.46107 1.37849 1.46721 1.07312 1.20658 0.84817 0.82943 0.82184 1.90687 1.49933 1.45698 1.55169 1.21771 0.98291 1.00296 0.97353 1.20958 0.99983 0.95418 0.92693 0.90015 1.20665 1.01628 0.97766 0.92901 1.22130 0.99591 0.98124 0.96433 1.21997 1.02583 0.94671 0.99368 1.20417 1.01966 0.94856 0.95367 1.21676 0.99253 0.99071 0.95327 1.22290 0.86820 0.93312 0.97151 0.92921 0.93663 0.93146 0.90292 0.90094 0.91656 0.76876 0.89023 0.88820 0.88897 0.91542 0.88271 0.88356 0.91290 0.90960 0.91750 0.91541 0.93476 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.07 13.70 55.49 0.76 -29.31 16 2 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 3 Si 1.07 27.17 25.13 -169.99 -4.27 22.90 16 4 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 5 H -0.29 -7.13 6.64 56.52 0.38 -6.76 16 6 H -0.29 -6.68 6.13 56.52 0.35 -6.34 16 7 C -0.30 -8.90 11.08 -15.06 -0.17 -9.06 16 8 H 0.08 2.54 8.05 -52.49 -0.42 2.11 16 9 N -0.63 -15.36 3.53 -184.59 -0.65 -16.01 16 10 C 0.10 2.08 5.22 -8.37 -0.04 2.04 16 11 C -0.15 -2.36 4.18 -89.97 -0.38 -2.74 16 12 C 0.15 2.40 5.51 -4.04 -0.02 2.38 16 13 N -0.73 -9.58 5.56 -60.30 -0.33 -9.92 16 14 C 0.51 7.00 7.59 -10.99 -0.08 6.92 16 15 O -0.54 -9.65 14.05 5.55 0.08 -9.57 16 16 C -0.14 -1.30 5.18 -27.88 -0.14 -1.44 16 17 C -0.07 -0.74 1.87 -90.40 -0.17 -0.91 16 18 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 19 C -0.09 -1.01 5.06 -28.13 -0.14 -1.15 16 20 C -0.14 -1.47 9.80 -35.85 -0.35 -1.83 16 21 C -0.17 -1.56 9.80 -35.90 -0.35 -1.91 16 22 C -0.09 -0.73 6.12 -28.18 -0.17 -0.90 16 23 C -0.12 -0.94 5.31 -26.52 -0.14 -1.08 16 24 C 0.13 2.50 8.25 -8.51 -0.07 2.43 16 25 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 26 H 0.05 0.89 7.73 -51.93 -0.40 0.49 16 27 H 0.05 1.08 4.63 -51.93 -0.24 0.84 16 28 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.69 7.92 -51.93 -0.41 1.28 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 32 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.25 6.25 -51.93 -0.32 0.93 16 35 H 0.07 0.64 8.07 -51.93 -0.42 0.23 16 36 H 0.10 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.10 0.80 8.06 -52.48 -0.42 0.37 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 337.59 15.07 5.09 5.09 Total: -1.00 -34.59 337.59 -8.94 -43.53 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.28 Total: 1.43 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.33 Total: -8.13 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.23 Total: -55.24 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.08 Total: -9.57 kcal Atomic # 14 Polarization: 27.17 SS G_CDS: -4.27 Total: 22.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.59 -8.94 -43.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665317812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.780 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds