Wall clock time and date at job start Tue Mar 31 2020 00:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47286 * 355.35894 * 3 2 1 5 5 H 1.48502 * 109.46836 * 115.35771 * 3 2 1 6 6 H 1.48499 * 109.47355 * 235.35563 * 3 2 1 7 7 C 1.38811 * 120.00080 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99719 * 352.27359 * 7 2 1 9 9 N 1.36934 * 119.99840 * 172.28268 * 7 2 1 10 10 C 1.47063 * 136.05810 * 6.40941 * 9 7 2 11 11 C 1.53762 * 87.88643 * 152.96713 * 10 9 7 12 12 C 1.52996 * 114.39231 * 272.67330 * 11 10 9 13 13 N 1.46498 * 109.47287 * 268.58636 * 12 11 10 14 14 C 1.34776 * 120.00140 * 180.02562 * 13 12 11 15 15 O 1.21289 * 119.99914 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47283 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.63916 * 305.00563 * 17 16 14 19 19 C 1.53024 * 109.63722 * 65.41817 * 17 16 14 20 20 C 1.50171 * 110.09077 * 168.90410 * 19 17 16 21 21 C 1.29441 * 124.14559 * 343.28760 * 20 19 17 22 22 C 1.50069 * 124.08185 * 0.23786 * 21 20 19 23 23 C 1.53025 * 110.14363 * 342.87270 * 22 21 20 24 24 C 1.47064 * 136.05375 * 186.78455 * 9 7 2 25 25 H 0.97001 * 119.99866 * 184.86089 * 1 2 3 26 26 H 1.09006 * 113.46603 * 267.69230 * 10 9 7 27 27 H 1.08994 * 113.46732 * 38.13815 * 10 9 7 28 28 H 1.09003 * 114.08461 * 139.77736 * 11 10 9 29 29 H 1.09001 * 109.46911 * 28.59078 * 12 11 10 30 30 H 1.08999 * 109.46964 * 148.58663 * 12 11 10 31 31 H 0.96999 * 119.99803 * 0.02562 * 13 12 11 32 32 H 1.08992 * 109.47463 * 300.00024 * 16 14 13 33 33 H 1.08999 * 109.46956 * 60.00028 * 16 14 13 34 34 H 1.08994 * 109.36271 * 289.32566 * 19 17 16 35 35 H 1.08996 * 109.35860 * 48.92139 * 19 17 16 36 36 H 1.07998 * 117.89126 * 163.03744 * 20 19 17 37 37 H 1.08005 * 117.96313 * 180.21491 * 21 20 19 38 38 H 1.08990 * 109.36161 * 222.66569 * 22 21 20 39 39 H 1.09005 * 109.24651 * 103.00189 * 22 21 20 40 40 H 1.09001 * 109.64284 * 289.74747 * 23 22 21 41 41 H 1.08997 * 109.64427 * 169.11712 * 23 22 21 42 42 H 1.09005 * 113.47262 * 321.85982 * 24 9 7 43 43 H 1.09007 * 113.47048 * 92.24273 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2891 2.7442 -0.1133 5 1 3.0169 1.7466 1.2652 6 1 3.1870 1.6486 -1.1518 7 6 2.0103 -1.2021 -0.0005 8 1 1.4776 -2.1332 0.1248 9 7 3.3703 -1.2074 -0.1598 10 6 4.4313 -0.1920 -0.2377 11 6 5.4058 -1.2508 0.3041 12 6 5.4698 -1.3283 1.8308 13 7 6.5279 -0.4415 2.3209 14 6 6.7687 -0.3466 3.6436 15 8 6.1090 -0.9949 4.4281 16 6 7.8575 0.5652 4.1477 17 6 7.9214 0.4877 5.6744 18 1 6.9405 0.7113 6.0940 19 6 8.3550 -0.9166 6.1004 20 6 8.6825 -0.9331 7.5659 21 6 8.9059 0.1283 8.2724 22 6 8.8641 1.5257 7.7271 23 6 8.9492 1.4980 6.1994 24 6 4.4120 -2.2307 -0.3348 25 1 -0.4850 -0.8370 0.0712 26 1 4.6560 0.1237 -1.2565 27 1 4.2792 0.6476 0.4405 28 1 6.3870 -1.2364 -0.1704 29 1 4.5127 -1.0187 2.2507 30 1 5.6851 -2.3529 2.1338 31 1 7.0552 0.0772 1.6934 32 1 8.8143 0.2554 3.7275 33 1 7.6424 1.5899 3.8449 34 1 7.5478 -1.6207 5.8990 35 1 9.2378 -1.2100 5.5325 36 1 8.7306 -1.8911 8.0621 37 1 9.1365 0.0002 9.3198 38 1 9.7042 2.0944 8.1254 39 1 7.9306 2.0012 8.0283 40 1 9.9505 1.1945 5.8937 41 1 8.7259 2.4881 5.8020 42 1 4.2435 -3.1280 0.2607 43 1 4.6309 -2.4531 -1.3793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665317812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:55 Heat of formation + Delta-G solvation = -3.178481 kcal Electronic energy + Delta-G solvation = -21582.224641 eV Core-core repulsion = 18434.875654 eV Total energy + Delta-G solvation = -3147.348987 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.15677 -40.26658 -38.97611 -35.70827 -34.52206 -33.71461 -31.58086 -30.86049 -28.80527 -26.98040 -26.84034 -24.13743 -23.66982 -22.34422 -21.37360 -20.55194 -19.45115 -18.85154 -17.85431 -17.42481 -17.04757 -16.73377 -16.46239 -16.00535 -15.81030 -15.16260 -15.07472 -14.91607 -14.56097 -14.03910 -13.79554 -13.53150 -13.38785 -13.29203 -13.14073 -12.97996 -12.86714 -12.45776 -12.31462 -12.18357 -11.91073 -11.61737 -11.47784 -11.35492 -10.99995 -10.98868 -10.89183 -10.64934 -10.03483 -9.81219 -9.17684 -8.67396 -5.46886 1.34181 1.43847 1.46880 1.65760 1.73547 2.25062 2.53073 3.00404 3.23050 3.46037 3.72593 3.80386 3.86935 3.90505 4.14659 4.29593 4.42779 4.43088 4.47576 4.51010 4.61196 4.66095 4.70743 4.74084 4.78434 4.81227 4.84199 4.86072 4.94313 5.02255 5.07223 5.12535 5.21765 5.25756 5.36394 5.41490 5.53107 5.57250 5.81248 5.94610 6.11059 6.66901 6.69843 7.32987 7.38204 8.28015 8.88784 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025638 B = 0.003568 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.870813 B = 7844.956989 C = 8193.628746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.092 4.092 3 Si 1.114 2.886 4 H -0.307 1.307 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.289 4.289 8 H 0.044 0.956 9 N -0.666 5.666 10 C 0.093 3.907 11 C -0.109 4.109 12 C 0.153 3.847 13 N -0.716 5.716 14 C 0.500 3.500 15 O -0.588 6.588 16 C -0.126 4.126 17 C -0.073 4.073 18 H 0.049 0.951 19 C -0.090 4.090 20 C -0.168 4.168 21 C -0.164 4.164 22 C -0.094 4.094 23 C -0.109 4.109 24 C 0.124 3.876 25 H 0.244 0.756 26 H 0.068 0.932 27 H 0.042 0.958 28 H 0.138 0.862 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.419 0.581 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.825 4.052 9.130 29.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.283 4.283 3 Si 0.940 3.060 4 H -0.235 1.235 5 H -0.209 1.209 6 H -0.172 1.172 7 C -0.417 4.417 8 H 0.062 0.938 9 N -0.396 5.396 10 C -0.031 4.031 11 C -0.128 4.128 12 C 0.028 3.972 13 N -0.369 5.369 14 C 0.289 3.711 15 O -0.469 6.469 16 C -0.166 4.166 17 C -0.092 4.092 18 H 0.067 0.933 19 C -0.127 4.127 20 C -0.186 4.186 21 C -0.182 4.182 22 C -0.131 4.131 23 C -0.146 4.146 24 C -0.002 4.002 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.156 0.844 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.256 0.744 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.935 5.180 9.631 29.070 hybrid contribution -1.048 -2.254 -0.042 2.486 sum 25.887 2.926 9.589 27.761 Atomic orbital electron populations 1.71028 1.06812 1.28472 1.55745 1.27170 0.96513 1.04866 0.99750 0.83198 0.73294 0.71508 0.77959 1.23550 1.20948 1.17186 1.19991 0.81713 0.94242 1.45781 0.93776 1.46152 1.01524 1.05832 1.86059 1.23126 0.87079 0.93694 0.99233 1.22966 0.99251 0.96930 0.93672 1.20704 0.89819 0.93978 0.92696 1.45937 1.36944 1.46283 1.07746 1.21554 0.85088 0.82668 0.81813 1.90685 1.51931 1.47797 1.56446 1.21818 0.97920 1.00354 0.96468 1.20934 0.99126 0.95655 0.93458 0.93251 1.20581 1.00869 0.97591 0.93676 1.22199 1.01207 0.98712 0.96457 1.22255 1.01007 0.95084 0.99830 1.20517 1.02611 0.94182 0.95815 1.21657 0.98983 0.99035 0.94962 1.22605 0.85829 0.92962 0.98779 0.94709 0.91416 0.94042 0.84406 0.95349 0.91710 0.74377 0.85552 0.86376 0.92358 0.90197 0.88331 0.87329 0.89288 0.91337 0.90341 0.89901 0.94009 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.45 13.70 21.65 0.30 -65.15 16 2 C -0.09 -5.71 5.50 84.86 0.47 -5.25 16 3 Si 1.11 54.65 25.13 68.60 1.72 56.37 16 4 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 5 H -0.28 -13.08 6.64 99.48 0.66 -12.42 16 6 H -0.25 -10.39 6.13 99.48 0.61 -9.78 16 7 C -0.29 -17.44 11.08 84.03 0.93 -16.51 16 8 H 0.04 2.90 8.05 -2.91 -0.02 2.87 16 9 N -0.67 -32.03 3.53 -737.92 -2.60 -34.63 16 10 C 0.09 3.45 5.22 83.27 0.43 3.89 16 11 C -0.11 -3.05 4.18 -10.37 -0.04 -3.10 16 12 C 0.15 4.76 5.51 86.38 0.48 5.24 16 13 N -0.72 -16.64 5.56 -463.07 -2.57 -19.21 16 14 C 0.50 12.96 7.59 87.66 0.66 13.62 16 15 O -0.59 -21.55 14.05 -3.06 -0.04 -21.59 16 16 C -0.13 -1.95 5.18 29.85 0.15 -1.80 16 17 C -0.07 -1.37 1.87 -10.65 -0.02 -1.39 16 18 H 0.05 1.25 7.94 -2.38 -0.02 1.23 16 19 C -0.09 -1.91 5.06 29.69 0.15 -1.76 16 20 C -0.17 -3.34 9.80 27.07 0.27 -3.08 16 21 C -0.16 -2.80 9.80 27.04 0.27 -2.54 16 22 C -0.09 -1.32 6.12 29.66 0.18 -1.14 16 23 C -0.11 -1.40 5.31 30.73 0.16 -1.24 16 24 C 0.12 4.42 8.25 83.18 0.69 5.11 16 25 H 0.24 16.50 8.73 -92.71 -0.81 15.69 16 26 H 0.07 2.29 7.73 -2.38 -0.02 2.27 16 27 H 0.04 1.64 4.63 -2.39 -0.01 1.63 16 28 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.03 1.19 7.92 -2.39 -0.02 1.17 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.42 6.12 8.47 -92.71 -0.79 5.33 16 32 H 0.13 1.15 8.10 -2.39 -0.02 1.13 16 33 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.06 1.64 6.25 -2.39 -0.01 1.63 16 35 H 0.08 1.41 8.07 -2.39 -0.02 1.39 16 36 H 0.10 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.04 1.52 8.12 -2.38 -0.02 1.50 16 43 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 Total: -1.00 -82.15 337.59 1.59 -80.55 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.02 Total: 13.60 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 4.78 Total: -9.94 kcal Atomic # 7 Polarization: -114.12 SS G_CDS: -4.88 Total: -118.99 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.04 Total: -21.59 kcal Atomic # 14 Polarization: 54.65 SS G_CDS: 1.72 Total: 56.37 kcal Total: -82.15 1.59 -80.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665317812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.376 kcal (2) G-P(sol) polarization free energy of solvation -82.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds