Wall clock time and date at job start Tue Mar 31 2020 00:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46669 * 299.99714 * 3 2 1 6 6 H 1.48501 * 109.47436 * 59.99165 * 3 2 1 7 7 C 1.38813 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00424 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46783 * 180.02562 * 10 9 7 12 12 C 1.30997 * 119.99951 * 125.00392 * 11 10 9 13 13 C 1.50702 * 120.00225 * 179.72410 * 12 11 10 14 14 N 1.46499 * 109.47423 * 125.27449 * 13 12 11 15 15 C 1.34773 * 119.99861 * 180.02562 * 14 13 12 16 16 O 1.21612 * 120.00579 * 359.97438 * 15 14 13 17 17 C 1.47107 * 119.99734 * 180.02562 * 15 14 13 18 18 C 1.32999 * 119.99965 * 186.98639 * 17 15 14 19 19 C 1.51261 * 120.84890 * 12.16197 * 18 17 15 20 20 C 1.53659 * 108.31021 * 128.62367 * 19 18 17 21 21 C 1.52956 * 109.32659 * 54.85950 * 20 19 18 22 22 C 1.52959 * 109.81820 * 296.27395 * 21 20 19 23 23 C 1.51268 * 120.84736 * 192.45050 * 18 17 15 24 24 H 0.96997 * 119.99921 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99800 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47309 * 60.00796 * 10 9 7 27 27 H 1.08993 * 109.47538 * 300.00058 * 10 9 7 28 28 H 1.08000 * 120.00150 * 304.99783 * 11 10 9 29 29 H 1.08000 * 119.99898 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47111 * 245.27252 * 13 12 11 31 31 H 1.09000 * 109.46931 * 5.27194 * 13 12 11 32 32 H 0.97000 * 119.99829 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.00034 * 6.97312 * 17 15 14 34 34 H 1.09002 * 109.62770 * 248.39107 * 19 18 17 35 35 H 1.09000 * 109.62914 * 8.96323 * 19 18 17 36 36 H 1.09008 * 109.62790 * 294.84348 * 20 19 18 37 37 H 1.08999 * 109.43386 * 174.75682 * 20 19 18 38 38 H 1.08999 * 109.41991 * 176.16893 * 21 20 19 39 39 H 1.09003 * 109.41102 * 56.37824 * 21 20 19 40 40 H 1.08996 * 109.48319 * 303.62017 * 22 21 20 41 41 H 1.09000 * 109.48429 * 183.56914 * 22 21 20 42 42 H 1.08999 * 109.62796 * 351.03231 * 23 18 17 43 43 H 1.08996 * 109.62714 * 111.60895 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 1.1480 -5.7227 -0.9295 13 6 0.1726 -6.8715 -0.9266 14 7 -0.5026 -6.9421 -2.2248 15 6 -1.4246 -7.8981 -2.4536 16 8 -1.6958 -8.7024 -1.5827 17 6 -2.1023 -7.9694 -3.7574 18 6 -3.1080 -8.8206 -3.9384 19 6 -3.7507 -9.5231 -2.7631 20 6 -5.2709 -9.3167 -2.8497 21 6 -5.7691 -9.7908 -4.2159 22 6 -5.1550 -8.9283 -5.3198 23 6 -3.6342 -9.1157 -5.3256 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3880 -0.0002 26 1 2.6846 -3.7146 0.8905 27 1 2.6847 -3.7146 -0.8894 28 1 0.3198 -4.8642 0.7658 29 1 1.9068 -5.6605 -1.6956 30 1 0.7088 -7.8029 -0.7449 31 1 -0.5666 -6.7184 -0.1404 32 1 -0.2866 -6.3004 -2.9194 33 1 -1.7832 -7.3303 -4.5674 34 1 -3.5202 -10.5878 -2.8022 35 1 -3.3748 -9.0983 -1.8323 36 1 -5.5046 -8.2593 -2.7244 37 1 -5.7604 -9.8927 -2.0644 38 1 -6.8553 -9.7086 -4.2540 39 1 -5.4801 -10.8311 -4.3659 40 1 -5.3914 -7.8802 -5.1360 41 1 -5.5620 -9.2292 -6.2851 42 1 -3.1834 -8.4290 -6.0420 43 1 -3.3931 -10.1433 -5.5976 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668731113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:11 Heat of formation + Delta-G solvation = -9.836263 kcal Electronic energy + Delta-G solvation = -20373.122862 eV Core-core repulsion = 17225.485171 eV Total energy + Delta-G solvation = -3147.637690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06110 -38.21193 -36.25753 -34.70303 -33.01049 -32.70733 -31.21011 -30.60733 -27.96053 -26.36705 -24.13135 -23.19476 -22.17969 -21.54369 -20.61238 -19.61909 -18.67415 -17.14625 -16.87961 -16.19658 -15.43556 -15.08802 -14.87019 -14.60602 -14.44728 -13.95008 -13.86715 -13.56666 -13.44312 -13.23501 -12.90901 -12.71756 -12.55207 -12.13427 -12.00647 -11.80881 -11.36029 -11.17015 -11.04493 -10.95409 -10.84779 -10.59846 -10.56208 -10.05514 -9.82834 -9.62589 -9.20935 -9.07944 -8.92591 -8.68527 -6.96031 -5.79325 -3.08935 1.21951 2.30206 3.24184 3.41722 3.44679 3.47484 3.49768 4.42387 4.44702 4.58227 4.62870 4.73857 4.87544 4.96811 5.06734 5.13288 5.16538 5.27400 5.31279 5.36634 5.53927 5.56777 5.63053 5.66600 5.72820 5.77189 5.82008 5.83225 5.99721 6.01976 6.09409 6.12939 6.32446 6.40195 6.47302 6.55607 6.60962 6.90942 7.14928 7.56254 7.67501 8.25787 8.39009 9.50332 10.06731 10.41985 11.43463 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.002459 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.292902 B =11382.853578 C =12015.656832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.172 3.828 11 C -0.107 4.107 12 C -0.201 4.201 13 C 0.155 3.845 14 N -0.720 5.720 15 C 0.546 3.454 16 O -0.545 6.545 17 C -0.232 4.232 18 C -0.021 4.021 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.118 4.118 23 C -0.093 4.093 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.031 0.969 27 H 0.025 0.975 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.404 0.596 33 H 0.127 0.873 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 -21.081 -10.573 24.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.045 3.955 11 C -0.127 4.127 12 C -0.221 4.221 13 C 0.032 3.968 14 N -0.370 5.370 15 C 0.336 3.664 16 O -0.426 6.426 17 C -0.253 4.253 18 C -0.023 4.023 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.155 4.155 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.219 0.781 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.238 0.762 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.302 -21.509 -9.933 25.105 hybrid contribution 0.314 1.383 -0.452 1.488 sum -7.988 -20.126 -10.385 24.015 Atomic orbital electron populations 1.69680 1.05139 1.25627 1.57628 1.24775 0.95571 0.97784 1.02902 0.86088 0.78766 0.83938 0.77222 1.20507 1.21810 1.21796 1.19294 0.91108 0.84008 1.42841 0.91008 1.42314 1.05965 0.99588 1.89571 1.19825 0.92617 0.84582 0.98426 1.23330 0.98272 0.94034 0.97038 1.22700 1.01005 0.97031 1.01326 1.20307 0.93901 0.97485 0.85064 1.45998 1.41376 1.32692 1.16912 1.18581 0.79518 0.80549 0.87726 1.90603 1.63580 1.41302 1.47125 1.22326 1.01404 1.04146 0.97416 1.22705 0.91468 0.91807 0.96324 1.21683 0.94051 1.00847 0.99184 1.21685 0.95432 1.01554 0.96890 1.21567 0.99957 0.99626 0.94943 1.21581 0.94259 1.00730 0.98969 1.20975 0.96266 1.02522 0.93293 0.93495 0.78135 0.95129 0.95685 0.87282 0.86788 0.91142 0.91250 0.76188 0.85520 0.90736 0.86052 0.91922 0.91580 0.91981 0.91926 0.91594 0.91578 0.90743 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 9 N -0.73 -18.72 5.59 -61.09 -0.34 -19.07 16 10 C 0.17 3.47 6.70 -5.19 -0.03 3.44 16 11 C -0.11 -1.76 9.24 -36.02 -0.33 -2.09 16 12 C -0.20 -2.78 9.24 -36.02 -0.33 -3.11 16 13 C 0.16 2.02 6.11 -5.19 -0.03 1.98 16 14 N -0.72 -8.74 5.54 -62.67 -0.35 -9.09 16 15 C 0.55 7.15 7.62 -12.66 -0.10 7.05 16 16 O -0.54 -8.58 13.22 5.27 0.07 -8.51 16 17 C -0.23 -2.43 9.66 -37.80 -0.36 -2.79 16 18 C -0.02 -0.21 5.38 -100.61 -0.54 -0.75 16 19 C -0.12 -1.27 5.32 -27.27 -0.15 -1.42 16 20 C -0.12 -1.02 5.95 -26.41 -0.16 -1.18 16 21 C -0.12 -0.87 5.81 -26.77 -0.16 -1.02 16 22 C -0.12 -0.79 5.94 -26.63 -0.16 -0.95 16 23 C -0.09 -0.67 6.04 -27.48 -0.17 -0.84 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.39 10.39 7.66 -40.82 -0.31 10.08 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 28 H 0.11 1.76 7.84 -52.49 -0.41 1.35 16 29 H 0.11 1.49 7.84 -52.49 -0.41 1.08 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.97 7.79 -51.93 -0.40 0.56 16 32 H 0.40 4.20 8.45 -40.82 -0.34 3.85 16 33 H 0.13 1.05 7.96 -52.49 -0.42 0.63 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.12 1.61 4.79 -52.86 -0.25 1.36 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 352.37 15.07 5.31 5.31 Total: -1.00 -31.99 352.37 -9.52 -41.51 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -7.15 Total: 9.25 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.76 Total: -9.15 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.04 Total: -55.78 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.07 Total: -8.51 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.99 -9.52 -41.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668731113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.675 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds