Wall clock time and date at job start Tue Mar 31 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00203 * 2 1 4 4 H 1.48499 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46669 * 299.99714 * 3 2 1 6 6 H 1.48501 * 109.47436 * 59.99165 * 3 2 1 7 7 C 1.38813 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00424 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99837 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.46783 * 180.02562 * 10 9 7 12 12 C 1.30997 * 119.99951 * 125.00392 * 11 10 9 13 13 C 1.50702 * 120.00225 * 179.72410 * 12 11 10 14 14 N 1.46499 * 109.47423 * 125.27449 * 13 12 11 15 15 C 1.34773 * 119.99861 * 180.02562 * 14 13 12 16 16 O 1.21612 * 120.00579 * 359.97438 * 15 14 13 17 17 C 1.47107 * 119.99734 * 180.02562 * 15 14 13 18 18 C 1.32999 * 119.99965 * 186.98639 * 17 15 14 19 19 C 1.51261 * 120.84890 * 12.16197 * 18 17 15 20 20 C 1.53659 * 108.31021 * 128.62367 * 19 18 17 21 21 C 1.52956 * 109.32659 * 54.85950 * 20 19 18 22 22 C 1.52959 * 109.81820 * 296.27395 * 21 20 19 23 23 C 1.51268 * 120.84736 * 192.45050 * 18 17 15 24 24 H 0.96997 * 119.99921 * 0.02562 * 1 2 3 25 25 H 0.97005 * 119.99800 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.47309 * 60.00796 * 10 9 7 27 27 H 1.08993 * 109.47538 * 300.00058 * 10 9 7 28 28 H 1.08000 * 120.00150 * 304.99783 * 11 10 9 29 29 H 1.08000 * 119.99898 * 359.97438 * 12 11 10 30 30 H 1.09002 * 109.47111 * 245.27252 * 13 12 11 31 31 H 1.09000 * 109.46931 * 5.27194 * 13 12 11 32 32 H 0.97000 * 119.99829 * 359.97438 * 14 13 12 33 33 H 1.08001 * 120.00034 * 6.97312 * 17 15 14 34 34 H 1.09002 * 109.62770 * 248.39107 * 19 18 17 35 35 H 1.09000 * 109.62914 * 8.96323 * 19 18 17 36 36 H 1.09008 * 109.62790 * 294.84348 * 20 19 18 37 37 H 1.08999 * 109.43386 * 174.75682 * 20 19 18 38 38 H 1.08999 * 109.41991 * 176.16893 * 21 20 19 39 39 H 1.09003 * 109.41102 * 56.37824 * 21 20 19 40 40 H 1.08996 * 109.48319 * 303.62017 * 22 21 20 41 41 H 1.09000 * 109.48429 * 183.56914 * 22 21 20 42 42 H 1.08999 * 109.62796 * 351.03231 * 23 18 17 43 43 H 1.08996 * 109.62714 * 111.60895 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0787 -4.8022 -0.0001 12 6 1.1480 -5.7227 -0.9295 13 6 0.1726 -6.8715 -0.9266 14 7 -0.5026 -6.9421 -2.2248 15 6 -1.4246 -7.8981 -2.4536 16 8 -1.6958 -8.7024 -1.5827 17 6 -2.1023 -7.9694 -3.7574 18 6 -3.1080 -8.8206 -3.9384 19 6 -3.7507 -9.5231 -2.7631 20 6 -5.2709 -9.3167 -2.8497 21 6 -5.7691 -9.7908 -4.2159 22 6 -5.1550 -8.9283 -5.3198 23 6 -3.6342 -9.1157 -5.3256 24 1 -0.4850 0.8400 -0.0004 25 1 0.3555 -2.3880 -0.0002 26 1 2.6846 -3.7146 0.8905 27 1 2.6847 -3.7146 -0.8894 28 1 0.3198 -4.8642 0.7658 29 1 1.9068 -5.6605 -1.6956 30 1 0.7088 -7.8029 -0.7449 31 1 -0.5666 -6.7184 -0.1404 32 1 -0.2866 -6.3004 -2.9194 33 1 -1.7832 -7.3303 -4.5674 34 1 -3.5202 -10.5878 -2.8022 35 1 -3.3748 -9.0983 -1.8323 36 1 -5.5046 -8.2593 -2.7244 37 1 -5.7604 -9.8927 -2.0644 38 1 -6.8553 -9.7086 -4.2540 39 1 -5.4801 -10.8311 -4.3659 40 1 -5.3914 -7.8802 -5.1360 41 1 -5.5620 -9.2292 -6.2851 42 1 -3.1834 -8.4290 -6.0420 43 1 -3.3931 -10.1433 -5.5976 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668731113.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:10 Heat of formation + Delta-G solvation = -29.642664 kcal Electronic energy + Delta-G solvation = -20373.981732 eV Core-core repulsion = 17225.485171 eV Total energy + Delta-G solvation = -3148.496560 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.02203 -38.96995 -37.64711 -36.22200 -34.42220 -33.64246 -32.40064 -31.86362 -29.18778 -27.51740 -25.76535 -23.91620 -23.69153 -22.48729 -21.51271 -20.79623 -19.57785 -19.10610 -17.85621 -17.16881 -16.69512 -16.45152 -15.88843 -15.78812 -15.32832 -15.15507 -15.09649 -15.03947 -14.49055 -14.41950 -14.04918 -13.59586 -13.51556 -13.35042 -13.17672 -12.89956 -12.78741 -12.73209 -12.15629 -12.00710 -11.99673 -11.85116 -11.75852 -11.63218 -11.18861 -11.06722 -10.64971 -10.16442 -10.05722 -9.77242 -9.02731 -7.97173 -5.27339 0.38547 1.06064 1.47818 1.48788 1.59132 2.28930 2.45866 2.56307 3.36756 3.70807 3.74355 3.79395 4.03925 4.06640 4.08627 4.20224 4.22337 4.33423 4.46296 4.47190 4.50922 4.63987 4.66665 4.70921 4.80055 4.91479 4.99328 4.99567 5.02529 5.13961 5.17807 5.18648 5.29411 5.43512 5.46766 5.48010 5.61079 5.64830 5.73921 5.83223 6.25058 6.60467 7.27621 7.30896 8.04776 8.28789 9.26581 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.002459 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.292902 B =11382.853578 C =12015.656832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.293 1.293 7 C -0.248 4.248 8 H 0.079 0.921 9 N -0.745 5.745 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.161 4.161 13 C 0.158 3.842 14 N -0.715 5.715 15 C 0.539 3.461 16 O -0.578 6.578 17 C -0.246 4.246 18 C -0.017 4.017 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.091 4.091 24 H 0.252 0.748 25 H 0.374 0.626 26 H 0.031 0.969 27 H 0.034 0.966 28 H 0.106 0.894 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.413 0.587 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 -21.792 -12.453 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.806 3.194 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.220 1.220 7 C -0.379 4.379 8 H 0.097 0.903 9 N -0.388 5.388 10 C 0.048 3.952 11 C -0.152 4.152 12 C -0.180 4.180 13 C 0.035 3.965 14 N -0.366 5.366 15 C 0.331 3.669 16 O -0.462 6.462 17 C -0.266 4.266 18 C -0.019 4.019 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.155 4.155 23 C -0.128 4.128 24 H 0.061 0.939 25 H 0.206 0.794 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.124 0.876 29 H 0.148 0.852 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.250 0.750 33 H 0.169 0.831 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.871 -22.240 -11.828 26.391 hybrid contribution 0.189 1.453 0.140 1.472 sum -7.682 -20.787 -11.688 25.055 Atomic orbital electron populations 1.69837 1.06716 1.26141 1.59375 1.25642 0.96472 1.01321 1.03517 0.85019 0.78244 0.79433 0.76717 1.18860 1.21840 1.22027 1.19718 0.91649 0.85179 1.41402 0.90322 1.42555 1.05710 1.00980 1.89535 1.19909 0.93134 0.83645 0.98517 1.23005 0.98860 0.94347 0.99021 1.22782 1.00040 0.95472 0.99693 1.20206 0.93570 0.97330 0.85424 1.45929 1.41142 1.32839 1.16700 1.19088 0.79393 0.80057 0.88403 1.90607 1.64577 1.42586 1.48401 1.22418 1.02010 1.05510 0.96701 1.23001 0.90782 0.90648 0.97447 1.21599 0.95373 1.00715 0.98384 1.21668 0.94180 1.01090 0.98463 1.21565 1.00573 1.00000 0.93748 1.21597 0.93865 1.00282 0.99709 1.21051 0.96558 1.03579 0.91584 0.93922 0.79437 0.95136 0.94853 0.87551 0.85179 0.90349 0.92437 0.75038 0.83075 0.90666 0.89038 0.92901 0.91327 0.90987 0.91248 0.92272 0.89668 0.89333 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.82 13.06 21.65 0.28 -59.54 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.75 -38.44 5.59 -347.19 -1.94 -40.39 16 10 C 0.17 6.91 6.70 85.63 0.57 7.49 16 11 C -0.13 -4.30 9.24 25.65 0.24 -4.06 16 12 C -0.16 -4.19 9.24 25.65 0.24 -3.96 16 13 C 0.16 3.97 6.11 85.63 0.52 4.49 16 14 N -0.72 -16.69 5.54 -470.45 -2.61 -19.29 16 15 C 0.54 13.94 7.62 86.57 0.66 14.60 16 16 O -0.58 -18.59 13.22 -4.07 -0.05 -18.65 16 17 C -0.25 -4.85 9.66 23.43 0.23 -4.63 16 18 C -0.02 -0.31 5.38 -17.26 -0.09 -0.40 16 19 C -0.12 -2.60 5.32 30.25 0.16 -2.44 16 20 C -0.12 -1.96 5.95 30.80 0.18 -1.78 16 21 C -0.12 -1.47 5.81 30.57 0.18 -1.30 16 22 C -0.12 -1.28 5.94 30.66 0.18 -1.10 16 23 C -0.09 -1.07 6.04 30.11 0.18 -0.89 16 24 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 25 H 0.37 20.60 7.66 -92.70 -0.71 19.89 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.03 1.28 7.79 -2.39 -0.02 1.26 16 28 H 0.11 3.49 7.84 -2.91 -0.02 3.47 16 29 H 0.13 3.04 7.84 -2.91 -0.02 3.02 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.61 7.79 -2.39 -0.02 1.59 16 32 H 0.41 7.92 8.45 -92.71 -0.78 7.14 16 33 H 0.15 2.15 7.96 -2.91 -0.02 2.13 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 35 H 0.09 2.54 4.79 -17.16 -0.08 2.46 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -68.99 352.37 1.69 -67.30 By element: Atomic # 1 Polarization: 34.14 SS G_CDS: -0.57 Total: 33.57 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: 4.56 Total: -11.08 kcal Atomic # 7 Polarization: -114.95 SS G_CDS: -4.27 Total: -119.22 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -68.99 1.69 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668731113.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.652 kcal (2) G-P(sol) polarization free energy of solvation -68.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds