Wall clock time and date at job start Tue Mar 31 2020 00:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 120.00022 * 2 1 4 4 H 1.48492 * 109.47048 * 269.99156 * 3 2 1 5 5 H 1.48498 * 109.47239 * 29.99456 * 3 2 1 6 6 H 1.48500 * 109.46938 * 149.99294 * 3 2 1 7 7 C 1.38810 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00320 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99888 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99889 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47226 * 179.97438 * 10 9 7 12 12 C 1.30998 * 120.00274 * 124.99997 * 11 10 9 13 13 C 1.50694 * 120.00274 * 180.02562 * 12 11 10 14 14 N 1.46505 * 109.47317 * 125.00159 * 13 12 11 15 15 C 1.34774 * 120.00091 * 180.02562 * 14 13 12 16 16 O 1.21616 * 120.00334 * 359.97438 * 15 14 13 17 17 C 1.47104 * 119.99849 * 179.97438 * 15 14 13 18 18 C 1.31564 * 119.85401 * 179.97438 * 17 15 14 19 19 C 1.51408 * 120.29197 * 180.02562 * 18 17 15 20 20 C 1.53035 * 108.72368 * 288.29698 * 19 18 17 21 21 C 1.52000 * 110.69386 * 85.50357 * 20 19 18 22 22 C 1.51779 * 114.00786 * 293.31645 * 21 20 19 23 23 C 1.51403 * 119.85370 * 359.97438 * 17 15 14 24 24 H 0.97001 * 119.99621 * 0.02562 * 1 2 3 25 25 H 0.96993 * 120.00313 * 359.97438 * 9 7 2 26 26 H 1.09002 * 109.46942 * 59.99864 * 10 9 7 27 27 H 1.08998 * 109.47093 * 299.99926 * 10 9 7 28 28 H 1.08008 * 119.99880 * 305.00181 * 11 10 9 29 29 H 1.07998 * 119.99839 * 0.02562 * 12 11 10 30 30 H 1.09003 * 109.47255 * 5.00353 * 13 12 11 31 31 H 1.08999 * 109.47798 * 244.99973 * 13 12 11 32 32 H 0.97003 * 119.99585 * 359.97438 * 14 13 12 33 33 H 1.07997 * 119.85244 * 0.02562 * 18 17 15 34 34 H 1.09002 * 109.62273 * 48.11558 * 19 18 17 35 35 H 1.08998 * 109.62018 * 168.48044 * 19 18 17 36 36 H 1.09000 * 109.20742 * 206.15086 * 20 19 18 37 37 H 1.09006 * 109.21011 * 325.46269 * 20 19 18 38 38 H 1.09002 * 108.55825 * 172.11279 * 21 20 19 39 39 H 1.09004 * 108.48856 * 54.46818 * 21 20 19 40 40 H 1.08992 * 109.21000 * 306.55501 * 22 21 20 41 41 H 1.09003 * 109.16868 * 187.21462 * 22 21 20 42 42 H 1.08997 * 109.62394 * 11.30859 * 23 17 15 43 43 H 1.09002 * 109.62765 * 131.67778 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.5937 -2.1956 0.0020 12 6 6.3566 -2.7149 0.9317 13 6 7.8381 -2.4391 0.9318 14 7 8.2315 -1.8845 2.2295 15 6 9.5187 -1.5586 2.4607 16 8 10.3537 -1.7253 1.5924 17 6 9.9136 -1.0012 3.7635 18 6 11.1709 -0.6845 3.9864 19 6 11.5885 -0.1106 5.3238 20 6 11.0571 1.3204 5.4319 21 6 9.6286 1.3252 5.9514 22 6 8.6224 0.7079 4.9974 23 6 8.8713 -0.7945 4.8420 24 1 -0.4849 0.8401 -0.0004 25 1 3.8646 -0.3622 0.0007 26 1 3.8491 -3.0431 -0.8875 27 1 3.8484 -3.0419 0.8925 28 1 6.0266 -1.5701 -0.7648 29 1 5.9238 -3.3406 1.6982 30 1 8.0745 -1.7236 0.1442 31 1 8.3806 -3.3676 0.7540 32 1 7.5655 -1.7512 2.9220 33 1 11.9085 -0.8345 3.2119 34 1 11.1726 -0.7172 6.1283 35 1 12.6761 -0.1036 5.3956 36 1 11.6932 1.8889 6.1103 37 1 11.0783 1.7862 4.4466 38 1 9.3344 2.3561 6.1481 39 1 9.6008 0.7735 6.8911 40 1 8.7103 1.1887 4.0232 41 1 7.6166 0.8665 5.3862 42 1 7.9445 -1.2913 4.5554 43 1 9.2320 -1.2079 5.7839 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668792350.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:09 Heat of formation + Delta-G solvation = -9.601373 kcal Electronic energy + Delta-G solvation = -20898.925169 eV Core-core repulsion = 17751.297664 eV Total energy + Delta-G solvation = -3147.627505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.25914 -38.23286 -36.42852 -34.90165 -33.18137 -32.72499 -32.14065 -30.89681 -27.70712 -26.00387 -24.85377 -23.77851 -21.79115 -21.36158 -20.68963 -19.89991 -18.42664 -17.61323 -17.47846 -16.33827 -15.45761 -15.20531 -15.10676 -14.62984 -14.46421 -14.05147 -13.93170 -13.85634 -13.47897 -13.26973 -13.12967 -12.76051 -12.35711 -12.19797 -12.12781 -11.97354 -11.47230 -11.36480 -11.06548 -11.01610 -10.90203 -10.81412 -10.69442 -10.19725 -10.01831 -9.64057 -9.43501 -9.28846 -9.03528 -8.79437 -7.27970 -5.80543 -3.16865 1.21324 2.14868 3.15919 3.29296 3.35297 3.38594 3.43234 4.27920 4.44518 4.49805 4.56101 4.62773 4.65971 4.81629 4.85653 5.01591 5.13087 5.14916 5.27905 5.34966 5.41409 5.46261 5.48609 5.52802 5.62355 5.70185 5.75041 5.79051 5.79842 5.83723 5.87221 6.03930 6.16538 6.28168 6.31670 6.35915 6.46769 6.77406 6.99915 7.42791 7.94951 8.11634 8.38278 9.16761 9.88915 10.08630 11.37670 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.003399 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.278655 B = 8236.196157 C = 9338.528223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.753 5.753 10 C 0.178 3.822 11 C -0.116 4.116 12 C -0.196 4.196 13 C 0.153 3.847 14 N -0.720 5.720 15 C 0.551 3.449 16 O -0.550 6.550 17 C -0.179 4.179 18 C -0.071 4.071 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.081 4.081 24 H 0.260 0.740 25 H 0.362 0.638 26 H 0.040 0.960 27 H 0.034 0.966 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.403 0.597 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.637 -0.780 12.890 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.051 3.949 11 C -0.135 4.135 12 C -0.215 4.215 13 C 0.030 3.970 14 N -0.372 5.372 15 C 0.340 3.660 16 O -0.430 6.430 17 C -0.182 4.182 18 C -0.091 4.091 19 C -0.134 4.134 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.119 4.119 24 H 0.070 0.930 25 H 0.195 0.805 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.127 0.873 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.240 0.760 33 H 0.143 0.857 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.946 -0.990 12.254 26.917 hybrid contribution 0.127 1.232 0.186 1.252 sum 24.073 0.242 12.440 27.098 Atomic orbital electron populations 1.69702 1.05104 1.25916 1.57360 1.24675 0.95251 0.97262 1.01876 0.86535 0.79196 0.84866 0.77877 1.20983 1.21630 1.20322 1.19068 0.80450 0.94848 1.43333 0.89116 1.42648 1.03959 1.01998 1.91267 1.19788 0.86099 0.89749 0.99264 1.23360 0.96667 0.96313 0.97174 1.22745 0.93839 1.03751 1.01202 1.20336 0.92830 0.98753 0.85039 1.46047 1.09275 1.64834 1.17051 1.18441 0.82230 0.77689 0.87689 1.90776 1.50805 1.54856 1.46516 1.21220 0.96478 1.05379 0.95104 1.23326 0.95858 0.92005 0.97885 1.20961 1.01204 0.96464 0.94727 1.21305 0.96244 0.95664 1.01997 1.21173 0.94431 1.01166 0.98921 1.21315 0.99243 0.94515 1.00451 1.20787 0.96963 0.97021 0.97106 0.92977 0.80522 0.94262 0.94859 0.87297 0.86514 0.91224 0.90906 0.76037 0.85713 0.90291 0.90772 0.91381 0.91666 0.92051 0.92124 0.91615 0.91096 0.91229 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.89 22.10 27.74 -169.99 -4.71 17.38 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.25 -7.03 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.75 -17.96 5.40 -61.08 -0.33 -18.29 16 10 C 0.18 3.38 6.70 -5.19 -0.03 3.34 16 11 C -0.12 -1.75 9.24 -36.03 -0.33 -2.09 16 12 C -0.20 -2.52 9.24 -36.03 -0.33 -2.85 16 13 C 0.15 1.90 6.11 -5.19 -0.03 1.87 16 14 N -0.72 -8.45 5.51 -62.67 -0.35 -8.80 16 15 C 0.55 7.18 7.75 -12.66 -0.10 7.08 16 16 O -0.55 -9.06 16.18 5.26 0.09 -8.98 16 17 C -0.18 -1.80 5.10 -102.53 -0.52 -2.32 16 18 C -0.07 -0.65 8.93 -35.81 -0.32 -0.97 16 19 C -0.10 -0.62 5.61 -27.52 -0.15 -0.77 16 20 C -0.11 -0.73 5.69 -27.22 -0.15 -0.89 16 21 C -0.12 -0.78 5.27 -27.86 -0.15 -0.93 16 22 C -0.12 -0.92 5.67 -27.31 -0.15 -1.08 16 23 C -0.08 -0.64 5.36 -27.50 -0.15 -0.79 16 24 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.36 8.44 5.52 -40.82 -0.23 8.22 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.03 0.63 7.79 -51.93 -0.40 0.23 16 28 H 0.11 1.59 7.84 -52.48 -0.41 1.18 16 29 H 0.12 1.41 7.84 -52.49 -0.41 1.00 16 30 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.40 4.03 6.24 -40.82 -0.25 3.78 16 33 H 0.13 1.27 7.44 -52.49 -0.39 0.88 16 34 H 0.08 0.46 6.75 -51.93 -0.35 0.11 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.35 7.88 -51.93 -0.41 -0.06 16 40 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.52 5.99 -51.93 -0.31 0.21 16 43 H 0.08 0.53 6.76 -51.93 -0.35 0.18 16 LS Contribution 344.94 15.07 5.20 5.20 Total: -1.00 -33.29 344.94 -8.88 -42.18 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.87 Total: 7.35 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: -2.69 Total: -7.52 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: 0.10 Total: -55.61 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.38 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.29 -8.88 -42.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668792350.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.575 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds