Wall clock time and date at job start Tue Mar 31 2020 00:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47206 * 300.00493 * 3 2 1 6 6 H 1.48504 * 109.46638 * 60.00667 * 3 2 1 7 7 C 1.38814 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99766 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47409 * 179.97438 * 10 9 7 12 12 C 1.30997 * 120.00425 * 127.00135 * 11 10 9 13 13 C 1.50700 * 119.99695 * 7.56382 * 12 11 10 14 14 N 1.46495 * 109.47250 * 127.15737 * 13 12 11 15 15 C 1.34777 * 120.00512 * 179.97438 * 14 13 12 16 16 O 1.21616 * 119.99581 * 0.02562 * 15 14 13 17 17 C 1.47096 * 120.00524 * 179.97438 * 15 14 13 18 18 C 1.31557 * 119.85484 * 179.97438 * 17 15 14 19 19 C 1.51415 * 120.29278 * 179.97438 * 18 17 15 20 20 C 1.53031 * 108.72638 * 288.32494 * 19 18 17 21 21 C 1.52028 * 110.67538 * 85.52844 * 20 19 18 22 22 C 1.51783 * 113.99143 * 293.27873 * 21 20 19 23 23 C 1.51418 * 119.85229 * 359.97438 * 17 15 14 24 24 H 0.96996 * 119.99913 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00111 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47104 * 59.99708 * 10 9 7 27 27 H 1.09009 * 109.47034 * 299.99823 * 10 9 7 28 28 H 1.08002 * 119.99254 * 307.00954 * 11 10 9 29 29 H 1.07999 * 120.00401 * 187.56385 * 12 11 10 30 30 H 1.09004 * 109.47229 * 7.15231 * 13 12 11 31 31 H 1.09005 * 109.46819 * 247.15597 * 13 12 11 32 32 H 0.96999 * 119.99799 * 359.97438 * 14 13 12 33 33 H 1.07992 * 119.85558 * 359.96166 * 18 17 15 34 34 H 1.09007 * 109.61417 * 48.13977 * 19 18 17 35 35 H 1.08992 * 109.62036 * 168.50077 * 19 18 17 36 36 H 1.08998 * 109.21373 * 206.14854 * 20 19 18 37 37 H 1.09003 * 109.21105 * 325.46068 * 20 19 18 38 38 H 1.09009 * 108.55280 * 172.09567 * 21 20 19 39 39 H 1.08993 * 108.51229 * 54.44014 * 21 20 19 40 40 H 1.08995 * 109.20840 * 306.56996 * 22 21 20 41 41 H 1.09003 * 109.17331 * 187.23391 * 22 21 20 42 42 H 1.09004 * 109.61846 * 11.33023 * 23 17 15 43 43 H 1.08999 * 109.61976 * 131.69754 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0788 -4.8023 0.0001 12 6 1.1717 -5.7440 -0.9057 13 6 2.3533 -5.7763 -1.8405 14 7 2.9750 -7.1021 -1.7963 15 6 4.0562 -7.3653 -2.5567 16 8 4.5160 -6.5019 -3.2793 17 6 4.6807 -8.6963 -2.5118 18 6 5.7357 -8.9501 -3.2557 19 6 6.3868 -10.3166 -3.2169 20 6 7.1103 -10.4782 -1.8781 21 6 6.1534 -10.9782 -0.8078 22 6 5.0673 -9.9846 -0.4379 23 6 4.1065 -9.7683 -1.6097 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3880 0.0002 26 1 2.6847 -3.7145 0.8894 27 1 2.6847 -3.7145 -0.8906 28 1 0.3003 -4.8466 0.7474 29 1 0.4016 -6.4973 -0.9826 30 1 3.0799 -5.0238 -1.5339 31 1 2.0188 -5.5656 -2.8563 32 1 2.6084 -7.7906 -1.2197 33 1 6.1390 -8.1805 -3.8971 34 1 5.6235 -11.0885 -3.3160 35 1 7.1036 -10.4038 -4.0332 36 1 7.9281 -11.1890 -1.9959 37 1 7.5156 -9.5141 -1.5708 38 1 6.7279 -11.2150 0.0879 39 1 5.6809 -11.8928 -1.1660 40 1 5.5274 -9.0333 -0.1708 41 1 4.5095 -10.3658 0.4175 42 1 3.1354 -9.4476 -1.2325 43 1 3.9932 -10.6962 -2.1701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001668792351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:11 Heat of formation + Delta-G solvation = -4.707779 kcal Electronic energy + Delta-G solvation = -20922.621484 eV Core-core repulsion = 17775.206181 eV Total energy + Delta-G solvation = -3147.415303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17064 -38.20070 -36.52876 -34.54401 -33.11814 -32.68889 -32.07908 -30.37938 -26.97648 -25.87059 -25.05775 -24.07685 -22.47178 -21.42115 -20.67128 -19.25783 -17.96611 -17.40717 -16.75442 -16.40913 -15.70351 -15.12396 -14.98932 -14.74299 -14.38767 -13.99605 -13.80547 -13.61236 -13.42191 -13.24777 -13.11756 -12.62582 -12.44154 -12.29155 -11.98399 -11.70906 -11.44710 -11.05102 -11.02629 -10.95144 -10.82208 -10.79674 -10.40743 -9.99437 -9.89106 -9.76423 -9.32666 -9.11042 -8.99234 -8.57267 -6.90776 -5.75916 -3.04980 1.29476 2.28138 3.27903 3.40485 3.45464 3.51303 3.53711 4.28926 4.47499 4.48792 4.62714 4.66466 4.67074 4.86012 5.01927 5.03551 5.14894 5.28264 5.30754 5.37394 5.40948 5.49515 5.57501 5.70464 5.71801 5.75799 5.77574 5.83248 5.91330 5.97869 6.02398 6.22273 6.26857 6.36776 6.40430 6.55860 6.60918 6.88934 7.16006 7.56246 7.72125 8.26677 8.42647 9.54083 10.09964 10.45428 11.47026 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.117624 B =10099.314658 C =10403.112229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.728 5.728 10 C 0.161 3.839 11 C -0.109 4.109 12 C -0.199 4.199 13 C 0.140 3.860 14 N -0.719 5.719 15 C 0.548 3.452 16 O -0.544 6.544 17 C -0.178 4.178 18 C -0.073 4.073 19 C -0.096 4.096 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.080 4.080 24 H 0.255 0.745 25 H 0.385 0.615 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.113 0.887 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.398 0.602 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.613 -26.974 -2.623 28.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.372 5.372 10 C 0.035 3.965 11 C -0.128 4.128 12 C -0.219 4.219 13 C 0.018 3.982 14 N -0.371 5.371 15 C 0.336 3.664 16 O -0.423 6.423 17 C -0.181 4.181 18 C -0.092 4.092 19 C -0.133 4.133 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.118 4.118 24 H 0.065 0.935 25 H 0.218 0.782 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.234 0.766 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.068 -26.205 -3.122 28.246 hybrid contribution -0.278 0.696 0.296 0.806 sum 9.790 -25.509 -2.826 27.469 Atomic orbital electron populations 1.69675 1.05144 1.25600 1.57777 1.24761 0.95567 0.97764 1.02921 0.86088 0.78848 0.83925 0.77189 1.20456 1.21788 1.21826 1.19302 0.91137 0.83976 1.42656 0.91001 1.42279 1.05905 0.99518 1.89505 1.20012 0.92993 0.84754 0.98763 1.23291 0.99066 0.94752 0.95737 1.22591 0.98836 1.02103 0.98346 1.20572 0.94053 0.84076 0.99549 1.46014 1.30620 1.15279 1.45166 1.18418 0.80199 0.87912 0.79897 1.90810 1.63156 1.47760 1.40552 1.21224 0.99696 0.94698 1.02507 1.23332 0.93291 0.97853 0.94771 1.20954 0.99787 0.94363 0.98217 1.21310 0.97902 1.02001 0.94046 1.21174 0.96981 0.98718 0.98757 1.21311 0.96665 1.00192 0.97263 1.20776 0.98251 0.97144 0.95598 0.93528 0.78168 0.95437 0.94631 0.86885 0.87090 0.89292 0.91074 0.76616 0.85625 0.90387 0.90769 0.91418 0.91572 0.92132 0.92201 0.91511 0.91353 0.91335 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.06 55.49 0.72 -28.05 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.89 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.73 -19.06 5.59 -61.08 -0.34 -19.40 16 10 C 0.16 3.36 6.35 -5.19 -0.03 3.33 16 11 C -0.11 -1.80 9.63 -36.02 -0.35 -2.15 16 12 C -0.20 -2.79 9.63 -36.03 -0.35 -3.13 16 13 C 0.14 2.09 5.76 -5.20 -0.03 2.06 16 14 N -0.72 -8.95 5.51 -62.67 -0.35 -9.29 16 15 C 0.55 7.67 7.75 -12.67 -0.10 7.57 16 16 O -0.54 -9.97 16.18 5.26 0.09 -9.89 16 17 C -0.18 -1.83 5.10 -102.53 -0.52 -2.35 16 18 C -0.07 -0.69 8.93 -35.81 -0.32 -1.01 16 19 C -0.10 -0.62 5.61 -27.52 -0.15 -0.78 16 20 C -0.12 -0.71 5.69 -27.21 -0.15 -0.86 16 21 C -0.12 -0.68 5.27 -27.84 -0.15 -0.83 16 22 C -0.12 -0.78 5.67 -27.31 -0.15 -0.94 16 23 C -0.08 -0.58 5.36 -27.49 -0.15 -0.72 16 24 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.38 10.51 7.66 -40.82 -0.31 10.19 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.76 5.30 -51.92 -0.28 0.49 16 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 30 H 0.09 1.54 5.30 -51.93 -0.28 1.26 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.40 3.77 6.24 -40.82 -0.25 3.52 16 33 H 0.13 1.38 7.44 -52.49 -0.39 0.99 16 34 H 0.08 0.45 6.74 -51.93 -0.35 0.10 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.48 7.86 -51.93 -0.41 0.08 16 38 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 39 H 0.06 0.30 7.88 -51.93 -0.41 -0.11 16 40 H 0.07 0.55 7.85 -51.93 -0.41 0.14 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.44 5.99 -51.93 -0.31 0.13 16 43 H 0.08 0.48 6.76 -51.93 -0.35 0.13 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -33.61 343.57 -9.10 -42.71 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.67 Total: 8.25 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.70 Total: -7.41 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: 0.04 Total: -56.74 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.61 -9.10 -42.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668792351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.005 kcal (2) G-P(sol) polarization free energy of solvation -33.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds