Wall clock time and date at job start Tue Mar 31 2020 00:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48502 * 109.46998 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47206 * 300.00493 * 3 2 1 6 6 H 1.48504 * 109.46638 * 60.00667 * 3 2 1 7 7 C 1.38814 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99891 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99766 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47409 * 179.97438 * 10 9 7 12 12 C 1.30997 * 120.00425 * 127.00135 * 11 10 9 13 13 C 1.50700 * 119.99695 * 7.56382 * 12 11 10 14 14 N 1.46495 * 109.47250 * 127.15737 * 13 12 11 15 15 C 1.34777 * 120.00512 * 179.97438 * 14 13 12 16 16 O 1.21616 * 119.99581 * 0.02562 * 15 14 13 17 17 C 1.47096 * 120.00524 * 179.97438 * 15 14 13 18 18 C 1.31557 * 119.85484 * 179.97438 * 17 15 14 19 19 C 1.51415 * 120.29278 * 179.97438 * 18 17 15 20 20 C 1.53031 * 108.72638 * 288.32494 * 19 18 17 21 21 C 1.52028 * 110.67538 * 85.52844 * 20 19 18 22 22 C 1.51783 * 113.99143 * 293.27873 * 21 20 19 23 23 C 1.51418 * 119.85229 * 359.97438 * 17 15 14 24 24 H 0.96996 * 119.99913 * 359.97438 * 1 2 3 25 25 H 0.96997 * 120.00111 * 359.97438 * 9 7 2 26 26 H 1.08998 * 109.47104 * 59.99708 * 10 9 7 27 27 H 1.09009 * 109.47034 * 299.99823 * 10 9 7 28 28 H 1.08002 * 119.99254 * 307.00954 * 11 10 9 29 29 H 1.07999 * 120.00401 * 187.56385 * 12 11 10 30 30 H 1.09004 * 109.47229 * 7.15231 * 13 12 11 31 31 H 1.09005 * 109.46819 * 247.15597 * 13 12 11 32 32 H 0.96999 * 119.99799 * 359.97438 * 14 13 12 33 33 H 1.07992 * 119.85558 * 359.96166 * 18 17 15 34 34 H 1.09007 * 109.61417 * 48.13977 * 19 18 17 35 35 H 1.08992 * 109.62036 * 168.50077 * 19 18 17 36 36 H 1.08998 * 109.21373 * 206.14854 * 20 19 18 37 37 H 1.09003 * 109.21105 * 325.46068 * 20 19 18 38 38 H 1.09009 * 108.55280 * 172.09567 * 21 20 19 39 39 H 1.08993 * 108.51229 * 54.44014 * 21 20 19 40 40 H 1.08995 * 109.20840 * 306.56996 * 22 21 20 41 41 H 1.09003 * 109.17331 * 187.23391 * 22 21 20 42 42 H 1.09004 * 109.61846 * 11.33023 * 23 17 15 43 43 H 1.08999 * 109.61976 * 131.69754 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0788 -4.8023 0.0001 12 6 1.1717 -5.7440 -0.9057 13 6 2.3533 -5.7763 -1.8405 14 7 2.9750 -7.1021 -1.7963 15 6 4.0562 -7.3653 -2.5567 16 8 4.5160 -6.5019 -3.2793 17 6 4.6807 -8.6963 -2.5118 18 6 5.7357 -8.9501 -3.2557 19 6 6.3868 -10.3166 -3.2169 20 6 7.1103 -10.4782 -1.8781 21 6 6.1534 -10.9782 -0.8078 22 6 5.0673 -9.9846 -0.4379 23 6 4.1065 -9.7683 -1.6097 24 1 -0.4850 0.8400 0.0004 25 1 0.3555 -2.3880 0.0002 26 1 2.6847 -3.7145 0.8894 27 1 2.6847 -3.7145 -0.8906 28 1 0.3003 -4.8466 0.7474 29 1 0.4016 -6.4973 -0.9826 30 1 3.0799 -5.0238 -1.5339 31 1 2.0188 -5.5656 -2.8563 32 1 2.6084 -7.7906 -1.2197 33 1 6.1390 -8.1805 -3.8971 34 1 5.6235 -11.0885 -3.3160 35 1 7.1036 -10.4038 -4.0332 36 1 7.9281 -11.1890 -1.9959 37 1 7.5156 -9.5141 -1.5708 38 1 6.7279 -11.2150 0.0879 39 1 5.6809 -11.8928 -1.1660 40 1 5.5274 -9.0333 -0.1708 41 1 4.5095 -10.3658 0.4175 42 1 3.1354 -9.4476 -1.2325 43 1 3.9932 -10.6962 -2.1701 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001668792351.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:10 Heat of formation + Delta-G solvation = -26.777993 kcal Electronic energy + Delta-G solvation = -20923.578520 eV Core-core repulsion = 17775.206181 eV Total energy + Delta-G solvation = -3148.372339 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17563 -38.96904 -37.96155 -36.17316 -34.55628 -33.48530 -32.86042 -32.19218 -28.35208 -26.90724 -26.29788 -24.85463 -24.41357 -22.37999 -21.21218 -20.47499 -19.43878 -18.57612 -18.08086 -17.63102 -16.89913 -16.46672 -15.99286 -15.80783 -15.53855 -15.34127 -15.09140 -14.79942 -14.48573 -14.25599 -14.13222 -13.91573 -13.75092 -13.31233 -12.97564 -12.91382 -12.76071 -12.56697 -12.16107 -12.09616 -11.93795 -11.68929 -11.58758 -11.50696 -11.31722 -11.06401 -10.95646 -10.40947 -10.08781 -9.85069 -9.02175 -8.00158 -5.29818 0.41974 1.02367 1.44984 1.46178 1.56627 2.25060 2.34015 2.54207 3.33311 3.66173 3.75294 3.77742 4.00566 4.08656 4.11132 4.13851 4.15793 4.23899 4.31482 4.48288 4.55513 4.60465 4.74963 4.81370 4.86396 4.88257 4.89374 4.97573 5.04911 5.24933 5.28050 5.29900 5.33863 5.35205 5.43457 5.52437 5.54811 5.56157 5.66889 5.83225 6.22842 6.54637 7.20268 7.28722 8.01814 8.27198 9.23493 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028649 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.117624 B =10099.314658 C =10403.112229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.976 3.024 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.251 4.251 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.160 3.840 11 C -0.133 4.133 12 C -0.159 4.159 13 C 0.139 3.861 14 N -0.704 5.704 15 C 0.540 3.460 16 O -0.598 6.598 17 C -0.188 4.188 18 C -0.069 4.069 19 C -0.090 4.090 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.074 4.074 24 H 0.253 0.747 25 H 0.376 0.624 26 H 0.025 0.975 27 H 0.030 0.970 28 H 0.128 0.872 29 H 0.152 0.848 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.044 0.956 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.822 -29.659 -2.296 31.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.193 1.193 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.090 0.910 9 N -0.384 5.384 10 C 0.035 3.965 11 C -0.152 4.152 12 C -0.178 4.178 13 C 0.016 3.984 14 N -0.356 5.356 15 C 0.330 3.670 16 O -0.481 6.481 17 C -0.191 4.191 18 C -0.089 4.089 19 C -0.127 4.127 20 C -0.152 4.152 21 C -0.157 4.157 22 C -0.154 4.154 23 C -0.111 4.111 24 H 0.062 0.938 25 H 0.208 0.792 26 H 0.042 0.958 27 H 0.048 0.952 28 H 0.145 0.855 29 H 0.170 0.830 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.255 0.745 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.288 -28.951 -2.764 30.849 hybrid contribution -0.263 1.451 0.127 1.480 sum 10.026 -27.500 -2.636 29.389 Atomic orbital electron populations 1.69817 1.06565 1.26233 1.59165 1.25606 0.96515 1.01171 1.03313 0.85045 0.78097 0.79507 0.76937 1.19286 1.21788 1.21447 1.19665 0.91446 0.85378 1.41769 0.90965 1.42474 1.05706 1.00749 1.89452 1.20078 0.93793 0.84514 0.98125 1.23048 0.99451 0.94479 0.98201 1.22782 0.98172 1.01449 0.95432 1.20383 0.94019 0.84806 0.99192 1.45822 1.30115 1.14667 1.45027 1.19138 0.79995 0.88933 0.78937 1.90780 1.64681 1.49753 1.42879 1.21252 1.00163 0.93594 1.04070 1.23533 0.92830 0.99018 0.93470 1.21013 1.00282 0.92464 0.98938 1.21322 0.98487 1.01537 0.93854 1.21187 0.96707 0.98921 0.98836 1.21321 0.96987 0.99513 0.97571 1.20835 0.98456 0.96649 0.95205 0.93774 0.79170 0.95766 0.95238 0.85462 0.83012 0.92139 0.92085 0.74501 0.88023 0.88603 0.89719 0.89752 0.93439 0.91675 0.90548 0.93711 0.89876 0.90404 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 2 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 3 Si 0.98 47.59 29.55 68.60 2.03 49.62 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 7 C -0.25 -14.72 9.99 84.03 0.84 -13.88 16 8 H 0.07 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -39.58 5.59 -347.16 -1.94 -41.53 16 10 C 0.16 6.80 6.35 85.63 0.54 7.34 16 11 C -0.13 -4.24 9.63 25.65 0.25 -4.00 16 12 C -0.16 -4.12 9.63 25.65 0.25 -3.88 16 13 C 0.14 4.14 5.76 85.63 0.49 4.63 16 14 N -0.70 -16.91 5.51 -470.45 -2.59 -19.50 16 15 C 0.54 15.27 7.75 86.57 0.67 15.94 16 16 O -0.60 -23.03 16.18 -4.08 -0.07 -23.10 16 17 C -0.19 -3.70 5.10 -17.88 -0.09 -3.79 16 18 C -0.07 -1.28 8.93 25.34 0.23 -1.05 16 19 C -0.09 -0.97 5.61 30.09 0.17 -0.80 16 20 C -0.11 -1.16 5.69 30.28 0.17 -0.99 16 21 C -0.12 -1.03 5.27 29.87 0.16 -0.87 16 22 C -0.12 -1.28 5.67 30.22 0.17 -1.11 16 23 C -0.07 -0.87 5.36 30.10 0.16 -0.71 16 24 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 25 H 0.38 20.99 7.66 -92.71 -0.71 20.28 16 26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.03 1.31 5.30 -2.38 -0.01 1.30 16 28 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 30 H 0.06 2.18 5.30 -2.39 -0.01 2.16 16 31 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.42 6.91 6.24 -92.71 -0.58 6.33 16 33 H 0.10 2.37 7.44 -2.91 -0.02 2.35 16 34 H 0.10 0.75 6.74 -2.38 -0.02 0.74 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.05 0.66 7.86 -2.39 -0.02 0.64 16 38 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.08 0.45 7.88 -2.39 -0.02 0.43 16 40 H 0.04 0.69 7.85 -2.39 -0.02 0.67 16 41 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.08 0.75 5.99 -2.39 -0.01 0.73 16 43 H 0.10 0.81 6.76 -2.39 -0.02 0.79 16 Total: -1.00 -74.98 343.57 1.91 -73.07 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: -0.27 Total: 28.75 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 4.47 Total: -7.07 kcal Atomic # 7 Polarization: -117.01 SS G_CDS: -4.25 Total: -121.26 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.07 Total: -23.10 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -74.98 1.91 -73.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001668792351.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.289 kcal (2) G-P(sol) polarization free energy of solvation -74.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds