Wall clock time and date at job start Tue Mar 31 2020 00:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99504 * 2 1 4 4 H 1.48492 * 109.47417 * 244.99636 * 3 2 1 5 5 H 1.48498 * 109.47257 * 5.00225 * 3 2 1 6 6 H 1.48506 * 109.46872 * 124.99989 * 3 2 1 7 7 C 1.38809 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00133 * 185.88537 * 7 2 1 9 9 N 1.36936 * 119.99659 * 5.88931 * 7 2 1 10 10 C 1.46504 * 119.99903 * 184.89623 * 9 7 2 11 11 C 1.53003 * 115.54893 * 294.93220 * 10 9 7 12 12 N 1.46500 * 109.46745 * 280.72974 * 11 10 9 13 13 C 1.34782 * 119.99366 * 184.85566 * 12 11 10 14 14 O 1.21273 * 120.00150 * 5.09206 * 13 12 11 15 15 C 1.50702 * 119.99729 * 185.08687 * 13 12 11 16 16 C 1.51838 * 108.65237 * 155.54450 * 15 13 12 17 17 C 1.53032 * 110.72014 * 187.58241 * 16 15 13 18 18 C 1.51376 * 108.61248 * 274.28155 * 17 16 15 19 19 C 1.29518 * 120.35727 * 71.90277 * 18 17 16 20 20 C 1.51379 * 120.36555 * 359.97438 * 19 18 17 21 21 C 1.51772 * 108.58789 * 279.65286 * 15 13 12 22 22 C 1.53004 * 117.49850 * 80.60038 * 10 9 7 23 23 C 1.53000 * 117.49975 * 149.26154 * 10 9 7 24 24 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00314 * 4.89518 * 9 7 2 26 26 H 1.08997 * 109.46964 * 160.72950 * 11 10 9 27 27 H 1.08997 * 109.47180 * 40.73242 * 11 10 9 28 28 H 0.96990 * 120.00088 * 4.86139 * 12 11 10 29 29 H 1.09002 * 108.49106 * 37.58331 * 15 13 12 30 30 H 1.08999 * 109.22532 * 67.27151 * 16 15 13 31 31 H 1.09007 * 109.22048 * 307.88495 * 16 15 13 32 32 H 1.08996 * 109.61051 * 34.02199 * 17 16 15 33 33 H 1.09000 * 109.61470 * 154.54809 * 17 16 15 34 34 H 1.08002 * 119.82364 * 251.87131 * 18 17 16 35 35 H 1.08002 * 119.82179 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.60953 * 47.83956 * 20 19 18 37 37 H 1.08998 * 109.61332 * 168.36523 * 20 19 18 38 38 H 1.08994 * 109.24082 * 52.05386 * 21 15 13 39 39 H 1.09002 * 109.19491 * 292.67578 * 21 15 13 40 40 H 1.09003 * 117.49715 * 215.00558 * 22 10 9 41 41 H 1.08999 * 117.49693 * 0.02562 * 22 10 9 42 42 H 1.08995 * 117.49967 * 359.97438 * 23 10 9 43 43 H 1.08995 * 117.49689 * 144.97822 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0100 1.7508 -1.2688 5 1 1.2896 2.7438 0.1221 6 1 3.1931 1.6450 1.1469 7 6 2.0104 -1.2021 -0.0005 8 1 3.0861 -1.2045 0.0954 9 7 1.3311 -2.3848 -0.1228 10 6 2.0501 -3.6568 -0.0158 11 6 3.0752 -3.9301 -1.1183 12 7 2.3841 -4.3972 -2.3227 13 6 3.0954 -4.7946 -3.3963 14 8 4.3051 -4.8535 -3.3343 15 6 2.3874 -5.1660 -4.6738 16 6 3.3494 -4.9802 -5.8338 17 6 2.6273 -5.1630 -7.1706 18 6 2.6106 -6.6374 -7.5131 19 6 1.8516 -7.4540 -6.8540 20 6 0.9718 -6.9446 -5.7323 21 6 1.8599 -6.5828 -4.5403 22 6 2.3693 -4.1720 1.3890 23 6 1.2857 -4.8549 0.5508 24 1 -0.4850 0.8400 0.0004 25 1 0.3740 -2.3804 -0.2801 26 1 3.7756 -4.6944 -0.7818 27 1 3.6191 -3.0129 -1.3442 28 1 1.4148 -4.4204 -2.3474 29 1 1.5427 -4.4907 -4.8098 30 1 4.1515 -5.7142 -5.7559 31 1 3.7750 -3.9776 -5.7900 32 1 1.6047 -4.7951 -7.0873 33 1 3.1546 -4.6124 -7.9496 34 1 3.2347 -7.0104 -8.3118 35 1 1.8462 -8.5042 -7.1059 36 1 0.4295 -6.0599 -6.0658 37 1 0.2653 -7.7214 -5.4399 38 1 1.2786 -6.6646 -3.6219 39 1 2.7003 -7.2755 -4.4957 40 1 3.3096 -4.7056 1.5278 41 1 2.0440 -3.5647 2.2337 42 1 0.2480 -4.6967 0.8444 43 1 1.5128 -5.8377 0.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670900518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:58 Heat of formation + Delta-G solvation = -0.936338 kcal Electronic energy + Delta-G solvation = -21865.322030 eV Core-core repulsion = 18718.070270 eV Total energy + Delta-G solvation = -3147.251761 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07892 -38.15109 -37.25367 -33.76060 -33.04669 -32.66455 -31.93265 -29.72000 -27.17648 -25.26846 -24.06794 -23.90206 -21.97663 -21.18983 -19.78135 -19.02897 -18.15686 -17.21847 -16.97494 -16.37842 -15.72206 -15.11562 -14.86035 -14.51532 -14.20582 -13.88611 -13.43926 -13.35978 -13.12596 -13.08071 -13.05981 -12.23176 -12.08021 -11.91305 -11.71384 -11.38516 -11.06035 -10.95572 -10.84161 -10.80255 -10.71517 -10.45076 -10.30804 -10.29500 -9.72506 -9.62090 -9.34593 -9.12173 -8.81841 -8.57144 -7.08954 -5.85169 -3.15463 2.15409 2.95387 3.41084 3.45841 3.46758 3.48906 4.41442 4.46954 4.58060 4.71325 4.82184 4.91064 5.00062 5.05955 5.22402 5.28730 5.30191 5.40480 5.45018 5.47165 5.56685 5.62889 5.63473 5.73416 5.81598 5.83490 5.97357 6.06759 6.09410 6.12135 6.25536 6.31124 6.43204 6.52455 6.56181 6.65359 6.76921 6.78068 6.88843 7.67714 7.91480 8.33034 8.57305 9.43870 9.97364 10.32987 11.36404 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.004154 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.967910 B = 6738.554435 C = 7380.180147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.689 5.689 10 C 0.128 3.872 11 C 0.147 3.853 12 N -0.711 5.711 13 C 0.511 3.489 14 O -0.552 6.552 15 C -0.102 4.102 16 C -0.094 4.094 17 C -0.093 4.093 18 C -0.155 4.155 19 C -0.161 4.161 20 C -0.090 4.090 21 C -0.103 4.103 22 C -0.187 4.187 23 C -0.185 4.185 24 H 0.256 0.744 25 H 0.387 0.613 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.400 0.600 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -14.694 -11.116 18.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.328 5.328 10 C 0.033 3.967 11 C 0.022 3.978 12 N -0.361 5.361 13 C 0.296 3.704 14 O -0.430 6.430 15 C -0.124 4.124 16 C -0.132 4.132 17 C -0.130 4.130 18 C -0.173 4.173 19 C -0.179 4.179 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.228 4.228 23 C -0.223 4.223 24 H 0.066 0.934 25 H 0.222 0.778 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.234 0.766 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.092 -14.508 -11.017 18.336 hybrid contribution -0.330 0.956 0.051 1.013 sum 1.763 -13.551 -10.965 17.521 Atomic orbital electron populations 1.69669 1.05126 1.25965 1.57087 1.24738 0.95479 0.97740 1.02511 0.86265 0.78590 0.83357 0.78002 1.21266 1.21678 1.21010 1.19124 0.91443 0.83685 1.42770 0.91043 1.41769 1.07462 0.98324 1.85257 1.20180 0.96621 0.87606 0.92244 1.21224 0.93977 0.98931 0.83707 1.45959 1.10452 1.65231 1.14437 1.20676 0.87845 0.76843 0.85000 1.90657 1.14338 1.53930 1.84048 1.20984 0.99466 0.98564 0.93375 1.21082 0.97540 1.03038 0.91568 1.20856 1.01222 0.93756 0.97179 1.22575 0.99306 0.95746 0.99648 1.22535 0.98696 0.99123 0.97554 1.20807 0.96926 1.01215 0.93781 1.21197 0.99771 0.94827 0.98253 1.23369 0.98501 1.03823 0.97107 1.23070 0.97721 0.96016 1.05471 0.93376 0.77813 0.92192 0.90836 0.76561 0.89326 0.90846 0.91203 0.90879 0.91265 0.87677 0.87683 0.90726 0.91191 0.91162 0.91193 0.89973 0.88605 0.89020 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.18 13.09 55.49 0.73 -26.46 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.14 29.56 -169.99 -5.02 17.11 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.24 -6.42 9.56 -15.06 -0.14 -6.57 16 8 H 0.07 1.90 7.76 -52.49 -0.41 1.50 16 9 N -0.69 -16.31 5.49 -47.23 -0.26 -16.57 16 10 C 0.13 2.42 2.14 -131.81 -0.28 2.14 16 11 C 0.15 2.69 5.74 -4.04 -0.02 2.67 16 12 N -0.71 -11.31 5.52 -60.29 -0.33 -11.64 16 13 C 0.51 8.13 6.81 -10.98 -0.07 8.06 16 14 O -0.55 -10.77 16.12 5.56 0.09 -10.68 16 15 C -0.10 -1.23 2.02 -92.98 -0.19 -1.42 16 16 C -0.09 -1.12 4.31 -27.30 -0.12 -1.24 16 17 C -0.09 -0.88 5.62 -27.53 -0.15 -1.04 16 18 C -0.15 -1.40 9.34 -35.28 -0.33 -1.73 16 19 C -0.16 -1.41 9.34 -35.28 -0.33 -1.74 16 20 C -0.09 -0.77 5.61 -27.56 -0.15 -0.93 16 21 C -0.10 -1.04 4.89 -27.36 -0.13 -1.18 16 22 C -0.19 -3.27 10.11 -26.69 -0.27 -3.54 16 23 C -0.18 -2.93 10.15 -26.69 -0.27 -3.20 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.39 9.70 8.07 -40.82 -0.33 9.37 16 26 H 0.06 1.06 7.92 -51.93 -0.41 0.65 16 27 H 0.07 1.56 7.72 -51.93 -0.40 1.16 16 28 H 0.40 5.76 8.48 -40.82 -0.35 5.41 16 29 H 0.09 0.99 7.89 -51.93 -0.41 0.58 16 30 H 0.07 0.95 7.76 -51.93 -0.40 0.55 16 31 H 0.07 0.91 8.10 -51.92 -0.42 0.49 16 32 H 0.07 0.67 6.68 -51.93 -0.35 0.32 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.11 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.07 0.63 6.68 -51.93 -0.35 0.28 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 40 H 0.08 1.28 8.09 -51.93 -0.42 0.86 16 41 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 348.47 15.07 5.25 5.25 Total: -1.00 -30.43 348.47 -9.28 -39.71 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -7.17 Total: 13.33 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: -2.57 Total: -10.05 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 0.13 Total: -54.67 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.43 -9.28 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670900518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.772 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds