Wall clock time and date at job start Tue Mar 31 2020 00:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99504 * 2 1 4 4 H 1.48492 * 109.47417 * 244.99636 * 3 2 1 5 5 H 1.48498 * 109.47257 * 5.00225 * 3 2 1 6 6 H 1.48506 * 109.46872 * 124.99989 * 3 2 1 7 7 C 1.38809 * 120.00524 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00133 * 185.88537 * 7 2 1 9 9 N 1.36936 * 119.99659 * 5.88931 * 7 2 1 10 10 C 1.46504 * 119.99903 * 184.89623 * 9 7 2 11 11 C 1.53003 * 115.54893 * 294.93220 * 10 9 7 12 12 N 1.46500 * 109.46745 * 280.72974 * 11 10 9 13 13 C 1.34782 * 119.99366 * 184.85566 * 12 11 10 14 14 O 1.21273 * 120.00150 * 5.09206 * 13 12 11 15 15 C 1.50702 * 119.99729 * 185.08687 * 13 12 11 16 16 C 1.51838 * 108.65237 * 155.54450 * 15 13 12 17 17 C 1.53032 * 110.72014 * 187.58241 * 16 15 13 18 18 C 1.51376 * 108.61248 * 274.28155 * 17 16 15 19 19 C 1.29518 * 120.35727 * 71.90277 * 18 17 16 20 20 C 1.51379 * 120.36555 * 359.97438 * 19 18 17 21 21 C 1.51772 * 108.58789 * 279.65286 * 15 13 12 22 22 C 1.53004 * 117.49850 * 80.60038 * 10 9 7 23 23 C 1.53000 * 117.49975 * 149.26154 * 10 9 7 24 24 H 0.96998 * 120.00284 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00314 * 4.89518 * 9 7 2 26 26 H 1.08997 * 109.46964 * 160.72950 * 11 10 9 27 27 H 1.08997 * 109.47180 * 40.73242 * 11 10 9 28 28 H 0.96990 * 120.00088 * 4.86139 * 12 11 10 29 29 H 1.09002 * 108.49106 * 37.58331 * 15 13 12 30 30 H 1.08999 * 109.22532 * 67.27151 * 16 15 13 31 31 H 1.09007 * 109.22048 * 307.88495 * 16 15 13 32 32 H 1.08996 * 109.61051 * 34.02199 * 17 16 15 33 33 H 1.09000 * 109.61470 * 154.54809 * 17 16 15 34 34 H 1.08002 * 119.82364 * 251.87131 * 18 17 16 35 35 H 1.08002 * 119.82179 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.60953 * 47.83956 * 20 19 18 37 37 H 1.08998 * 109.61332 * 168.36523 * 20 19 18 38 38 H 1.08994 * 109.24082 * 52.05386 * 21 15 13 39 39 H 1.09002 * 109.19491 * 292.67578 * 21 15 13 40 40 H 1.09003 * 117.49715 * 215.00558 * 22 10 9 41 41 H 1.08999 * 117.49693 * 0.02562 * 22 10 9 42 42 H 1.08995 * 117.49967 * 359.97438 * 23 10 9 43 43 H 1.08995 * 117.49689 * 144.97822 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0100 1.7508 -1.2688 5 1 1.2896 2.7438 0.1221 6 1 3.1931 1.6450 1.1469 7 6 2.0104 -1.2021 -0.0005 8 1 3.0861 -1.2045 0.0954 9 7 1.3311 -2.3848 -0.1228 10 6 2.0501 -3.6568 -0.0158 11 6 3.0752 -3.9301 -1.1183 12 7 2.3841 -4.3972 -2.3227 13 6 3.0954 -4.7946 -3.3963 14 8 4.3051 -4.8535 -3.3343 15 6 2.3874 -5.1660 -4.6738 16 6 3.3494 -4.9802 -5.8338 17 6 2.6273 -5.1630 -7.1706 18 6 2.6106 -6.6374 -7.5131 19 6 1.8516 -7.4540 -6.8540 20 6 0.9718 -6.9446 -5.7323 21 6 1.8599 -6.5828 -4.5403 22 6 2.3693 -4.1720 1.3890 23 6 1.2857 -4.8549 0.5508 24 1 -0.4850 0.8400 0.0004 25 1 0.3740 -2.3804 -0.2801 26 1 3.7756 -4.6944 -0.7818 27 1 3.6191 -3.0129 -1.3442 28 1 1.4148 -4.4204 -2.3474 29 1 1.5427 -4.4907 -4.8098 30 1 4.1515 -5.7142 -5.7559 31 1 3.7750 -3.9776 -5.7900 32 1 1.6047 -4.7951 -7.0873 33 1 3.1546 -4.6124 -7.9496 34 1 3.2347 -7.0104 -8.3118 35 1 1.8462 -8.5042 -7.1059 36 1 0.4295 -6.0599 -6.0658 37 1 0.2653 -7.7214 -5.4399 38 1 1.2786 -6.6646 -3.6219 39 1 2.7003 -7.2755 -4.4957 40 1 3.3096 -4.7056 1.5278 41 1 2.0440 -3.5647 2.2337 42 1 0.2480 -4.6967 0.8444 43 1 1.5128 -5.8377 0.1379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670900518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:57 Heat of formation + Delta-G solvation = -19.651925 kcal Electronic energy + Delta-G solvation = -21866.133599 eV Core-core repulsion = 18718.070270 eV Total energy + Delta-G solvation = -3148.063329 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26559 -39.36357 -38.51249 -35.30904 -34.82598 -33.57408 -32.72648 -31.65875 -28.43609 -26.30461 -25.90254 -24.86598 -23.32257 -22.26837 -21.07108 -20.44600 -19.15078 -18.85143 -18.27290 -17.32974 -17.20180 -16.47580 -16.14217 -15.91924 -15.50672 -15.28370 -14.99096 -14.61595 -14.42675 -14.03853 -13.85829 -13.61101 -13.44824 -13.16218 -12.99825 -12.78089 -12.57858 -12.32019 -12.24187 -12.11800 -12.00319 -11.72788 -11.59046 -11.52241 -11.20669 -10.98677 -10.96929 -10.53029 -10.01773 -9.83420 -9.04165 -7.96881 -5.25315 1.45805 1.46184 1.47290 1.53258 1.68835 2.21519 2.52309 3.08379 3.37064 3.61943 3.65407 3.74288 3.84903 3.88796 4.12945 4.18784 4.24682 4.28023 4.32124 4.49194 4.53624 4.64136 4.68260 4.79807 4.81647 4.90523 4.92842 4.95567 5.02888 5.08406 5.17159 5.17438 5.23966 5.32653 5.37541 5.41950 5.53067 5.54173 5.84994 6.10133 6.26049 6.63873 7.29073 7.32208 8.05160 8.29625 9.24935 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.004154 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.967910 B = 6738.554435 C = 7380.180147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.065 4.065 3 Si 0.963 3.037 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.234 4.234 8 H 0.067 0.933 9 N -0.697 5.697 10 C 0.101 3.899 11 C 0.159 3.841 12 N -0.705 5.705 13 C 0.507 3.493 14 O -0.591 6.591 15 C -0.094 4.094 16 C -0.092 4.092 17 C -0.088 4.088 18 C -0.166 4.166 19 C -0.162 4.162 20 C -0.088 4.088 21 C -0.097 4.097 22 C -0.187 4.187 23 C -0.150 4.150 24 H 0.251 0.749 25 H 0.378 0.622 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.410 0.590 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -16.390 -11.743 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.258 4.258 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.365 4.365 8 H 0.085 0.915 9 N -0.336 5.336 10 C 0.009 3.991 11 C 0.033 3.967 12 N -0.355 5.355 13 C 0.295 3.705 14 O -0.472 6.472 15 C -0.115 4.115 16 C -0.130 4.130 17 C -0.125 4.125 18 C -0.184 4.184 19 C -0.180 4.180 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.228 4.228 23 C -0.188 4.188 24 H 0.060 0.940 25 H 0.211 0.789 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.245 0.755 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.637 -16.243 -11.641 20.051 hybrid contribution -0.124 1.403 0.266 1.433 sum 1.514 -14.840 -11.375 18.759 Atomic orbital electron populations 1.69791 1.06230 1.26077 1.59144 1.25388 0.96228 1.00490 1.03652 0.85376 0.77425 0.80043 0.77934 1.21215 1.21952 1.20418 1.19363 0.91409 0.85068 1.40704 0.91472 1.41787 1.07102 0.99271 1.85411 1.20348 0.98220 0.87264 0.93298 1.20923 0.93783 0.97607 0.84371 1.45916 1.10867 1.64808 1.13927 1.21417 0.87494 0.75697 0.85880 1.90637 1.16232 1.55594 1.84748 1.21037 0.99314 1.00248 0.90938 1.21045 0.97426 1.01447 0.93093 1.20807 1.01311 0.94632 0.95756 1.22668 0.99947 0.95350 1.00395 1.22735 0.98250 0.99795 0.97211 1.20817 0.96799 1.01981 0.92889 1.21179 0.99771 0.92884 0.99690 1.23373 1.00340 1.03804 0.95241 1.23135 0.97221 0.95783 1.02649 0.93977 0.78870 0.91254 0.94496 0.75468 0.88029 0.92333 0.93045 0.90170 0.90532 0.86761 0.86405 0.90301 0.89474 0.90175 0.92233 0.87726 0.90463 0.88921 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.91 13.09 21.65 0.28 -56.62 16 2 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 3 Si 0.96 45.98 29.56 68.60 2.03 48.01 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.23 -12.65 9.56 84.03 0.80 -11.85 16 8 H 0.07 3.63 7.76 -2.91 -0.02 3.60 16 9 N -0.70 -33.07 5.49 -303.33 -1.66 -34.73 16 10 C 0.10 3.74 2.14 3.61 0.01 3.75 16 11 C 0.16 5.75 5.74 86.38 0.50 6.25 16 12 N -0.71 -21.77 5.52 -463.06 -2.56 -24.33 16 13 C 0.51 15.91 6.81 87.66 0.60 16.51 16 14 O -0.59 -23.32 16.12 -3.01 -0.05 -23.37 16 15 C -0.09 -2.15 2.02 -12.33 -0.02 -2.18 16 16 C -0.09 -2.15 4.31 30.22 0.13 -2.02 16 17 C -0.09 -1.55 5.62 30.07 0.17 -1.38 16 18 C -0.17 -2.68 9.34 27.38 0.26 -2.42 16 19 C -0.16 -2.43 9.34 27.38 0.26 -2.18 16 20 C -0.09 -1.25 5.61 30.06 0.17 -1.08 16 21 C -0.10 -1.77 4.89 30.19 0.15 -1.62 16 22 C -0.19 -6.22 10.11 30.62 0.31 -5.91 16 23 C -0.15 -4.36 10.15 30.62 0.31 -4.05 16 24 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 25 H 0.38 19.05 8.07 -92.71 -0.75 18.30 16 26 H 0.07 2.37 7.92 -2.39 -0.02 2.35 16 27 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 28 H 0.41 11.13 8.48 -92.72 -0.79 10.35 16 29 H 0.10 2.08 7.89 -2.39 -0.02 2.06 16 30 H 0.06 1.53 7.76 -2.39 -0.02 1.51 16 31 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 32 H 0.08 1.30 6.68 -2.39 -0.02 1.28 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.12 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.08 1.09 6.68 -2.39 -0.02 1.07 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.08 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 40 H 0.10 2.99 8.09 -2.39 -0.02 2.98 16 41 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 42 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -66.06 348.47 1.60 -64.47 By element: Atomic # 1 Polarization: 38.45 SS G_CDS: -0.53 Total: 37.92 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.09 Total: -11.34 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.94 Total: -115.69 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -66.06 1.60 -64.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670900518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.815 kcal (2) G-P(sol) polarization free energy of solvation -66.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds