Wall clock time and date at job start Tue Mar 31 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 H 1.08994 * 110.34068 * 307.28400 * 18 17 15 20 20 C 1.51095 * 110.38716 * 69.69344 * 18 17 15 21 21 C 1.30530 * 111.10291 * 135.24601 * 20 18 17 22 22 C 1.51102 * 111.10280 * 0.02562 * 21 20 18 23 23 C 1.54632 * 104.72559 * 343.55511 * 22 21 20 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 28 28 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 29 29 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 30 30 H 1.09003 * 113.61268 * 89.11946 * 12 11 10 31 31 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 32 32 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 33 33 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 34 34 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 35 35 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 36 36 H 1.08003 * 124.44676 * 315.22900 * 20 18 17 37 37 H 1.07997 * 124.44576 * 180.02562 * 21 20 18 38 38 H 1.09008 * 110.38131 * 224.74960 * 22 21 20 39 39 H 1.08998 * 110.48292 * 102.42352 * 22 21 20 40 40 H 1.08997 * 111.03758 * 266.60362 * 23 22 21 41 41 H 1.09001 * 111.06995 * 142.68408 * 23 22 21 42 42 H 1.08999 * 113.61567 * 334.48111 * 24 10 9 43 43 H 1.08998 * 113.61196 * 105.38466 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 1 -0.2151 -9.7750 4.8822 20 6 0.2002 -11.3407 3.4680 21 6 0.2129 -12.5405 3.9819 22 6 0.6675 -12.5105 5.4226 23 6 1.3386 -11.1280 5.5943 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0560 -3.5693 -0.4293 28 1 2.9742 -4.3216 1.9018 29 1 1.1688 -4.1300 1.9705 30 1 2.8068 -6.1596 0.2833 31 1 0.0882 -6.1151 1.7060 32 1 0.4334 -7.2968 0.4205 33 1 2.5317 -7.3971 2.3080 34 1 2.4196 -9.8859 3.3348 35 1 2.0731 -8.7043 4.6201 36 1 -0.0903 -11.1139 2.4528 37 1 -0.0651 -13.4369 3.4475 38 1 1.3868 -13.3077 5.6104 39 1 -0.1861 -12.6043 6.0939 40 1 2.4131 -11.1906 5.4220 41 1 1.1260 -10.7086 6.5776 42 1 0.1684 -4.7076 -0.4690 43 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689388074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:52 Heat of formation + Delta-G solvation = -3.192531 kcal Electronic energy + Delta-G solvation = -20731.328285 eV Core-core repulsion = 17583.978689 eV Total energy + Delta-G solvation = -3147.349597 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.14451 -38.84104 -38.08892 -34.64320 -33.28650 -31.86075 -30.23686 -29.18427 -27.62950 -25.30164 -25.07962 -23.74022 -21.10155 -20.87955 -20.45976 -19.12939 -18.80009 -17.16681 -16.95805 -16.28566 -16.06523 -15.44027 -15.25755 -14.75137 -14.60560 -13.83899 -13.67101 -13.47087 -13.01723 -12.74495 -12.26784 -12.11339 -12.08363 -11.90580 -11.81076 -11.52275 -11.39859 -11.35469 -11.23615 -11.01533 -10.85567 -10.52938 -10.24650 -10.11483 -9.82447 -9.77277 -9.46997 -9.11140 -8.99281 -8.87598 -6.96868 -5.79070 -3.07985 2.09895 2.64293 3.19053 3.41714 3.47136 3.49629 4.32393 4.35891 4.57547 4.59744 4.75684 4.94694 4.98827 5.01755 5.13699 5.19599 5.25901 5.28827 5.38840 5.46153 5.50931 5.53441 5.60054 5.67893 5.82611 5.85443 5.90638 5.94613 6.02798 6.08748 6.26449 6.30996 6.35605 6.37237 6.48535 6.59023 6.70365 6.82477 7.11133 7.50392 7.68734 8.23035 8.39503 9.50532 10.09013 10.43119 11.43376 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045866 B = 0.002401 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.326942 B =11658.451403 C =11798.615385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.714 5.714 10 C 0.165 3.835 11 C -0.160 4.160 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.728 5.728 15 C 0.508 3.492 16 O -0.541 6.541 17 C -0.133 4.133 18 C -0.055 4.055 19 H 0.091 0.909 20 C -0.139 4.139 21 C -0.184 4.184 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.142 4.142 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.362 -24.081 8.598 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.352 5.352 10 C 0.053 3.947 11 C -0.201 4.201 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.379 5.379 15 C 0.294 3.706 16 O -0.418 6.418 17 C -0.173 4.173 18 C -0.073 4.073 19 H 0.109 0.891 20 C -0.157 4.157 21 C -0.202 4.202 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.182 4.182 25 H 0.065 0.935 26 H 0.219 0.781 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.613 -23.982 8.445 25.841 hybrid contribution 0.541 1.005 0.004 1.141 sum 5.154 -22.978 8.450 25.019 Atomic orbital electron populations 1.69672 1.05134 1.25637 1.57551 1.24783 0.95538 0.97819 1.02896 0.86116 0.78769 0.84092 0.77196 1.20538 1.21847 1.21856 1.19344 0.91089 0.84233 1.42759 0.91049 1.42426 1.05775 0.99902 1.87049 1.21524 0.95221 0.85065 0.92863 1.23989 1.01250 0.94823 1.00086 1.22686 0.98437 0.94499 0.99025 1.21414 0.95001 0.91830 0.90900 1.46108 1.12833 1.36322 1.42620 1.20692 0.87801 0.80519 0.81582 1.90706 1.15315 1.69516 1.66304 1.21725 0.99399 0.97830 0.98372 1.20824 0.97623 0.94804 0.94059 0.89113 1.23303 0.98947 0.94105 0.99374 1.23241 1.02677 0.97882 0.96393 1.21329 0.99935 0.97387 0.94952 1.22563 0.99888 0.95096 0.98480 1.23422 1.00904 0.97084 0.96748 0.93492 0.78070 0.90774 0.92797 0.90371 0.89429 0.91320 0.91915 0.76679 0.88884 0.88733 0.85796 0.86123 0.91418 0.90899 0.90904 0.90806 0.90111 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.81 5.41 -52.64 -0.28 -18.10 16 10 C 0.17 3.18 4.47 -67.12 -0.30 2.88 16 11 C -0.16 -2.63 7.45 -25.77 -0.19 -2.82 16 12 C -0.13 -1.68 3.76 -89.67 -0.34 -2.02 16 13 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 14 N -0.73 -7.93 5.56 -60.29 -0.33 -8.27 16 15 C 0.51 6.05 7.63 -10.99 -0.08 5.96 16 16 O -0.54 -8.62 14.92 5.56 0.08 -8.54 16 17 C -0.13 -1.09 5.09 -27.88 -0.14 -1.24 16 18 C -0.05 -0.50 2.52 -90.72 -0.23 -0.73 16 19 H 0.09 0.98 7.90 -51.93 -0.41 0.57 16 20 C -0.14 -1.39 9.26 -35.70 -0.33 -1.73 16 21 C -0.18 -1.57 10.78 -35.70 -0.38 -1.96 16 22 C -0.10 -0.70 6.81 -26.83 -0.18 -0.89 16 23 C -0.12 -0.85 6.71 -25.02 -0.17 -1.01 16 24 C -0.14 -2.25 7.39 -25.92 -0.19 -2.44 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 26 H 0.39 10.27 7.91 -40.82 -0.32 9.94 16 27 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.43 7.90 -51.93 -0.41 1.02 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.30 8.47 -40.82 -0.35 2.95 16 34 H 0.09 0.62 8.13 -51.93 -0.42 0.19 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.12 1.41 7.58 -52.48 -0.40 1.01 16 37 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.43 7.91 -51.93 -0.41 0.02 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -32.15 351.83 -9.66 -41.81 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -7.32 Total: 9.67 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -2.81 Total: -11.66 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.10 Total: -53.87 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.54 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.15 -9.66 -41.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689388074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.620 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds