Wall clock time and date at job start Tue Mar 31 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99763 * 2 1 4 4 H 1.48503 * 109.46726 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47021 * 299.99864 * 3 2 1 6 6 H 1.48502 * 109.47101 * 59.99957 * 3 2 1 7 7 C 1.38812 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99770 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99791 * 179.97438 * 9 7 2 11 11 C 1.53786 * 113.61643 * 105.85866 * 10 9 7 12 12 C 1.54049 * 86.98426 * 140.01639 * 11 10 9 13 13 C 1.53002 * 113.62024 * 220.02020 * 12 11 10 14 14 N 1.46500 * 109.47425 * 272.50011 * 13 12 11 15 15 C 1.34772 * 120.00059 * 180.02562 * 14 13 12 16 16 O 1.21283 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.50697 * 120.00066 * 180.02562 * 15 14 13 18 18 C 1.53002 * 109.47431 * 179.97438 * 17 15 14 19 19 H 1.08994 * 110.34068 * 307.28400 * 18 17 15 20 20 C 1.51095 * 110.38716 * 69.69344 * 18 17 15 21 21 C 1.30530 * 111.10291 * 135.24601 * 20 18 17 22 22 C 1.51102 * 111.10280 * 0.02562 * 21 20 18 23 23 C 1.54632 * 104.72559 * 343.55511 * 22 21 20 24 24 C 1.53781 * 113.61305 * 203.46713 * 10 9 7 25 25 H 0.96996 * 120.00281 * 0.02562 * 1 2 3 26 26 H 0.96995 * 120.00062 * 359.97438 * 9 7 2 27 27 H 1.09002 * 112.84935 * 334.66194 * 10 9 7 28 28 H 1.08992 * 113.61675 * 254.61383 * 11 10 9 29 29 H 1.09000 * 113.60973 * 25.51671 * 11 10 9 30 30 H 1.09003 * 113.61268 * 89.11946 * 12 11 10 31 31 H 1.08997 * 109.47064 * 32.50151 * 13 12 11 32 32 H 1.09006 * 109.47182 * 152.49563 * 13 12 11 33 33 H 0.96996 * 119.99355 * 359.97438 * 14 13 12 34 34 H 1.09005 * 109.47018 * 300.00068 * 17 15 14 35 35 H 1.09006 * 109.47329 * 59.99263 * 17 15 14 36 36 H 1.08003 * 124.44676 * 315.22900 * 20 18 17 37 37 H 1.07997 * 124.44576 * 180.02562 * 21 20 18 38 38 H 1.09008 * 110.38131 * 224.74960 * 22 21 20 39 39 H 1.08998 * 110.48292 * 102.42352 * 22 21 20 40 40 H 1.08997 * 111.03758 * 266.60362 * 23 22 21 41 41 H 1.09001 * 111.06995 * 142.68408 * 23 22 21 42 42 H 1.08999 * 113.61567 * 334.48111 * 24 10 9 43 43 H 1.08998 * 113.61196 * 105.38466 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6568 0.0005 11 6 2.0328 -4.3828 1.3560 12 6 1.8625 -5.6908 0.5602 13 6 0.8750 -6.6712 1.1963 14 7 1.5802 -7.5166 2.1628 15 6 0.9070 -8.4609 2.8494 16 8 -0.2827 -8.6106 2.6675 17 6 1.6323 -9.3301 3.8441 18 6 0.6448 -10.3106 4.4801 19 1 -0.2151 -9.7750 4.8822 20 6 0.2002 -11.3407 3.4680 21 6 0.2129 -12.5405 3.9819 22 6 0.6675 -12.5105 5.4226 23 6 1.3386 -11.1280 5.5943 24 6 1.2469 -4.8365 -0.5606 25 1 -0.4850 0.8400 -0.0004 26 1 0.3557 -2.3881 0.0005 27 1 3.0560 -3.5693 -0.4293 28 1 2.9742 -4.3216 1.9018 29 1 1.1688 -4.1300 1.9705 30 1 2.8068 -6.1596 0.2833 31 1 0.0882 -6.1151 1.7060 32 1 0.4334 -7.2968 0.4205 33 1 2.5317 -7.3971 2.3080 34 1 2.4196 -9.8859 3.3348 35 1 2.0731 -8.7043 4.6201 36 1 -0.0903 -11.1139 2.4528 37 1 -0.0651 -13.4369 3.4475 38 1 1.3868 -13.3077 5.6104 39 1 -0.1861 -12.6043 6.0939 40 1 2.4131 -11.1906 5.4220 41 1 1.1260 -10.7086 6.5776 42 1 0.1684 -4.7076 -0.4690 43 1 1.5543 -5.1413 -1.5609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689388074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:52 Heat of formation + Delta-G solvation = -23.681515 kcal Electronic energy + Delta-G solvation = -20732.216754 eV Core-core repulsion = 17583.978689 eV Total energy + Delta-G solvation = -3148.238066 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06725 -39.98824 -39.01610 -36.01253 -34.96809 -32.69034 -32.03867 -29.79624 -28.82689 -26.46317 -26.34207 -25.42313 -22.46205 -21.70761 -21.23733 -20.46436 -19.58614 -19.04159 -17.95068 -17.29399 -16.84859 -16.58256 -16.37205 -16.19744 -15.66516 -15.40228 -15.03862 -14.63331 -14.47852 -13.67482 -13.37852 -13.24322 -13.04627 -12.91823 -12.90738 -12.75233 -12.66231 -12.64277 -12.16658 -12.07178 -12.06039 -11.98453 -11.69982 -11.57245 -11.54844 -11.08969 -10.85252 -10.68436 -10.01923 -9.77919 -8.98081 -7.94925 -5.23445 1.39882 1.47125 1.47976 1.58070 1.72452 2.28682 2.56523 3.37082 3.63442 3.72673 3.75217 3.76080 3.90287 4.00410 4.08897 4.25618 4.34867 4.38343 4.42919 4.55438 4.56935 4.60011 4.69082 4.78530 4.79967 4.96918 4.98290 5.00032 5.02210 5.06213 5.12515 5.22732 5.30994 5.37686 5.43611 5.47795 5.54533 5.69800 5.74365 6.00598 6.27542 6.64924 7.32701 7.34892 8.11161 8.32744 9.28877 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045866 B = 0.002401 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.326942 B =11658.451403 C =11798.615385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.083 4.083 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.240 4.240 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.143 3.857 11 C -0.152 4.152 12 C -0.094 4.094 13 C 0.138 3.862 14 N -0.717 5.717 15 C 0.502 3.498 16 O -0.589 6.589 17 C -0.124 4.124 18 C -0.057 4.057 19 H 0.064 0.936 20 C -0.167 4.167 21 C -0.174 4.174 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.138 4.138 25 H 0.250 0.750 26 H 0.371 0.629 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.416 0.584 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.263 -25.806 9.463 28.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.223 1.223 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.369 5.369 10 C 0.033 3.967 11 C -0.193 4.193 12 C -0.113 4.113 13 C 0.014 3.986 14 N -0.369 5.369 15 C 0.291 3.709 16 O -0.469 6.469 17 C -0.163 4.163 18 C -0.076 4.076 19 H 0.082 0.918 20 C -0.185 4.185 21 C -0.192 4.192 22 C -0.138 4.138 23 C -0.153 4.153 24 C -0.177 4.177 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.599 -25.757 9.319 28.426 hybrid contribution -0.373 1.426 -0.281 1.501 sum 7.226 -24.331 9.038 26.943 Atomic orbital electron populations 1.69837 1.06756 1.25930 1.59893 1.25628 0.96400 1.01342 1.04054 0.85056 0.78380 0.79744 0.76492 1.18658 1.22224 1.22296 1.19776 0.91636 0.85323 1.40426 0.90177 1.42661 1.05351 1.01310 1.87549 1.21972 0.95590 0.83825 0.95281 1.23756 1.01020 0.96006 0.98517 1.22514 0.99425 0.93012 0.96345 1.21155 0.94564 0.91789 0.91091 1.45981 1.13572 1.35552 1.41828 1.21432 0.87396 0.80464 0.81644 1.90692 1.17618 1.70825 1.67780 1.21762 0.99175 0.97419 0.97963 1.20821 0.97296 0.94880 0.94583 0.91760 1.23257 1.01046 0.95247 0.98941 1.23521 1.00833 0.97615 0.97263 1.21403 1.00522 0.98225 0.93680 1.22571 1.00570 0.94244 0.97914 1.23316 0.99698 0.96069 0.98643 0.94139 0.79733 0.90072 0.91181 0.92848 0.85902 0.94031 0.92150 0.74678 0.86470 0.86281 0.88090 0.85294 0.89673 0.90645 0.89155 0.89869 0.91721 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 2 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.27 9.97 84.03 0.84 -12.44 16 8 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 9 N -0.73 -36.99 5.41 -320.44 -1.73 -38.73 16 10 C 0.14 5.36 4.47 45.52 0.20 5.56 16 11 C -0.15 -4.79 7.45 31.21 0.23 -4.56 16 12 C -0.09 -2.26 3.76 -10.18 -0.04 -2.30 16 13 C 0.14 3.49 5.51 86.38 0.48 3.97 16 14 N -0.72 -14.26 5.56 -463.06 -2.57 -16.83 16 15 C 0.50 11.51 7.63 87.66 0.67 12.18 16 16 O -0.59 -19.28 14.92 -3.04 -0.05 -19.32 16 17 C -0.12 -1.75 5.09 29.85 0.15 -1.60 16 18 C -0.06 -0.98 2.52 -10.86 -0.03 -1.01 16 19 H 0.06 1.42 7.90 -2.39 -0.02 1.40 16 20 C -0.17 -3.31 9.26 26.26 0.24 -3.06 16 21 C -0.17 -2.77 10.78 26.26 0.28 -2.49 16 22 C -0.10 -1.20 6.81 30.53 0.21 -1.00 16 23 C -0.12 -1.28 6.71 31.70 0.21 -1.07 16 24 C -0.14 -4.23 7.39 31.12 0.23 -4.00 16 25 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.37 20.50 7.91 -92.71 -0.73 19.77 16 27 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.96 7.90 -2.39 -0.02 1.95 16 30 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.04 1.29 7.85 -2.39 -0.02 1.27 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.42 5.44 8.47 -92.71 -0.79 4.65 16 34 H 0.12 1.14 8.13 -2.38 -0.02 1.12 16 35 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.10 2.42 7.58 -2.91 -0.02 2.40 16 37 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.09 0.71 7.91 -2.39 -0.02 0.69 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.21 8.07 -2.39 -0.02 2.19 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.28 351.83 1.58 -70.70 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.53 Total: 32.31 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 4.15 Total: -16.12 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.02 Total: -115.86 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -72.28 1.58 -70.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689388074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.016 kcal (2) G-P(sol) polarization free energy of solvation -72.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds