Wall clock time and date at job start Tue Mar 31 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47027 * 240.00155 * 3 2 1 5 5 H 1.48498 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46900 * 120.00505 * 3 2 1 7 7 C 1.38812 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00594 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99300 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99458 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61234 * 205.00061 * 10 9 7 12 12 C 1.53782 * 87.08471 * 219.93633 * 11 10 9 13 13 C 1.52997 * 113.61871 * 139.98088 * 12 11 10 14 14 N 1.46505 * 109.47212 * 176.53036 * 13 12 11 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00597 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99622 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47212 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.34652 * 52.71298 * 18 17 15 20 20 C 1.51109 * 110.38833 * 290.30299 * 18 17 15 21 21 C 1.30524 * 111.10567 * 224.74905 * 20 18 17 22 22 C 1.51098 * 111.10661 * 0.02562 * 21 20 18 23 23 C 1.54639 * 110.39003 * 174.99988 * 18 17 15 24 24 C 1.53785 * 87.16968 * 25.38967 * 12 11 10 25 25 H 0.97001 * 120.00243 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00108 * 0.02562 * 9 7 2 27 27 H 1.09005 * 112.85131 * 336.19816 * 10 9 7 28 28 H 1.09011 * 113.61618 * 105.38985 * 11 10 9 29 29 H 1.09000 * 113.69499 * 334.49383 * 11 10 9 30 30 H 1.09001 * 113.61319 * 270.80387 * 12 11 10 31 31 H 1.09002 * 109.47153 * 56.53028 * 13 12 11 32 32 H 1.09001 * 109.46832 * 296.53219 * 13 12 11 33 33 H 0.96996 * 119.99606 * 0.02562 * 14 13 12 34 34 H 1.09001 * 109.47380 * 300.00190 * 17 15 14 35 35 H 1.09002 * 109.47060 * 60.00278 * 17 15 14 36 36 H 1.08006 * 124.44285 * 44.75135 * 20 18 17 37 37 H 1.07999 * 124.44283 * 179.97438 * 21 20 18 38 38 H 1.08996 * 110.38797 * 257.62351 * 22 21 20 39 39 H 1.09001 * 110.48556 * 135.29311 * 22 21 20 40 40 H 1.08990 * 111.03971 * 261.47779 * 23 18 17 41 41 H 1.09001 * 111.03270 * 25.41953 * 23 18 17 42 42 H 1.09000 * 113.61195 * 89.16170 * 24 12 11 43 43 H 1.09001 * 113.61520 * 220.06304 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2603 -4.8287 -0.5960 12 6 1.8498 -5.6981 0.5271 13 6 0.8480 -6.6867 1.1270 14 7 1.5226 -7.5208 2.1247 15 6 0.8321 -8.4691 2.7883 16 8 -0.3476 -8.6323 2.5591 17 6 1.5262 -9.3274 3.8142 18 6 0.5244 -10.3160 4.4141 19 1 0.0172 -10.8685 3.6231 20 6 -0.4793 -9.5889 5.2786 21 6 -0.6715 -10.2180 6.4060 22 6 0.1723 -11.4691 6.4817 23 6 1.2404 -11.2905 5.3780 24 6 2.0030 -4.4043 1.3442 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 3.0657 -3.5637 -0.4059 28 1 1.5909 -5.1202 -1.5930 29 1 0.1797 -4.7021 -0.5286 30 1 2.7997 -6.1643 0.2655 31 1 0.4448 -7.3200 0.3367 32 1 0.0354 -6.1372 1.6022 33 1 2.4660 -7.3900 2.3082 34 1 2.3383 -9.8773 3.3385 35 1 1.9301 -8.6944 4.6043 36 1 -0.9728 -8.6695 5.0001 37 1 -1.3447 -9.8871 7.1830 38 1 -0.4366 -12.3505 6.2809 39 1 0.6465 -11.5508 7.4598 40 1 1.4573 -12.2386 4.8860 41 1 2.1491 -10.8441 5.7819 42 1 1.1262 -4.1602 1.9439 43 1 2.9325 -4.3536 1.9114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689388075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:55 Heat of formation + Delta-G solvation = -3.234777 kcal Electronic energy + Delta-G solvation = -20772.875278 eV Core-core repulsion = 17625.523850 eV Total energy + Delta-G solvation = -3147.351429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.13938 -38.83555 -38.08008 -34.63782 -33.28606 -31.85262 -30.23728 -29.16392 -27.62444 -25.29536 -25.07560 -23.73550 -21.09730 -20.86885 -20.45078 -19.10484 -18.80933 -17.15935 -16.93842 -16.26400 -16.06773 -15.57868 -15.03532 -14.74381 -14.69179 -13.84985 -13.66877 -13.46989 -12.98604 -12.70926 -12.29452 -12.08443 -12.07239 -11.89066 -11.81066 -11.51469 -11.39326 -11.35949 -11.23368 -10.99574 -10.82913 -10.53285 -10.23901 -10.16609 -9.83092 -9.76358 -9.46830 -9.08326 -8.98955 -8.86668 -6.97001 -5.78655 -3.07675 2.13344 2.64503 3.19337 3.42643 3.47013 3.48287 4.33278 4.37025 4.57780 4.60642 4.76589 4.96636 4.98950 5.01352 5.14467 5.22081 5.26665 5.29885 5.39040 5.46261 5.51642 5.54263 5.61456 5.68258 5.83114 5.85577 5.92336 5.95276 6.03194 6.08890 6.27000 6.31720 6.35943 6.40597 6.48902 6.59075 6.73446 6.82854 7.11001 7.50712 7.67828 8.23284 8.39906 9.50767 10.09211 10.43358 11.43653 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032978 B = 0.002533 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.853393 B =11052.138314 C =11364.161687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.727 5.727 15 C 0.508 3.492 16 O -0.541 6.541 17 C -0.133 4.133 18 C -0.054 4.054 19 H 0.090 0.910 20 C -0.140 4.140 21 C -0.184 4.184 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.161 4.161 25 H 0.256 0.744 26 H 0.385 0.615 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -23.178 9.454 25.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.379 5.379 15 C 0.294 3.706 16 O -0.418 6.418 17 C -0.173 4.173 18 C -0.072 4.072 19 H 0.108 0.892 20 C -0.158 4.158 21 C -0.202 4.202 22 C -0.136 4.136 23 C -0.160 4.160 24 C -0.202 4.202 25 H 0.066 0.934 26 H 0.219 0.781 27 H 0.093 0.907 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.233 0.767 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.049 -23.091 9.254 25.204 hybrid contribution 0.534 1.091 0.124 1.221 sum 4.583 -22.000 9.378 24.351 Atomic orbital electron populations 1.69649 1.05145 1.25885 1.57350 1.24776 0.95527 0.97803 1.02821 0.86263 0.78534 0.83504 0.77845 1.21224 1.21673 1.21249 1.19258 0.91028 0.84260 1.43081 0.91154 1.42407 1.05767 0.99883 1.86991 1.21547 0.95283 0.85038 0.92752 1.23443 1.01021 0.97043 0.96712 1.22635 0.98384 0.94430 0.99184 1.21412 0.95388 0.91997 0.90353 1.46104 1.13796 1.36430 1.41543 1.20692 0.87454 0.80586 0.81858 1.90705 1.15831 1.69329 1.65980 1.21728 0.99395 0.98143 0.98077 1.20824 0.94192 0.94743 0.97478 0.89199 1.23319 0.98244 0.99542 0.94690 1.23240 1.01311 0.97131 0.98483 1.21326 0.96304 0.96922 0.99041 1.22566 0.98111 0.99196 0.96153 1.23970 1.01285 0.95018 0.99939 0.93378 0.78063 0.90712 0.92029 0.90135 0.89447 0.91912 0.91352 0.76675 0.88855 0.88767 0.85709 0.86074 0.90957 0.91384 0.90880 0.90885 0.90408 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.31 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.78 9.97 -15.06 -0.15 -6.93 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.81 5.41 -52.55 -0.28 -18.10 16 10 C 0.17 3.20 4.48 -67.03 -0.30 2.90 16 11 C -0.14 -2.27 7.39 -25.92 -0.19 -2.46 16 12 C -0.13 -1.68 3.75 -89.81 -0.34 -2.02 16 13 C 0.13 1.73 5.50 -4.04 -0.02 1.70 16 14 N -0.73 -7.96 5.56 -60.29 -0.33 -8.29 16 15 C 0.51 6.06 7.63 -10.99 -0.08 5.98 16 16 O -0.54 -8.63 14.92 5.56 0.08 -8.55 16 17 C -0.13 -1.10 5.09 -27.88 -0.14 -1.24 16 18 C -0.05 -0.49 2.52 -90.71 -0.23 -0.72 16 19 H 0.09 0.95 7.90 -51.93 -0.41 0.54 16 20 C -0.14 -1.48 9.26 -35.69 -0.33 -1.81 16 21 C -0.18 -1.67 10.77 -35.70 -0.38 -2.05 16 22 C -0.10 -0.73 6.81 -26.83 -0.18 -0.91 16 23 C -0.12 -0.85 6.71 -25.01 -0.17 -1.01 16 24 C -0.16 -2.64 7.45 -25.82 -0.19 -2.83 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.39 10.28 7.93 -40.82 -0.32 9.96 16 27 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.04 7.87 -51.93 -0.41 0.63 16 33 H 0.40 3.32 8.47 -40.82 -0.35 2.98 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.68 8.13 -51.93 -0.42 0.26 16 36 H 0.13 1.53 7.59 -52.48 -0.40 1.13 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 42 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 351.88 15.07 5.30 5.30 Total: -1.00 -32.11 351.88 -9.66 -41.77 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.32 Total: 9.98 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -2.81 Total: -11.88 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.11 Total: -53.92 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.11 -9.66 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689388075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.534 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds