Wall clock time and date at job start Tue Mar 31 2020 00:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86807 * 119.99766 * 2 1 4 4 H 1.48506 * 109.47027 * 240.00155 * 3 2 1 5 5 H 1.48498 * 109.47049 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46900 * 120.00505 * 3 2 1 7 7 C 1.38812 * 120.00488 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00594 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99300 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99458 * 180.02562 * 9 7 2 11 11 C 1.53777 * 113.61234 * 205.00061 * 10 9 7 12 12 C 1.53782 * 87.08471 * 219.93633 * 11 10 9 13 13 C 1.52997 * 113.61871 * 139.98088 * 12 11 10 14 14 N 1.46505 * 109.47212 * 176.53036 * 13 12 11 15 15 C 1.34771 * 119.99622 * 179.97438 * 14 13 12 16 16 O 1.21280 * 120.00597 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99622 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47212 * 180.02562 * 17 15 14 19 19 H 1.09003 * 110.34652 * 52.71298 * 18 17 15 20 20 C 1.51109 * 110.38833 * 290.30299 * 18 17 15 21 21 C 1.30524 * 111.10567 * 224.74905 * 20 18 17 22 22 C 1.51098 * 111.10661 * 0.02562 * 21 20 18 23 23 C 1.54639 * 110.39003 * 174.99988 * 18 17 15 24 24 C 1.53785 * 87.16968 * 25.38967 * 12 11 10 25 25 H 0.97001 * 120.00243 * 359.97438 * 1 2 3 26 26 H 0.96995 * 120.00108 * 0.02562 * 9 7 2 27 27 H 1.09005 * 112.85131 * 336.19816 * 10 9 7 28 28 H 1.09011 * 113.61618 * 105.38985 * 11 10 9 29 29 H 1.09000 * 113.69499 * 334.49383 * 11 10 9 30 30 H 1.09001 * 113.61319 * 270.80387 * 12 11 10 31 31 H 1.09002 * 109.47153 * 56.53028 * 13 12 11 32 32 H 1.09001 * 109.46832 * 296.53219 * 13 12 11 33 33 H 0.96996 * 119.99606 * 0.02562 * 14 13 12 34 34 H 1.09001 * 109.47380 * 300.00190 * 17 15 14 35 35 H 1.09002 * 109.47060 * 60.00278 * 17 15 14 36 36 H 1.08006 * 124.44285 * 44.75135 * 20 18 17 37 37 H 1.07999 * 124.44283 * 179.97438 * 21 20 18 38 38 H 1.08996 * 110.38797 * 257.62351 * 22 21 20 39 39 H 1.09001 * 110.48556 * 135.29311 * 22 21 20 40 40 H 1.08990 * 111.03971 * 261.47779 * 23 18 17 41 41 H 1.09001 * 111.03270 * 25.41953 * 23 18 17 42 42 H 1.09000 * 113.61195 * 89.16170 * 24 12 11 43 43 H 1.09001 * 113.61520 * 220.06304 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2603 -4.8287 -0.5960 12 6 1.8498 -5.6981 0.5271 13 6 0.8480 -6.6867 1.1270 14 7 1.5226 -7.5208 2.1247 15 6 0.8321 -8.4691 2.7883 16 8 -0.3476 -8.6323 2.5591 17 6 1.5262 -9.3274 3.8142 18 6 0.5244 -10.3160 4.4141 19 1 0.0172 -10.8685 3.6231 20 6 -0.4793 -9.5889 5.2786 21 6 -0.6715 -10.2180 6.4060 22 6 0.1723 -11.4691 6.4817 23 6 1.2404 -11.2905 5.3780 24 6 2.0030 -4.4043 1.3442 25 1 -0.4850 0.8400 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 3.0657 -3.5637 -0.4059 28 1 1.5909 -5.1202 -1.5930 29 1 0.1797 -4.7021 -0.5286 30 1 2.7997 -6.1643 0.2655 31 1 0.4448 -7.3200 0.3367 32 1 0.0354 -6.1372 1.6022 33 1 2.4660 -7.3900 2.3082 34 1 2.3383 -9.8773 3.3385 35 1 1.9301 -8.6944 4.6043 36 1 -0.9728 -8.6695 5.0001 37 1 -1.3447 -9.8871 7.1830 38 1 -0.4366 -12.3505 6.2809 39 1 0.6465 -11.5508 7.4598 40 1 1.4573 -12.2386 4.8860 41 1 2.1491 -10.8441 5.7819 42 1 1.1262 -4.1602 1.9439 43 1 2.9325 -4.3536 1.9114 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689388075.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:55 Heat of formation + Delta-G solvation = -23.737252 kcal Electronic energy + Delta-G solvation = -20773.764332 eV Core-core repulsion = 17625.523850 eV Total energy + Delta-G solvation = -3148.240483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.06878 -39.99054 -39.01797 -36.01198 -34.96722 -32.69291 -32.04268 -29.79961 -28.82669 -26.46464 -26.34114 -25.42200 -22.46263 -21.70133 -21.23479 -20.46578 -19.60733 -19.04246 -17.93005 -17.28578 -16.86042 -16.59154 -16.51922 -15.97040 -15.73550 -15.41641 -15.06923 -14.62765 -14.43853 -13.65707 -13.40444 -13.24576 -13.02066 -12.92840 -12.89064 -12.75963 -12.66352 -12.61138 -12.24806 -12.08666 -12.06612 -11.98867 -11.69398 -11.57348 -11.54385 -11.09119 -10.83639 -10.68263 -10.01960 -9.78852 -8.98293 -7.94690 -5.23361 1.38508 1.46859 1.50125 1.56230 1.72463 2.28780 2.56733 3.36918 3.63108 3.73437 3.74967 3.76490 3.90083 4.00801 4.08459 4.25568 4.35183 4.37804 4.42930 4.54167 4.57865 4.61302 4.68829 4.77117 4.80360 4.96961 4.98175 4.99528 5.02068 5.06487 5.12538 5.22347 5.30881 5.37691 5.43978 5.47751 5.54179 5.69729 5.73994 5.98401 6.27383 6.64975 7.32630 7.34948 8.11151 8.32843 9.28728 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032978 B = 0.002533 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.853393 B =11052.138314 C =11364.161687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.143 3.857 11 C -0.138 4.138 12 C -0.094 4.094 13 C 0.138 3.862 14 N -0.717 5.717 15 C 0.502 3.498 16 O -0.589 6.589 17 C -0.124 4.124 18 C -0.055 4.055 19 H 0.069 0.931 20 C -0.170 4.170 21 C -0.176 4.176 22 C -0.101 4.101 23 C -0.114 4.114 24 C -0.153 4.153 25 H 0.250 0.750 26 H 0.371 0.629 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.040 0.960 33 H 0.416 0.584 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.052 0.948 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.791 -25.109 10.172 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.803 3.197 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.375 4.375 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.034 3.966 11 C -0.178 4.178 12 C -0.113 4.113 13 C 0.014 3.986 14 N -0.369 5.369 15 C 0.290 3.710 16 O -0.469 6.469 17 C -0.163 4.163 18 C -0.074 4.074 19 H 0.088 0.912 20 C -0.188 4.188 21 C -0.194 4.194 22 C -0.138 4.138 23 C -0.152 4.152 24 C -0.194 4.194 25 H 0.059 0.941 26 H 0.203 0.797 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.253 0.747 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.071 0.929 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.121 -25.071 9.982 27.909 hybrid contribution -0.422 1.616 -0.076 1.672 sum 6.699 -23.455 9.906 26.327 Atomic orbital electron populations 1.69823 1.06773 1.26103 1.59707 1.25627 0.96380 1.01351 1.03937 0.85193 0.77144 0.79041 0.78281 1.20166 1.22471 1.20307 1.19711 0.91628 0.85359 1.40807 0.90206 1.42641 1.05333 1.01298 1.87532 1.21998 0.95638 0.83799 0.95192 1.23330 0.99797 0.96066 0.98582 1.22465 0.99462 0.92948 0.96399 1.21155 0.94826 0.91965 0.90661 1.45978 1.14524 1.35672 1.40760 1.21440 0.86998 0.80545 0.81968 1.90692 1.18096 1.70661 1.67471 1.21767 0.99481 0.97733 0.97361 1.20823 0.94192 0.95105 0.97235 0.91234 1.23287 0.99949 0.99486 0.96097 1.23529 1.00686 0.97411 0.97770 1.21401 0.96335 0.95833 1.00195 1.22573 0.98121 0.99243 0.95216 1.23739 1.00973 0.96164 0.98502 0.94110 0.79745 0.89986 0.90275 0.91778 0.85857 0.92011 0.94189 0.74689 0.85588 0.87131 0.88625 0.85655 0.90427 0.89772 0.89376 0.89307 0.92943 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 2 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 3 Si 0.97 46.26 29.55 68.60 2.03 48.28 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.50 9.97 84.03 0.84 -12.67 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -37.10 5.41 -320.16 -1.73 -38.83 16 10 C 0.14 5.40 4.48 45.58 0.20 5.60 16 11 C -0.14 -4.25 7.39 31.12 0.23 -4.02 16 12 C -0.09 -2.26 3.75 -10.27 -0.04 -2.30 16 13 C 0.14 3.50 5.50 86.38 0.47 3.97 16 14 N -0.72 -14.33 5.56 -463.06 -2.57 -16.90 16 15 C 0.50 11.54 7.63 87.66 0.67 12.21 16 16 O -0.59 -19.31 14.92 -3.03 -0.05 -19.36 16 17 C -0.12 -1.75 5.09 29.85 0.15 -1.60 16 18 C -0.05 -0.94 2.52 -10.85 -0.03 -0.96 16 19 H 0.07 1.45 7.90 -2.39 -0.02 1.44 16 20 C -0.17 -3.64 9.26 26.27 0.24 -3.39 16 21 C -0.18 -3.06 10.77 26.26 0.28 -2.78 16 22 C -0.10 -1.24 6.81 30.53 0.21 -1.03 16 23 C -0.11 -1.23 6.71 31.71 0.21 -1.02 16 24 C -0.15 -4.84 7.45 31.18 0.23 -4.61 16 25 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.37 20.57 7.93 -92.71 -0.73 19.83 16 27 H 0.08 2.97 8.10 -2.38 -0.02 2.95 16 28 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 29 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 30 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.25 7.87 -2.39 -0.02 1.23 16 33 H 0.42 5.50 8.47 -92.71 -0.79 4.71 16 34 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.25 8.13 -2.39 -0.02 1.23 16 36 H 0.10 2.56 7.59 -2.91 -0.02 2.54 16 37 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.70 7.91 -2.39 -0.02 0.69 16 42 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 43 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.53 351.88 1.58 -70.95 By element: Atomic # 1 Polarization: 33.62 SS G_CDS: -0.53 Total: 33.10 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: 4.15 Total: -16.84 kcal Atomic # 7 Polarization: -112.10 SS G_CDS: -4.02 Total: -116.12 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -72.53 1.58 -70.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689388075.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.208 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds