Wall clock time and date at job start Tue Mar 31 2020 00:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 120.00134 * 2 1 4 4 H 1.48498 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47204 * 300.00472 * 3 2 1 6 6 H 1.48508 * 109.46889 * 60.00276 * 3 2 1 7 7 C 1.38811 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.47290 * 125.79079 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.30599 * 178.92205 * 10 9 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 11 10 9 13 13 H 1.09008 * 111.03635 * 277.41090 * 12 11 10 14 14 C 1.52999 * 111.00682 * 153.57509 * 12 11 10 15 15 N 1.46494 * 109.47358 * 181.34650 * 14 12 11 16 16 C 1.34776 * 120.00390 * 179.97438 * 15 14 12 17 17 O 1.21283 * 119.99579 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00535 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47144 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.34693 * 54.29997 * 19 18 16 21 21 C 1.51097 * 110.38522 * 292.01019 * 19 18 16 22 22 C 1.30728 * 110.99049 * 224.84174 * 21 19 18 23 23 C 1.51106 * 111.13700 * 359.84241 * 22 21 19 24 24 C 1.54632 * 104.72482 * 16.53643 * 23 22 21 25 25 C 1.47425 * 125.65179 * 180.02562 * 9 7 2 26 26 H 0.96999 * 120.00175 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.85762 * 59.49821 * 10 9 7 28 28 H 1.08995 * 110.00297 * 298.42768 * 10 9 7 29 29 H 1.09002 * 110.72180 * 219.45147 * 11 10 9 30 30 H 1.08994 * 110.87038 * 96.25177 * 11 10 9 31 31 H 1.08994 * 109.47238 * 301.35169 * 14 12 11 32 32 H 1.09004 * 109.46626 * 61.34724 * 14 12 11 33 33 H 0.97004 * 119.99769 * 0.02562 * 15 14 12 34 34 H 1.09003 * 109.46943 * 300.00720 * 18 16 15 35 35 H 1.08995 * 109.47017 * 60.00018 * 18 16 15 36 36 H 1.07994 * 124.45169 * 44.73347 * 21 19 18 37 37 H 1.07996 * 124.41467 * 179.97438 * 22 21 19 38 38 H 1.09000 * 110.38521 * 257.72400 * 23 22 21 39 39 H 1.09002 * 110.38366 * 135.34736 * 23 22 21 40 40 H 1.09001 * 111.03774 * 217.33284 * 24 23 22 41 41 H 1.09002 * 111.03848 * 93.39858 * 24 23 22 42 42 H 1.09002 * 110.36696 * 85.26297 * 25 9 7 43 43 H 1.08995 * 110.36608 * 323.05133 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1397 -2.5367 -0.0005 11 6 -0.4478 -4.0487 -0.0283 12 6 0.8538 -4.6579 -0.6131 13 1 0.8592 -4.5979 -1.7015 14 6 1.0416 -6.1025 -0.1455 15 7 2.2938 -6.6332 -0.6899 16 6 2.6693 -7.8965 -0.4082 17 8 1.9703 -8.5942 0.2957 18 6 3.9577 -8.4423 -0.9678 19 6 4.1454 -9.8869 -0.5002 20 1 3.2708 -10.4849 -0.7566 21 6 4.3941 -9.9298 0.9895 22 6 5.3783 -10.7409 1.2768 23 6 5.9446 -11.3745 0.0273 24 6 5.4186 -10.4964 -1.1317 25 6 1.9335 -3.7312 -0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5607 -2.0564 -0.8839 28 1 -0.5599 -2.0893 0.9002 29 1 -1.2974 -4.2573 -0.6785 30 1 -0.6320 -4.4259 0.9776 31 1 1.0783 -6.1300 0.9435 32 1 0.2068 -6.7093 -0.4963 33 1 2.8531 -6.0750 -1.2526 34 1 3.9212 -8.4150 -2.0569 35 1 4.7922 -7.8352 -0.6170 36 1 3.8339 -9.3639 1.7190 37 1 5.7378 -10.9343 2.2766 38 1 5.5830 -12.3975 -0.0770 39 1 7.0342 -11.3567 0.0530 40 1 5.1713 -11.1042 -2.0020 41 1 6.1374 -9.7190 -1.3910 42 1 2.1668 -4.0420 1.0178 43 1 2.8339 -3.7400 -0.6148 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691115597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:57 Heat of formation + Delta-G solvation = -28.687930 kcal Electronic energy + Delta-G solvation = -21280.207266 eV Core-core repulsion = 18131.752106 eV Total energy + Delta-G solvation = -3148.455160 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01058 -39.55017 -38.86041 -35.96889 -34.29736 -32.62713 -31.49788 -29.91658 -29.70577 -27.49096 -26.36444 -24.72749 -22.16182 -21.47612 -21.35418 -20.98209 -19.60016 -18.85743 -17.84058 -17.31321 -16.85155 -16.67714 -16.59278 -15.90965 -15.67169 -15.48819 -14.75975 -14.51345 -14.02580 -13.86321 -13.69313 -13.32323 -13.03928 -12.88360 -12.76222 -12.73785 -12.65340 -12.63888 -12.05571 -11.99401 -11.97745 -11.89444 -11.84837 -11.64462 -11.53361 -11.46413 -10.73663 -10.70935 -10.01152 -9.75344 -8.90317 -7.85590 -5.21080 1.40661 1.46011 1.47008 1.57342 1.74499 2.29976 2.49353 3.33199 3.60971 3.66178 3.76631 3.82893 4.00917 4.02100 4.04303 4.10436 4.39790 4.45307 4.56179 4.61205 4.62864 4.70637 4.72423 4.80823 4.81978 4.92325 5.00850 5.03385 5.06897 5.08399 5.14317 5.32642 5.38372 5.45537 5.46022 5.52332 5.66411 5.72068 5.77288 6.01217 6.19473 6.64275 7.09603 7.34142 7.77350 8.42453 9.25564 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030010 B = 0.002977 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.801823 B = 9402.499691 C = 9986.423403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.090 0.910 14 C 0.145 3.855 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.584 6.584 18 C -0.126 4.126 19 C -0.054 4.054 20 H 0.071 0.929 21 C -0.168 4.168 22 C -0.177 4.177 23 C -0.100 4.100 24 C -0.116 4.116 25 C 0.139 3.861 26 H 0.246 0.754 27 H 0.013 0.987 28 H 0.003 0.997 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.015 0.985 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.657 -21.056 -4.526 24.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.807 3.193 4 H -0.187 1.187 5 H -0.218 1.218 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.114 4.114 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.373 5.373 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.166 4.166 19 C -0.072 4.072 20 H 0.089 0.911 21 C -0.186 4.186 22 C -0.195 4.195 23 C -0.137 4.137 24 C -0.153 4.153 25 C 0.014 3.986 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.021 0.979 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.138 -21.333 -4.036 23.962 hybrid contribution -0.041 1.699 0.325 1.730 sum 10.097 -19.634 -3.711 22.388 Atomic orbital electron populations 1.70199 1.06392 1.25179 1.58519 1.25687 0.96630 1.01166 1.02790 0.84997 0.78288 0.79357 0.76620 1.18725 1.21848 1.22202 1.19523 0.91071 0.83695 1.42598 0.89727 1.44887 1.02465 1.01290 1.86983 1.20954 0.83870 0.91788 0.97637 1.22719 0.97337 0.95012 1.01174 1.22417 0.95851 0.92465 1.00710 0.89128 1.21084 0.86673 0.92257 0.97939 1.46053 1.24284 1.14182 1.52814 1.21338 0.88216 0.81081 0.79868 1.90677 1.56676 1.59223 1.39864 1.21776 0.94217 0.96979 1.03621 1.20809 0.99139 0.94762 0.92523 0.91070 1.23349 0.97886 1.00019 0.97363 1.23579 0.97886 0.98256 0.99795 1.21397 1.01202 0.99275 0.91835 1.22579 0.95497 0.99418 0.97807 1.21730 0.95430 0.84374 0.97083 0.94466 0.96849 0.97901 0.89632 0.91305 0.92877 0.91118 0.75075 0.85931 0.87251 0.88260 0.85562 0.90345 0.89897 0.89431 0.89539 0.96687 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.96 10.33 21.65 0.22 -57.73 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.24 -13.39 10.28 84.03 0.86 -12.53 16 8 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.63 -32.14 3.40 -691.30 -2.35 -34.49 16 10 C 0.18 9.04 5.38 86.68 0.47 9.51 16 11 C -0.12 -4.40 6.42 31.78 0.20 -4.20 16 12 C -0.09 -2.94 3.10 -9.40 -0.03 -2.97 16 13 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 14 C 0.14 3.90 5.12 86.38 0.44 4.34 16 15 N -0.72 -16.26 5.41 -463.08 -2.50 -18.77 16 16 C 0.51 12.12 7.61 87.66 0.67 12.79 16 17 O -0.58 -18.86 14.79 -3.04 -0.04 -18.91 16 18 C -0.13 -1.98 5.10 29.85 0.15 -1.83 16 19 C -0.05 -0.95 2.52 -10.86 -0.03 -0.98 16 20 H 0.07 1.50 7.96 -2.39 -0.02 1.48 16 21 C -0.17 -3.61 9.24 26.05 0.24 -3.36 16 22 C -0.18 -3.10 10.78 26.05 0.28 -2.82 16 23 C -0.10 -1.28 6.81 30.53 0.21 -1.08 16 24 C -0.12 -1.36 6.71 31.71 0.21 -1.15 16 25 C 0.14 5.36 6.40 86.86 0.56 5.91 16 26 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.01 0.73 7.39 -2.38 -0.02 0.72 16 28 H 0.00 0.15 7.51 -2.39 -0.02 0.14 16 29 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 31 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.41 7.45 8.34 -92.71 -0.77 6.68 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 2.61 7.44 -2.91 -0.02 2.59 16 37 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.82 7.91 -2.39 -0.02 0.80 16 42 H 0.02 0.61 8.00 -2.39 -0.02 0.59 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -71.92 343.96 2.26 -69.67 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.20 Total: 14.38 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 4.70 Total: -1.91 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.63 Total: -110.99 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.04 Total: -18.91 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.92 2.26 -69.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691115597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.981 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds