Wall clock time and date at job start Tue Mar 31 2020 00:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86794 * 120.00303 * 2 1 4 4 H 1.48500 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47180 * 299.99846 * 3 2 1 6 6 H 1.48501 * 109.46912 * 60.00064 * 3 2 1 7 7 C 1.38817 * 119.99378 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99248 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00578 * 359.97438 * 7 2 1 10 10 C 1.47024 * 125.64253 * 0.04210 * 9 7 2 11 11 C 1.54329 * 107.26695 * 181.02111 * 10 9 7 12 12 C 1.55161 * 102.94267 * 22.19515 * 11 10 9 13 13 H 1.08999 * 111.03467 * 82.58492 * 12 11 10 14 14 C 1.52998 * 111.00517 * 206.42023 * 12 11 10 15 15 N 1.46503 * 109.47105 * 178.65080 * 14 12 11 16 16 C 1.34774 * 119.99744 * 180.02562 * 15 14 12 17 17 O 1.21282 * 120.00377 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99727 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.46883 * 180.02562 * 18 16 15 20 20 H 1.08996 * 110.43367 * 55.89653 * 19 18 16 21 21 C 1.51104 * 110.38687 * 293.54672 * 19 18 16 22 22 C 1.30527 * 111.10523 * 224.99781 * 21 19 18 23 23 C 1.51104 * 111.10149 * 359.61668 * 22 21 19 24 24 C 1.54635 * 104.67244 * 16.80267 * 23 22 21 25 25 C 1.47414 * 125.65070 * 180.02562 * 9 7 2 26 26 H 0.97001 * 119.99449 * 0.02562 * 1 2 3 27 27 H 1.08992 * 109.88677 * 300.43977 * 10 9 7 28 28 H 1.09003 * 109.88332 * 61.45596 * 10 9 7 29 29 H 1.08997 * 110.72148 * 263.83101 * 11 10 9 30 30 H 1.09004 * 110.71635 * 140.55769 * 11 10 9 31 31 H 1.09001 * 109.46898 * 58.65022 * 14 12 11 32 32 H 1.09000 * 109.47332 * 298.65054 * 14 12 11 33 33 H 0.97001 * 119.99624 * 359.97438 * 15 14 12 34 34 H 1.09001 * 109.47066 * 60.00266 * 18 16 15 35 35 H 1.09000 * 109.47246 * 300.00248 * 18 16 15 36 36 H 1.08002 * 124.44506 * 44.72791 * 21 19 18 37 37 H 1.07991 * 124.44863 * 179.73328 * 22 21 19 38 38 H 1.09003 * 110.57549 * 257.92824 * 23 22 21 39 39 H 1.08997 * 110.34841 * 135.56355 * 23 22 21 40 40 H 1.09000 * 111.04132 * 217.14124 * 24 23 22 41 41 H 1.08999 * 111.07124 * 93.22308 * 24 23 22 42 42 H 1.09004 * 110.37052 * 37.06704 * 25 9 7 43 43 H 1.09003 * 110.46342 * 274.79350 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1376 -2.5327 -0.0009 11 6 -0.4486 -4.0441 0.0255 12 6 0.8516 -4.6563 0.6104 13 1 0.8567 -4.5971 1.6988 14 6 1.0367 -6.1009 0.1418 15 7 2.2878 -6.6344 0.6863 16 6 2.6608 -7.8983 0.4037 17 8 1.9611 -8.5939 -0.3017 18 6 3.9480 -8.4470 0.9634 19 6 4.1336 -9.8913 0.4937 20 1 4.1002 -9.9449 -0.5944 21 6 3.0724 -10.7816 1.0975 22 6 3.5911 -11.8906 1.5501 23 6 5.0833 -11.9288 1.3152 24 6 5.4711 -10.4612 1.0204 25 6 1.9333 -3.7312 -0.0005 26 1 -0.4849 0.8401 -0.0004 27 1 -0.5578 -2.0523 0.8826 28 1 -0.5545 -2.0818 -0.9015 29 1 -0.6316 -4.4178 -0.9819 30 1 -1.2988 -4.2515 0.6754 31 1 1.0738 -6.1276 -0.9473 32 1 0.2007 -6.7064 0.4918 33 1 2.8479 -6.0778 1.2495 34 1 3.9111 -8.4205 2.0524 35 1 4.7838 -7.8412 0.6133 36 1 2.0233 -10.5311 1.1517 37 1 3.0275 -12.6782 2.0278 38 1 5.3205 -12.5631 0.4610 39 1 5.5983 -12.2859 2.2070 40 1 6.2471 -10.4073 0.2568 41 1 5.7840 -9.9483 1.9299 42 1 2.8326 -3.7407 0.6154 43 1 2.1681 -4.0432 -1.0182 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691115598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:00 Heat of formation + Delta-G solvation = -28.257328 kcal Electronic energy + Delta-G solvation = -21252.868977 eV Core-core repulsion = 18104.432489 eV Total energy + Delta-G solvation = -3148.436488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.01618 -39.56312 -38.86800 -35.97360 -34.29600 -32.62860 -31.49708 -29.91920 -29.70829 -27.49016 -26.36198 -24.72916 -22.15755 -21.47216 -21.36038 -20.98700 -19.58429 -18.85760 -17.86044 -17.32568 -16.81373 -16.68523 -16.41643 -16.20476 -15.60357 -15.43504 -14.74947 -14.51160 -14.03386 -13.86410 -13.67561 -13.36065 -13.01917 -12.88484 -12.74463 -12.73072 -12.65456 -12.64007 -12.06087 -11.98702 -11.97356 -11.90611 -11.84997 -11.63067 -11.53298 -11.46590 -10.73034 -10.70380 -10.01005 -9.75785 -8.90069 -7.85223 -5.20836 1.42331 1.46177 1.47255 1.57542 1.74689 2.29886 2.49594 3.33371 3.61550 3.66359 3.77233 3.82412 4.01777 4.02406 4.04060 4.10809 4.40665 4.45172 4.55590 4.60896 4.62725 4.70898 4.73139 4.80830 4.82888 4.92665 5.01287 5.03261 5.06936 5.08119 5.14410 5.32872 5.38612 5.45513 5.46046 5.52371 5.67005 5.72679 5.77856 6.03033 6.20119 6.64393 7.10229 7.34238 7.78079 8.42578 9.25675 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036627 B = 0.002874 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.287850 B = 9740.160036 C =10353.748215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.095 4.095 13 H 0.089 0.911 14 C 0.145 3.855 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.584 6.584 18 C -0.126 4.126 19 C -0.055 4.055 20 H 0.068 0.932 21 C -0.165 4.165 22 C -0.177 4.177 23 C -0.101 4.101 24 C -0.117 4.117 25 C 0.139 3.861 26 H 0.246 0.754 27 H 0.013 0.987 28 H 0.003 0.997 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.413 0.587 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.120 -21.384 5.271 24.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.108 0.892 14 C 0.021 3.979 15 N -0.373 5.373 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.166 4.166 19 C -0.074 4.074 20 H 0.086 0.914 21 C -0.183 4.183 22 C -0.194 4.194 23 C -0.138 4.138 24 C -0.154 4.154 25 C 0.014 3.986 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.021 0.979 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.249 0.751 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.609 -21.655 4.767 24.166 hybrid contribution -0.165 1.611 -0.095 1.622 sum 9.444 -20.044 4.672 22.645 Atomic orbital electron populations 1.70209 1.06397 1.25156 1.58536 1.25696 0.96637 1.01190 1.02800 0.84991 0.78290 0.79342 0.76605 1.18704 1.22211 1.21876 1.19527 0.91091 0.83696 1.42565 0.89701 1.44828 1.02480 1.01324 1.86967 1.20917 0.83919 0.91773 0.97636 1.22725 0.97329 0.95043 1.01149 1.22412 0.95896 0.92498 1.00666 0.89236 1.21084 0.86670 0.92192 0.97994 1.46055 1.24359 1.14140 1.52780 1.21329 0.88309 0.81012 0.79841 1.90676 1.56562 1.59260 1.39902 1.21773 0.94523 0.96876 1.03398 1.20812 0.94238 0.92569 0.99749 0.91378 1.23288 0.98785 0.97051 0.99208 1.23514 0.97444 0.98061 1.00423 1.21397 0.92763 0.97335 1.02260 1.22580 0.95447 0.95244 1.02117 1.21728 0.95406 0.84301 0.97156 0.94484 0.96921 0.97881 0.91273 0.89699 0.92745 0.91246 0.75076 0.86802 0.86405 0.87978 0.85369 0.90489 0.89856 0.89734 0.89442 0.93047 0.96545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 10.31 21.65 0.22 -57.71 16 2 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.24 -13.35 10.28 84.04 0.86 -12.49 16 8 H 0.09 4.47 7.83 -2.91 -0.02 4.45 16 9 N -0.63 -32.05 3.39 -692.03 -2.35 -34.40 16 10 C 0.18 9.05 5.38 86.73 0.47 9.52 16 11 C -0.12 -4.41 6.42 31.79 0.20 -4.20 16 12 C -0.10 -2.95 3.10 -9.41 -0.03 -2.98 16 13 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 14 C 0.15 3.90 5.12 86.38 0.44 4.34 16 15 N -0.72 -16.24 5.41 -463.06 -2.50 -18.75 16 16 C 0.51 12.12 7.59 87.66 0.67 12.78 16 17 O -0.58 -18.81 14.68 -3.03 -0.04 -18.85 16 18 C -0.13 -1.98 5.12 29.85 0.15 -1.83 16 19 C -0.05 -0.98 2.54 -10.85 -0.03 -1.00 16 20 H 0.07 1.48 8.01 -2.39 -0.02 1.46 16 21 C -0.17 -3.40 9.19 26.26 0.24 -3.16 16 22 C -0.18 -2.94 10.77 26.26 0.28 -2.65 16 23 C -0.10 -1.27 6.81 30.53 0.21 -1.06 16 24 C -0.12 -1.40 6.71 31.71 0.21 -1.18 16 25 C 0.14 5.34 6.41 86.85 0.56 5.89 16 26 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 27 H 0.01 0.70 7.38 -2.39 -0.02 0.68 16 28 H 0.00 0.17 7.50 -2.39 -0.02 0.15 16 29 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 30 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.41 7.45 8.34 -92.71 -0.77 6.67 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 2.54 7.31 -2.91 -0.02 2.52 16 37 H 0.13 1.83 8.06 -2.92 -0.02 1.81 16 38 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 0.82 7.91 -2.39 -0.02 0.80 16 42 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.02 0.66 8.00 -2.39 -0.02 0.64 16 Total: -1.00 -71.63 343.67 2.26 -69.37 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.20 Total: 14.23 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 4.71 Total: -1.60 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -4.63 Total: -110.85 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.04 Total: -18.85 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.63 2.26 -69.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691115598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.113 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds