Wall clock time and date at job start Tue Mar 31 2020 00:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00037 * 2 1 4 4 H 1.48501 * 109.47039 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47149 * 299.99760 * 3 2 1 6 6 H 1.48494 * 109.47230 * 60.00196 * 3 2 1 7 7 C 1.38813 * 119.99500 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99152 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64550 * 0.02562 * 9 7 2 11 11 C 1.54331 * 107.26972 * 178.92158 * 10 9 7 12 12 C 1.55155 * 102.94007 * 337.80847 * 11 10 9 13 13 H 1.08996 * 111.00885 * 277.38470 * 12 11 10 14 14 C 1.53009 * 111.00230 * 153.57280 * 12 11 10 15 15 N 1.46497 * 109.47149 * 175.00093 * 14 12 11 16 16 C 1.34774 * 120.00235 * 180.02562 * 15 14 12 17 17 O 1.21287 * 119.99690 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00229 * 180.02562 * 16 15 14 19 19 C 1.52998 * 109.46804 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.35109 * 304.16040 * 19 18 16 21 21 C 1.51101 * 110.39129 * 66.45761 * 19 18 16 22 22 C 1.30517 * 111.11153 * 135.35541 * 21 19 18 23 23 C 1.51106 * 111.10212 * 0.02562 * 22 21 19 24 24 C 1.54633 * 104.72610 * 343.56123 * 23 22 21 25 25 C 1.47421 * 125.64804 * 179.97438 * 9 7 2 26 26 H 0.97001 * 119.99602 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.88136 * 59.51297 * 10 9 7 28 28 H 1.08993 * 110.01938 * 298.41259 * 10 9 7 29 29 H 1.08997 * 110.72097 * 219.44939 * 11 10 9 30 30 H 1.08999 * 110.87084 * 96.24271 * 11 10 9 31 31 H 1.09003 * 109.46599 * 55.00207 * 14 12 11 32 32 H 1.08998 * 109.46818 * 295.00326 * 14 12 11 33 33 H 0.97000 * 119.99734 * 359.97438 * 15 14 12 34 34 H 1.08995 * 109.47038 * 59.99920 * 18 16 15 35 35 H 1.08997 * 109.47192 * 299.99866 * 18 16 15 36 36 H 1.08002 * 124.43921 * 315.38396 * 21 19 18 37 37 H 1.07999 * 124.45152 * 180.02562 * 22 21 19 38 38 H 1.08997 * 110.38952 * 102.37271 * 23 22 21 39 39 H 1.09009 * 110.38734 * 224.74846 * 23 22 21 40 40 H 1.08992 * 111.03606 * 142.66572 * 24 23 22 41 41 H 1.08996 * 111.03698 * 266.60534 * 24 23 22 42 42 H 1.08998 * 110.36702 * 85.30767 * 25 9 7 43 43 H 1.08996 * 110.37086 * 322.98644 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 -0.1375 -2.5327 -0.0005 11 6 -0.4485 -4.0441 -0.0278 12 6 0.8522 -4.6560 -0.6117 13 1 0.8578 -4.5966 -1.7000 14 6 1.0369 -6.1008 -0.1432 15 7 2.2064 -6.6833 -0.8060 16 6 2.5641 -7.9564 -0.5455 17 8 1.9180 -8.6196 0.2379 18 6 3.7674 -8.5554 -1.2268 19 6 3.9519 -10.0002 -0.7585 20 1 4.0282 -10.0396 0.3281 21 6 2.8049 -10.8594 -1.2372 22 6 3.2360 -11.9936 -1.7182 23 6 4.7425 -12.0803 -1.6398 24 6 5.2085 -10.6241 -1.4086 25 6 1.9333 -3.7311 0.0005 26 1 -0.4849 0.8401 0.0004 27 1 -0.5569 -2.0520 -0.8844 28 1 -0.5575 -2.0841 0.8997 29 1 -1.2980 -4.2513 -0.6786 30 1 -0.6342 -4.4206 0.9781 31 1 0.1495 -6.6810 -0.3962 32 1 1.1858 -6.1165 0.9364 33 1 2.7228 -6.1530 -1.4328 34 1 4.6547 -7.9755 -0.9732 35 1 3.6192 -8.5392 -2.3066 36 1 1.7649 -10.5724 -1.1883 37 1 2.5996 -12.7684 -2.1195 38 1 5.0436 -12.7124 -0.8045 39 1 5.1499 -12.4655 -2.5747 40 1 6.0596 -10.5890 -0.7286 41 1 5.4441 -10.1340 -2.3533 42 1 2.1659 -4.0423 1.0190 43 1 2.8331 -3.7404 -0.6146 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691115599.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:03 Heat of formation + Delta-G solvation = -28.302057 kcal Electronic energy + Delta-G solvation = -21229.161942 eV Core-core repulsion = 18080.723515 eV Total energy + Delta-G solvation = -3148.438427 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.01223 -39.55769 -38.87127 -35.97485 -34.30339 -32.63006 -31.49232 -29.93068 -29.71281 -27.48421 -26.35946 -24.71567 -22.13399 -21.54249 -21.36450 -20.96444 -19.58198 -18.85769 -17.85086 -17.35141 -16.81009 -16.68680 -16.37039 -16.22202 -15.60173 -15.42796 -14.74051 -14.50647 -14.04277 -13.86360 -13.67950 -13.37370 -13.02866 -12.88527 -12.74548 -12.73093 -12.65828 -12.63847 -12.06091 -11.98817 -11.97584 -11.88963 -11.85462 -11.62825 -11.54090 -11.46790 -10.73096 -10.70435 -10.00916 -9.75729 -8.90166 -7.85309 -5.20953 1.42363 1.46095 1.47127 1.57440 1.74719 2.30007 2.49481 3.33244 3.61986 3.66335 3.77233 3.80923 4.01648 4.02615 4.04399 4.10957 4.40755 4.45347 4.55613 4.60900 4.62513 4.70961 4.73579 4.81178 4.83573 4.92560 5.01153 5.03165 5.07215 5.07644 5.14417 5.32907 5.37475 5.45625 5.45904 5.53398 5.66948 5.72674 5.77812 6.02972 6.19970 6.64610 7.10212 7.34482 7.77976 8.42473 9.25562 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038220 B = 0.002835 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.433004 B = 9874.916710 C =10448.843272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.085 0.915 9 N -0.630 5.630 10 C 0.183 3.817 11 C -0.124 4.124 12 C -0.094 4.094 13 H 0.090 0.910 14 C 0.145 3.855 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.584 6.584 18 C -0.126 4.126 19 C -0.055 4.055 20 H 0.068 0.932 21 C -0.165 4.165 22 C -0.177 4.177 23 C -0.101 4.101 24 C -0.116 4.116 25 C 0.139 3.861 26 H 0.246 0.754 27 H 0.013 0.987 28 H 0.003 0.997 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.016 0.984 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.464 -21.728 -6.110 24.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.369 4.369 8 H 0.103 0.897 9 N -0.356 5.356 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.114 4.114 13 H 0.109 0.891 14 C 0.020 3.980 15 N -0.373 5.373 16 C 0.295 3.705 17 O -0.464 6.464 18 C -0.165 4.165 19 C -0.074 4.074 20 H 0.086 0.914 21 C -0.183 4.183 22 C -0.195 4.195 23 C -0.138 4.138 24 C -0.154 4.154 25 C 0.014 3.986 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.021 0.979 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.992 -21.976 -5.550 24.385 hybrid contribution -0.155 1.614 0.128 1.627 sum 8.837 -20.362 -5.422 22.850 Atomic orbital electron populations 1.70207 1.06387 1.25163 1.58524 1.25693 0.96639 1.01180 1.02789 0.84992 0.78274 0.79345 0.76621 1.18740 1.21857 1.22187 1.19524 0.91079 0.83712 1.42589 0.89747 1.44829 1.02485 1.01319 1.86969 1.20904 0.83897 0.91771 0.97631 1.22724 0.97314 0.95049 1.01187 1.22407 0.95824 0.92463 1.00696 0.89142 1.21085 0.88566 0.91657 0.96657 1.46054 1.30890 1.13602 1.46764 1.21335 0.86539 0.81118 0.81517 1.90679 1.56334 1.61660 1.37759 1.21764 0.96018 0.96443 1.02316 1.20811 0.93962 0.92668 0.99937 0.91403 1.23285 0.98678 0.96986 0.99395 1.23517 0.97696 0.97821 1.00432 1.21401 0.92283 0.97466 1.02609 1.22573 0.96136 0.95023 1.01629 1.21751 0.95422 0.84333 0.97123 0.94474 0.96903 0.97905 0.89712 0.91273 0.91293 0.92741 0.75039 0.86370 0.86792 0.87999 0.85381 0.90514 0.89824 0.89717 0.89428 0.96574 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.95 10.31 21.65 0.22 -57.72 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.98 45.73 29.55 68.60 2.03 47.76 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.24 -13.40 10.28 84.03 0.86 -12.53 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 9 N -0.63 -32.13 3.39 -692.06 -2.35 -34.48 16 10 C 0.18 9.08 5.37 86.73 0.47 9.54 16 11 C -0.12 -4.42 6.42 31.78 0.20 -4.21 16 12 C -0.09 -2.92 3.05 -9.41 -0.03 -2.95 16 13 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 14 C 0.14 3.89 5.13 86.38 0.44 4.33 16 15 N -0.72 -16.08 5.50 -463.05 -2.55 -18.63 16 16 C 0.51 12.04 7.59 87.66 0.67 12.70 16 17 O -0.58 -18.80 14.68 -3.05 -0.04 -18.84 16 18 C -0.13 -1.95 5.13 29.85 0.15 -1.80 16 19 C -0.06 -0.97 2.54 -10.86 -0.03 -1.00 16 20 H 0.07 1.47 8.01 -2.39 -0.02 1.45 16 21 C -0.17 -3.39 9.19 26.27 0.24 -3.15 16 22 C -0.18 -2.93 10.77 26.27 0.28 -2.65 16 23 C -0.10 -1.26 6.81 30.53 0.21 -1.05 16 24 C -0.12 -1.38 6.71 31.70 0.21 -1.17 16 25 C 0.14 5.36 6.65 86.85 0.58 5.93 16 26 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 28 H 0.00 0.15 7.50 -2.39 -0.02 0.13 16 29 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 33 H 0.41 7.27 8.47 -92.71 -0.79 6.48 16 34 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.10 2.54 7.31 -2.91 -0.02 2.52 16 37 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.81 7.92 -2.39 -0.02 0.79 16 42 H 0.02 0.65 7.91 -2.39 -0.02 0.63 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -71.82 343.87 2.23 -69.60 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.19 Total: 13.88 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.73 Total: -1.56 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.67 Total: -110.83 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.04 Total: -18.84 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.82 2.23 -69.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691115599.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.294 kcal (2) G-P(sol) polarization free energy of solvation -71.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds