Wall clock time and date at job start Tue Mar 31 2020 00:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46961 * 240.00063 * 3 2 1 5 5 H 1.48502 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47214 * 119.99927 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 C 1.52999 * 110.71880 * 206.13651 * 12 11 10 15 15 N 1.46500 * 109.47194 * 179.97438 * 14 12 11 16 16 C 1.34779 * 120.00160 * 179.97438 * 15 14 12 17 17 O 1.21279 * 119.99693 * 359.97438 * 16 15 14 18 18 C 1.50694 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.53009 * 109.46969 * 180.02562 * 18 16 15 20 20 H 1.08993 * 110.34353 * 307.28869 * 19 18 16 21 21 C 1.51103 * 110.38648 * 69.69979 * 19 18 16 22 22 C 1.30525 * 111.10272 * 135.25032 * 21 19 18 23 23 C 1.51102 * 111.10389 * 359.97438 * 22 21 19 24 24 C 1.54631 * 104.72678 * 343.56428 * 23 22 21 25 25 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 26 26 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 28 28 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 29 29 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 30 30 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 31 31 H 1.09002 * 109.47382 * 299.97442 * 14 12 11 32 32 H 1.09000 * 109.47431 * 59.97100 * 14 12 11 33 33 H 0.97001 * 119.99856 * 359.97438 * 15 14 12 34 34 H 1.09006 * 109.47580 * 299.99890 * 18 16 15 35 35 H 1.08999 * 109.47595 * 60.00313 * 18 16 15 36 36 H 1.08001 * 124.44348 * 315.24774 * 21 19 18 37 37 H 1.08001 * 124.44097 * 179.97438 * 22 21 19 38 38 H 1.09000 * 110.38267 * 224.75277 * 23 22 21 39 39 H 1.09000 * 110.48118 * 102.42743 * 23 22 21 40 40 H 1.09001 * 111.03519 * 266.59777 * 24 23 22 41 41 H 1.08999 * 111.03736 * 142.66751 * 24 23 22 42 42 H 1.09001 * 109.88389 * 300.46074 * 25 9 7 43 43 H 1.09003 * 109.87977 * 61.62415 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 6 1.1233 -5.9315 -0.9379 15 7 2.2391 -6.6852 -0.3609 16 6 2.7168 -7.7740 -0.9958 17 8 2.2225 -8.1299 -2.0445 18 6 3.8649 -8.5490 -0.4025 19 6 4.2097 -9.7281 -1.3145 20 1 3.3180 -10.3193 -1.5230 21 6 4.8297 -9.2347 -2.6011 22 6 5.8767 -9.9455 -2.9210 23 6 6.1298 -11.0310 -1.9009 24 6 5.3017 -10.6096 -0.6648 25 6 1.9319 -3.7275 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5272 -2.4867 1.0189 28 1 -0.5992 -1.7590 -0.6152 29 1 -1.3589 -4.3328 -0.2776 30 1 -0.3518 -3.8985 -1.6994 31 1 0.2550 -6.5835 -1.0329 32 1 1.4071 -5.5587 -1.9221 33 1 2.6342 -6.4008 0.4781 34 1 4.7334 -7.8970 -0.3083 35 1 3.5818 -8.9214 0.5820 36 1 4.4557 -8.4032 -3.1799 37 1 6.4825 -9.7794 -3.7996 38 1 7.1896 -11.0768 -1.6502 39 1 5.7872 -11.9951 -2.2768 40 1 5.9073 -10.0319 0.0334 41 1 4.8624 -11.4779 -0.1736 42 1 2.5582 -3.8510 -0.8830 43 1 2.5286 -3.8643 0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691115600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:06 Heat of formation + Delta-G solvation = -7.343363 kcal Electronic energy + Delta-G solvation = -21302.638584 eV Core-core repulsion = 18155.108994 eV Total energy + Delta-G solvation = -3147.529590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.04366 -38.51178 -37.52404 -34.59445 -32.57602 -31.70631 -29.78080 -29.10852 -28.26630 -26.08418 -25.01725 -23.27405 -20.88896 -20.55250 -19.92748 -19.60931 -18.78221 -17.10986 -16.71151 -16.17736 -15.96094 -15.60965 -14.86068 -14.80829 -14.56178 -13.76941 -13.52112 -13.27717 -12.58620 -12.51355 -12.17867 -12.03549 -12.01947 -11.76720 -11.69786 -11.48645 -11.45408 -11.30490 -10.97189 -10.92973 -10.79405 -10.42689 -10.15963 -10.01971 -9.88090 -9.67926 -9.47951 -9.03609 -8.90872 -8.65608 -6.84458 -5.66186 -3.08003 2.17964 2.72902 3.29598 3.39820 3.43904 3.45348 4.39372 4.42455 4.48134 4.67117 4.84842 5.04089 5.11481 5.21766 5.26819 5.32090 5.35306 5.40888 5.45224 5.52236 5.58876 5.66771 5.69861 5.74640 5.89255 5.97949 6.07555 6.08856 6.13623 6.34063 6.43836 6.50688 6.55026 6.58632 6.72829 6.78189 6.90657 7.50478 7.60595 7.61428 7.84879 8.31697 8.35775 9.21296 9.82299 10.47231 11.37758 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.003028 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.491055 B = 9243.664884 C = 9845.072304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.152 3.848 11 C -0.135 4.135 12 C -0.115 4.115 13 H 0.075 0.925 14 C 0.132 3.868 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.544 6.544 18 C -0.134 4.134 19 C -0.053 4.053 20 H 0.090 0.910 21 C -0.139 4.139 22 C -0.185 4.185 23 C -0.099 4.099 24 C -0.123 4.123 25 C 0.142 3.858 26 H 0.253 0.747 27 H 0.012 0.988 28 H 0.107 0.893 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.024 0.976 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.824 -19.973 0.153 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.352 4.352 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.094 0.906 14 C 0.009 3.991 15 N -0.379 5.379 16 C 0.295 3.705 17 O -0.421 6.421 18 C -0.174 4.174 19 C -0.072 4.072 20 H 0.108 0.892 21 C -0.157 4.157 22 C -0.203 4.203 23 C -0.136 4.136 24 C -0.160 4.160 25 C 0.016 3.984 26 H 0.063 0.937 27 H 0.030 0.970 28 H 0.125 0.875 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.235 0.765 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.413 -19.983 -0.596 21.322 hybrid contribution 0.645 1.090 0.457 1.346 sum 8.059 -18.893 -0.139 20.541 Atomic orbital electron populations 1.69786 1.04900 1.24913 1.57543 1.24794 0.95736 0.97740 1.02410 0.86146 0.78405 0.83015 0.77893 1.21144 1.21541 1.21219 1.19031 0.90463 0.82521 1.43214 0.90600 1.44499 1.02000 0.99727 1.86850 1.21936 0.84664 0.92525 0.98176 1.23007 0.95560 0.98603 1.00301 1.22444 0.98285 0.94059 0.98610 0.90631 1.21427 0.88335 0.92160 0.97186 1.46141 1.36306 1.28760 1.26647 1.20669 0.84243 0.80657 0.84888 1.90690 1.60247 1.68325 1.22867 1.21734 0.97579 0.97768 1.00339 1.20822 0.98735 0.94849 0.92789 0.89207 1.23323 0.95674 0.99397 0.97294 1.23234 0.99000 0.97848 1.00184 1.21324 1.00158 0.97930 0.94148 1.22572 0.96804 0.99348 0.97321 1.21317 0.93498 0.85982 0.97631 0.93656 0.97018 0.87545 0.92141 0.91857 0.91811 0.91395 0.76511 0.88720 0.88817 0.85712 0.86115 0.91428 0.90982 0.90848 0.90898 0.95834 0.96466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.26 10.27 -15.06 -0.15 -6.42 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.60 -15.46 3.39 -170.07 -0.58 -16.04 16 10 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 11 C -0.14 -2.52 6.53 -24.58 -0.16 -2.68 16 12 C -0.11 -1.90 3.02 -88.79 -0.27 -2.17 16 13 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 14 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 15 N -0.73 -9.15 5.40 -60.30 -0.33 -9.48 16 16 C 0.51 6.60 7.63 -10.99 -0.08 6.52 16 17 O -0.54 -9.03 14.92 5.56 0.08 -8.95 16 18 C -0.13 -1.24 5.09 -27.88 -0.14 -1.38 16 19 C -0.05 -0.52 2.52 -90.70 -0.23 -0.75 16 20 H 0.09 1.00 7.90 -51.93 -0.41 0.59 16 21 C -0.14 -1.54 9.26 -35.70 -0.33 -1.87 16 22 C -0.18 -1.76 10.77 -35.70 -0.38 -2.14 16 23 C -0.10 -0.77 6.81 -26.83 -0.18 -0.95 16 24 C -0.12 -0.92 6.71 -25.01 -0.17 -1.09 16 25 C 0.14 2.87 6.52 -3.07 -0.02 2.85 16 26 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.12 8.06 -51.93 -0.42 0.71 16 33 H 0.40 4.23 8.33 -40.82 -0.34 3.89 16 34 H 0.09 0.79 8.13 -51.93 -0.42 0.36 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.12 1.59 7.58 -52.49 -0.40 1.19 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.50 7.91 -51.93 -0.41 0.08 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.49 7.77 -51.93 -0.40 0.09 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -31.91 343.26 -9.66 -41.58 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.30 Total: 1.97 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -2.25 Total: -4.92 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.34 Total: -51.90 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.08 Total: -8.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.91 -9.66 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691115600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.236 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds