Wall clock time and date at job start Tue Mar 31 2020 00:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99979 * 2 1 4 4 H 1.48504 * 109.46961 * 240.00063 * 3 2 1 5 5 H 1.48502 * 109.46739 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47214 * 119.99927 * 3 2 1 7 7 C 1.38814 * 119.99950 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99800 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64638 * 359.97290 * 9 7 2 11 11 C 1.54910 * 104.83209 * 155.89300 * 10 9 7 12 12 C 1.55154 * 101.58031 * 37.01037 * 11 10 9 13 13 H 1.08995 * 110.87338 * 82.93395 * 12 11 10 14 14 C 1.52999 * 110.71880 * 206.13651 * 12 11 10 15 15 N 1.46500 * 109.47194 * 179.97438 * 14 12 11 16 16 C 1.34779 * 120.00160 * 179.97438 * 15 14 12 17 17 O 1.21279 * 119.99693 * 359.97438 * 16 15 14 18 18 C 1.50694 * 119.99914 * 179.97438 * 16 15 14 19 19 C 1.53009 * 109.46969 * 180.02562 * 18 16 15 20 20 H 1.08993 * 110.34353 * 307.28869 * 19 18 16 21 21 C 1.51103 * 110.38648 * 69.69979 * 19 18 16 22 22 C 1.30525 * 111.10272 * 135.25032 * 21 19 18 23 23 C 1.51102 * 111.10389 * 359.97438 * 22 21 19 24 24 C 1.54631 * 104.72678 * 343.56428 * 23 22 21 25 25 C 1.47019 * 125.65152 * 179.97438 * 9 7 2 26 26 H 0.96997 * 120.00161 * 0.02562 * 1 2 3 27 27 H 1.08998 * 110.36718 * 274.73193 * 10 9 7 28 28 H 1.09005 * 110.36600 * 37.05754 * 10 9 7 29 29 H 1.09002 * 111.00097 * 155.08840 * 11 10 9 30 30 H 1.08999 * 111.00452 * 278.93764 * 11 10 9 31 31 H 1.09002 * 109.47382 * 299.97442 * 14 12 11 32 32 H 1.09000 * 109.47431 * 59.97100 * 14 12 11 33 33 H 0.97001 * 119.99856 * 359.97438 * 15 14 12 34 34 H 1.09006 * 109.47580 * 299.99890 * 18 16 15 35 35 H 1.08999 * 109.47595 * 60.00313 * 18 16 15 36 36 H 1.08001 * 124.44348 * 315.24774 * 21 19 18 37 37 H 1.08001 * 124.44097 * 179.97438 * 22 21 19 38 38 H 1.09000 * 110.38267 * 224.75277 * 23 22 21 39 39 H 1.09000 * 110.48118 * 102.42743 * 23 22 21 40 40 H 1.09001 * 111.03519 * 266.59777 * 24 23 22 41 41 H 1.08999 * 111.03736 * 142.66751 * 24 23 22 42 42 H 1.09001 * 109.88389 * 300.46074 * 25 9 7 43 43 H 1.09003 * 109.87977 * 61.62415 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3257 -2.3881 0.0005 10 6 -0.1414 -2.5332 0.0006 11 6 -0.4015 -3.9325 -0.6111 12 6 0.7785 -4.7524 -0.0258 13 1 0.5481 -5.1002 0.9811 14 6 1.1233 -5.9315 -0.9379 15 7 2.2391 -6.6852 -0.3609 16 6 2.7168 -7.7740 -0.9958 17 8 2.2225 -8.1299 -2.0445 18 6 3.8649 -8.5490 -0.4025 19 6 4.2097 -9.7281 -1.3145 20 1 3.3180 -10.3193 -1.5230 21 6 4.8297 -9.2347 -2.6011 22 6 5.8767 -9.9455 -2.9210 23 6 6.1298 -11.0310 -1.9009 24 6 5.3017 -10.6096 -0.6648 25 6 1.9319 -3.7275 0.0005 26 1 -0.4850 0.8400 -0.0004 27 1 -0.5272 -2.4867 1.0189 28 1 -0.5992 -1.7590 -0.6152 29 1 -1.3589 -4.3328 -0.2776 30 1 -0.3518 -3.8985 -1.6994 31 1 0.2550 -6.5835 -1.0329 32 1 1.4071 -5.5587 -1.9221 33 1 2.6342 -6.4008 0.4781 34 1 4.7334 -7.8970 -0.3083 35 1 3.5818 -8.9214 0.5820 36 1 4.4557 -8.4032 -3.1799 37 1 6.4825 -9.7794 -3.7996 38 1 7.1896 -11.0768 -1.6502 39 1 5.7872 -11.9951 -2.2768 40 1 5.9073 -10.0319 0.0334 41 1 4.8624 -11.4779 -0.1736 42 1 2.5582 -3.8510 -0.8830 43 1 2.5286 -3.8643 0.9024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691115600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:06 Heat of formation + Delta-G solvation = -26.828542 kcal Electronic energy + Delta-G solvation = -21303.483525 eV Core-core repulsion = 18155.108994 eV Total energy + Delta-G solvation = -3148.374531 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02743 -39.57675 -38.88185 -35.99732 -34.30488 -32.63892 -31.50730 -29.90460 -29.71042 -27.50795 -26.37185 -24.71967 -22.25060 -21.46283 -21.29747 -20.95849 -19.59838 -18.89294 -17.88776 -17.32180 -16.88298 -16.70978 -16.62005 -15.95606 -15.64434 -15.54172 -14.59112 -14.51583 -14.28097 -13.66759 -13.54608 -13.33678 -13.10328 -12.91191 -12.81917 -12.74480 -12.65424 -12.64453 -12.06493 -12.05544 -11.99369 -11.88729 -11.82911 -11.66828 -11.57405 -11.37281 -10.76065 -10.71029 -10.03286 -9.77468 -8.88769 -7.78012 -5.22330 1.40044 1.45882 1.49126 1.55532 1.73009 2.28836 2.49374 3.31446 3.61828 3.67705 3.75612 3.81258 3.98525 4.02283 4.03001 4.11036 4.38506 4.45736 4.55970 4.61301 4.64816 4.69785 4.70000 4.79634 4.82331 4.91339 5.00394 5.02414 5.07076 5.12243 5.13569 5.31814 5.36425 5.44490 5.46437 5.51051 5.65283 5.71054 5.82254 6.00038 6.31324 6.63065 7.10610 7.33011 7.78711 8.42242 9.23828 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028492 B = 0.003028 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.491055 B = 9243.664884 C = 9845.072304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.068 4.068 3 Si 0.980 3.020 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.241 4.241 8 H 0.080 0.920 9 N -0.629 5.629 10 C 0.152 3.848 11 C -0.124 4.124 12 C -0.093 4.093 13 H 0.097 0.903 14 C 0.144 3.856 15 N -0.721 5.721 16 C 0.506 3.494 17 O -0.585 6.585 18 C -0.126 4.126 19 C -0.054 4.054 20 H 0.071 0.929 21 C -0.170 4.170 22 C -0.176 4.176 23 C -0.100 4.100 24 C -0.115 4.115 25 C 0.139 3.861 26 H 0.247 0.753 27 H -0.009 1.009 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.413 0.587 34 H 0.109 0.891 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.018 0.982 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.408 -21.777 1.403 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.370 4.370 8 H 0.098 0.902 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.163 4.163 12 C -0.112 4.112 13 H 0.116 0.884 14 C 0.020 3.980 15 N -0.373 5.373 16 C 0.294 3.706 17 O -0.465 6.465 18 C -0.165 4.165 19 C -0.072 4.072 20 H 0.090 0.910 21 C -0.188 4.188 22 C -0.194 4.194 23 C -0.137 4.137 24 C -0.153 4.153 25 C 0.014 3.986 26 H 0.057 0.943 27 H 0.009 0.991 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.127 0.873 35 H 0.142 0.858 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.036 0.964 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 9.029 -21.814 0.677 23.619 hybrid contribution 0.183 1.627 0.017 1.637 sum 9.212 -20.188 0.693 22.201 Atomic orbital electron populations 1.70050 1.06220 1.25115 1.58559 1.25651 0.96659 1.01043 1.02725 0.85122 0.77128 0.78706 0.78199 1.20439 1.21926 1.20233 1.19425 0.91012 0.83912 1.42666 0.90228 1.44829 1.02834 1.01035 1.86840 1.21729 0.84102 0.94826 0.96640 1.22852 0.97929 0.95615 0.99875 1.22285 0.95634 0.93343 0.99981 0.88439 1.21128 0.89445 0.91697 0.95727 1.46052 1.35728 1.28476 1.27049 1.21373 0.84582 0.80394 0.84235 1.90678 1.61713 1.69376 1.24771 1.21781 0.96254 0.97281 1.01217 1.20818 0.98751 0.95167 0.92499 0.91046 1.23289 0.97044 0.99821 0.98630 1.23525 0.97958 0.97460 1.00419 1.21398 1.01263 0.97347 0.93709 1.22581 0.95923 0.99511 0.97242 1.21489 0.94764 0.84640 0.97752 0.94317 0.99064 0.91213 0.89242 0.92181 0.91001 0.93519 0.75026 0.87311 0.85751 0.88472 0.85558 0.89857 0.90314 0.89486 0.89377 0.96361 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 2 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 3 Si 0.98 45.82 29.55 68.60 2.03 47.85 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.24 -13.62 10.27 84.03 0.86 -12.76 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -32.44 3.39 -691.99 -2.35 -34.79 16 10 C 0.15 7.48 5.89 86.86 0.51 7.99 16 11 C -0.12 -4.49 6.53 31.99 0.21 -4.28 16 12 C -0.09 -2.92 3.02 -9.61 -0.03 -2.95 16 13 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 14 C 0.14 4.05 4.99 86.38 0.43 4.48 16 15 N -0.72 -16.70 5.40 -463.06 -2.50 -19.20 16 16 C 0.51 12.45 7.63 87.65 0.67 13.12 16 17 O -0.59 -19.47 14.92 -3.03 -0.05 -19.52 16 18 C -0.13 -2.02 5.09 29.85 0.15 -1.86 16 19 C -0.05 -0.97 2.52 -10.85 -0.03 -1.00 16 20 H 0.07 1.54 7.90 -2.39 -0.02 1.52 16 21 C -0.17 -3.73 9.26 26.26 0.24 -3.49 16 22 C -0.18 -3.14 10.77 26.26 0.28 -2.86 16 23 C -0.10 -1.30 6.81 30.53 0.21 -1.10 16 24 C -0.12 -1.37 6.71 31.71 0.21 -1.16 16 25 C 0.14 5.47 6.52 86.73 0.57 6.04 16 26 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.07 3.96 5.87 -2.38 -0.01 3.94 16 29 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.06 2.22 8.05 -2.39 -0.02 2.20 16 31 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.05 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.41 7.52 8.33 -92.71 -0.77 6.75 16 34 H 0.11 1.49 8.13 -2.38 -0.02 1.47 16 35 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 2.63 7.58 -2.91 -0.02 2.61 16 37 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.82 7.91 -2.39 -0.02 0.81 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.02 0.75 7.77 -2.39 -0.02 0.73 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -71.45 343.26 2.32 -69.14 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.21 Total: 16.58 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: 4.76 Total: -3.25 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -4.63 Total: -110.79 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.05 Total: -19.52 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -71.45 2.32 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691115600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.309 kcal (2) G-P(sol) polarization free energy of solvation -71.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds