Wall clock time and date at job start Tue Mar 31 2020 00:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00440 * 2 1 4 4 H 1.48498 * 109.47209 * 89.99105 * 3 2 1 5 5 H 1.48504 * 109.46570 * 329.99433 * 3 2 1 6 6 H 1.48495 * 109.47319 * 209.99681 * 3 2 1 7 7 C 1.38814 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 15.17115 * 7 2 1 9 9 N 1.36932 * 120.00431 * 195.17932 * 7 2 1 10 10 C 1.47071 * 136.05774 * 7.44306 * 9 7 2 11 11 C 1.53748 * 87.88589 * 152.97163 * 10 9 7 12 12 C 1.53005 * 114.26741 * 139.79579 * 11 10 9 13 13 N 1.46498 * 109.47206 * 91.47029 * 12 11 10 14 14 C 1.34778 * 119.99736 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99553 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46715 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.43329 * 54.30139 * 17 16 14 19 19 C 1.54886 * 110.48812 * 291.75911 * 17 16 14 20 20 C 1.54885 * 102.75153 * 203.38423 * 19 17 16 21 21 C 1.54263 * 104.19721 * 37.93632 * 20 19 17 22 22 H 1.08996 * 117.41869 * 195.19834 * 21 20 19 23 23 C 1.53004 * 118.19648 * 40.57486 * 21 20 19 24 24 C 1.53310 * 60.40105 * 266.30828 * 23 21 20 25 25 H 1.08997 * 119.96088 * 248.83440 * 24 23 21 26 26 C 1.47064 * 136.05908 * 187.82899 * 9 7 2 27 27 H 0.96991 * 120.00289 * 174.90671 * 1 2 3 28 28 H 1.08993 * 113.47033 * 267.70597 * 10 9 7 29 29 H 1.09001 * 113.46589 * 38.14337 * 10 9 7 30 30 H 1.09000 * 114.39640 * 272.67298 * 11 10 9 31 31 H 1.08993 * 109.47271 * 211.47906 * 12 11 10 32 32 H 1.09006 * 109.46507 * 331.47577 * 12 11 10 33 33 H 0.96997 * 120.00120 * 0.02562 * 13 12 11 34 34 H 1.08994 * 109.47170 * 300.00173 * 16 14 13 35 35 H 1.08998 * 109.46917 * 60.00694 * 16 14 13 36 36 H 1.09002 * 110.75471 * 321.69382 * 19 17 16 37 37 H 1.08995 * 110.75851 * 84.87688 * 19 17 16 38 38 H 1.08993 * 110.49358 * 156.61927 * 20 19 17 39 39 H 1.09009 * 110.48270 * 279.26472 * 20 19 17 40 40 H 1.09003 * 117.46064 * 13.98143 * 23 21 20 41 41 H 1.09000 * 117.46436 * 158.80631 * 23 21 20 42 42 H 1.08994 * 113.46675 * 321.85560 * 26 9 7 43 43 H 1.09006 * 113.46861 * 92.29612 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 1.4478 2.6526 -0.7002 6 1 3.5479 1.4401 -0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.4985 -2.1213 -0.2438 9 7 3.3438 -1.2228 0.3110 10 6 4.3298 -0.2527 0.8108 11 6 5.1047 -1.4365 1.4126 12 6 6.6245 -1.3299 1.2718 13 7 7.1794 -0.6679 2.4550 14 6 8.5081 -0.4641 2.5522 15 8 9.2443 -0.8284 1.6600 16 6 9.0789 0.2165 3.7697 17 6 10.5987 0.3231 3.6287 18 1 10.8604 0.8155 2.6922 19 6 11.2499 -1.0802 3.7038 20 6 12.6974 -0.7618 4.1537 21 6 12.5345 0.3941 5.1621 22 1 13.4283 0.9591 5.4267 23 6 11.3681 0.3323 6.1505 24 6 11.1997 1.0870 4.8267 25 1 11.1064 2.1730 4.8272 26 6 4.4217 -2.2228 0.2851 27 1 -0.4850 -0.8366 -0.0746 28 1 4.8718 0.2629 0.0182 29 1 3.9267 0.4295 1.5592 30 1 4.7839 -1.7219 2.4145 31 1 7.0518 -2.3284 1.1801 32 1 6.8670 -0.7479 0.3826 33 1 6.5906 -0.3769 3.1687 34 1 8.6519 1.2151 3.8614 35 1 8.8361 -0.3657 4.6586 36 1 10.7438 -1.7019 4.4424 37 1 11.2433 -1.5619 2.7261 38 1 13.1463 -1.6294 4.6371 39 1 13.3000 -0.4436 3.3028 40 1 10.8492 -0.6204 6.2566 41 1 11.4479 0.9275 7.0601 42 1 4.0970 -3.2189 0.5855 43 1 4.9881 -2.2265 -0.6463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692315295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:00 Heat of formation + Delta-G solvation = 36.095212 kcal Electronic energy + Delta-G solvation = -21303.215821 eV Core-core repulsion = 18157.569869 eV Total energy + Delta-G solvation = -3145.645952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.45780 -39.30989 -38.39749 -34.56171 -32.66027 -32.36868 -30.65657 -29.23360 -26.53190 -25.29014 -24.82481 -23.75221 -21.54702 -20.65490 -19.98670 -19.45690 -19.06161 -17.48337 -17.24329 -16.40983 -16.08281 -15.58226 -15.20658 -14.78196 -14.23229 -13.92489 -13.76800 -13.57927 -13.28552 -13.20277 -12.77442 -12.76652 -12.01523 -11.88776 -11.64130 -11.53132 -11.20075 -11.14619 -11.02602 -10.90313 -10.87821 -10.50982 -10.31680 -10.08571 -9.93625 -9.63898 -9.50194 -9.19656 -8.93293 -8.71946 -7.19945 -6.32313 -3.24312 2.68388 3.19553 3.38556 3.43207 3.47373 3.61329 4.14701 4.36662 4.57510 4.60156 4.70518 4.77315 4.78797 4.90923 4.96191 5.04474 5.14178 5.21217 5.27866 5.33108 5.44552 5.48348 5.50973 5.57560 5.62062 5.71654 5.78059 5.83241 5.91139 5.97036 6.00885 6.10698 6.17790 6.19463 6.23395 6.29882 6.38209 6.56054 6.90811 7.11626 7.55574 8.22396 8.27109 8.95912 9.49132 10.35973 11.17691 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.003028 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.093017 B = 9245.410419 C = 9644.995538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.025 4.025 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.282 1.282 7 C -0.305 4.305 8 H 0.082 0.918 9 N -0.625 5.625 10 C 0.107 3.893 11 C -0.145 4.145 12 C 0.131 3.869 13 N -0.727 5.727 14 C 0.509 3.491 15 O -0.544 6.544 16 C -0.133 4.133 17 C -0.045 4.045 18 H 0.088 0.912 19 C -0.123 4.123 20 C -0.097 4.097 21 C -0.168 4.168 22 H 0.107 0.893 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.110 0.890 26 C 0.128 3.872 27 H 0.261 0.739 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.281 0.493 12.161 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.224 4.224 3 Si 0.895 3.105 4 H -0.221 1.221 5 H -0.222 1.222 6 H -0.208 1.208 7 C -0.432 4.432 8 H 0.099 0.901 9 N -0.353 5.353 10 C -0.019 4.019 11 C -0.164 4.164 12 C 0.007 3.993 13 N -0.379 5.379 14 C 0.295 3.705 15 O -0.421 6.421 16 C -0.173 4.173 17 C -0.064 4.064 18 H 0.106 0.894 19 C -0.160 4.160 20 C -0.134 4.134 21 C -0.186 4.186 22 H 0.125 0.875 23 C -0.191 4.191 24 C -0.182 4.182 25 H 0.128 0.872 26 C 0.001 3.999 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 24.321 1.855 11.469 26.954 hybrid contribution -0.213 -1.407 0.166 1.433 sum 24.108 0.448 11.636 26.773 Atomic orbital electron populations 1.70897 1.05414 1.29576 1.51521 1.25792 0.96510 1.00924 0.99159 0.83762 0.74561 0.75802 0.76415 1.22130 1.22238 1.20842 1.20145 0.80450 0.95985 1.46590 0.90057 1.46193 1.03608 1.08186 1.77302 1.22780 0.90008 0.93231 0.95858 1.23507 0.91469 1.00823 1.00641 1.21345 0.92884 0.97375 0.87701 1.46125 1.07538 1.61218 1.23000 1.20714 0.82112 0.79136 0.88496 1.90673 1.58854 1.51324 1.41266 1.21681 0.96820 1.02086 0.96758 1.21313 0.92043 0.95959 0.97063 0.89352 1.22588 0.94814 0.96370 1.02275 1.21932 0.97451 0.96792 0.97240 1.23166 0.92586 1.01260 1.01579 0.87505 1.22939 1.01240 1.02041 0.92884 1.23255 1.00781 0.98538 0.95597 0.87207 1.22288 0.88851 0.94358 0.94422 0.92849 0.93677 0.93142 0.88321 0.91505 0.91328 0.76473 0.88808 0.88987 0.91865 0.89885 0.91683 0.90960 0.88932 0.88501 0.93462 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.70 55.49 0.76 -28.73 16 2 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 3 Si 1.06 26.62 25.50 -169.99 -4.34 22.28 16 4 H -0.29 -6.96 6.97 56.52 0.39 -6.57 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.08 16 6 H -0.28 -6.60 5.66 56.52 0.32 -6.28 16 7 C -0.31 -8.84 11.03 -15.06 -0.17 -9.01 16 8 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 9 N -0.63 -15.32 3.62 -184.62 -0.67 -15.99 16 10 C 0.11 2.18 5.19 -8.38 -0.04 2.14 16 11 C -0.14 -2.33 4.11 -89.97 -0.37 -2.70 16 12 C 0.13 1.82 5.59 -4.04 -0.02 1.80 16 13 N -0.73 -8.55 5.56 -60.29 -0.33 -8.88 16 14 C 0.51 6.19 7.63 -10.98 -0.08 6.11 16 15 O -0.54 -8.50 14.61 5.56 0.08 -8.42 16 16 C -0.13 -1.16 5.24 -27.88 -0.15 -1.31 16 17 C -0.05 -0.41 2.39 -88.96 -0.21 -0.62 16 18 H 0.09 0.94 7.96 -51.93 -0.41 0.53 16 19 C -0.12 -1.16 5.21 -24.74 -0.13 -1.29 16 20 C -0.10 -0.78 6.77 -25.08 -0.17 -0.95 16 21 C -0.17 -1.26 7.06 -89.39 -0.63 -1.89 16 22 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 23 C -0.15 -1.07 9.83 -26.57 -0.26 -1.33 16 24 C -0.16 -1.26 6.45 -89.23 -0.58 -1.83 16 25 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 26 C 0.13 2.46 8.25 -8.52 -0.07 2.39 16 27 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 28 H 0.05 0.93 6.76 -51.93 -0.35 0.58 16 29 H 0.05 1.05 6.22 -51.93 -0.32 0.73 16 30 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.04 7.81 -51.93 -0.41 0.64 16 33 H 0.40 3.84 8.47 -40.82 -0.35 3.50 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.67 8.06 -51.93 -0.42 0.25 16 36 H 0.06 0.57 7.24 -51.93 -0.38 0.19 16 37 H 0.08 0.95 7.16 -51.93 -0.37 0.57 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.09 0.65 7.21 -51.93 -0.37 0.28 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.04 0.70 8.11 -51.93 -0.42 0.28 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -33.56 338.03 -9.65 -43.21 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.27 Total: 0.76 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.98 Total: -9.33 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.24 Total: -53.61 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 26.62 SS G_CDS: -4.34 Total: 22.28 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.56 -9.65 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692315295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.307 kcal (2) G-P(sol) polarization free energy of solvation -33.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds