Wall clock time and date at job start Tue Mar 31 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00440 * 2 1 4 4 H 1.48498 * 109.47209 * 89.99105 * 3 2 1 5 5 H 1.48504 * 109.46570 * 329.99433 * 3 2 1 6 6 H 1.48495 * 109.47319 * 209.99681 * 3 2 1 7 7 C 1.38814 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 15.17115 * 7 2 1 9 9 N 1.36932 * 120.00431 * 195.17932 * 7 2 1 10 10 C 1.47071 * 136.05774 * 7.44306 * 9 7 2 11 11 C 1.53748 * 87.88589 * 152.97163 * 10 9 7 12 12 C 1.53005 * 114.26741 * 139.79579 * 11 10 9 13 13 N 1.46498 * 109.47206 * 91.47029 * 12 11 10 14 14 C 1.34778 * 119.99736 * 179.97438 * 13 12 11 15 15 O 1.21274 * 120.00132 * 0.02562 * 14 13 12 16 16 C 1.50707 * 119.99553 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.46715 * 180.02562 * 16 14 13 18 18 H 1.08999 * 110.43329 * 54.30139 * 17 16 14 19 19 C 1.54886 * 110.48812 * 291.75911 * 17 16 14 20 20 C 1.54885 * 102.75153 * 203.38423 * 19 17 16 21 21 C 1.54263 * 104.19721 * 37.93632 * 20 19 17 22 22 H 1.08996 * 117.41869 * 195.19834 * 21 20 19 23 23 C 1.53004 * 118.19648 * 40.57486 * 21 20 19 24 24 C 1.53310 * 60.40105 * 266.30828 * 23 21 20 25 25 H 1.08997 * 119.96088 * 248.83440 * 24 23 21 26 26 C 1.47064 * 136.05908 * 187.82899 * 9 7 2 27 27 H 0.96991 * 120.00289 * 174.90671 * 1 2 3 28 28 H 1.08993 * 113.47033 * 267.70597 * 10 9 7 29 29 H 1.09001 * 113.46589 * 38.14337 * 10 9 7 30 30 H 1.09000 * 114.39640 * 272.67298 * 11 10 9 31 31 H 1.08993 * 109.47271 * 211.47906 * 12 11 10 32 32 H 1.09006 * 109.46507 * 331.47577 * 12 11 10 33 33 H 0.96997 * 120.00120 * 0.02562 * 13 12 11 34 34 H 1.08994 * 109.47170 * 300.00173 * 16 14 13 35 35 H 1.08998 * 109.46917 * 60.00694 * 16 14 13 36 36 H 1.09002 * 110.75471 * 321.69382 * 19 17 16 37 37 H 1.08995 * 110.75851 * 84.87688 * 19 17 16 38 38 H 1.08993 * 110.49358 * 156.61927 * 20 19 17 39 39 H 1.09009 * 110.48270 * 279.26472 * 20 19 17 40 40 H 1.09003 * 117.46064 * 13.98143 * 23 21 20 41 41 H 1.09000 * 117.46436 * 158.80631 * 23 21 20 42 42 H 1.08994 * 113.46675 * 321.85560 * 26 9 7 43 43 H 1.09006 * 113.46861 * 92.29612 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 1.4478 2.6526 -0.7002 6 1 3.5479 1.4401 -0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.4985 -2.1213 -0.2438 9 7 3.3438 -1.2228 0.3110 10 6 4.3298 -0.2527 0.8108 11 6 5.1047 -1.4365 1.4126 12 6 6.6245 -1.3299 1.2718 13 7 7.1794 -0.6679 2.4550 14 6 8.5081 -0.4641 2.5522 15 8 9.2443 -0.8284 1.6600 16 6 9.0789 0.2165 3.7697 17 6 10.5987 0.3231 3.6287 18 1 10.8604 0.8155 2.6922 19 6 11.2499 -1.0802 3.7038 20 6 12.6974 -0.7618 4.1537 21 6 12.5345 0.3941 5.1621 22 1 13.4283 0.9591 5.4267 23 6 11.3681 0.3323 6.1505 24 6 11.1997 1.0870 4.8267 25 1 11.1064 2.1730 4.8272 26 6 4.4217 -2.2228 0.2851 27 1 -0.4850 -0.8366 -0.0746 28 1 4.8718 0.2629 0.0182 29 1 3.9267 0.4295 1.5592 30 1 4.7839 -1.7219 2.4145 31 1 7.0518 -2.3284 1.1801 32 1 6.8670 -0.7479 0.3826 33 1 6.5906 -0.3769 3.1687 34 1 8.6519 1.2151 3.8614 35 1 8.8361 -0.3657 4.6586 36 1 10.7438 -1.7019 4.4424 37 1 11.2433 -1.5619 2.7261 38 1 13.1463 -1.6294 4.6371 39 1 13.3000 -0.4436 3.3028 40 1 10.8492 -0.6204 6.2566 41 1 11.4479 0.9275 7.0601 42 1 4.0970 -3.2189 0.5855 43 1 4.9881 -2.2265 -0.6463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692315295.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:59 Heat of formation + Delta-G solvation = 13.841108 kcal Electronic energy + Delta-G solvation = -21304.180832 eV Core-core repulsion = 18157.569869 eV Total energy + Delta-G solvation = -3146.610963 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.26525 -40.46101 -39.63945 -35.77005 -34.50806 -33.31920 -31.44863 -30.70725 -27.88413 -26.91060 -25.89215 -24.36281 -23.22316 -21.70097 -20.94637 -20.52653 -19.81632 -19.53234 -18.10179 -17.28722 -17.19156 -16.88890 -16.42425 -15.85292 -15.79016 -15.27811 -15.11000 -14.70790 -14.43911 -14.21954 -13.90026 -13.54131 -13.38627 -13.17714 -12.82176 -12.66832 -12.56154 -12.25563 -12.08384 -11.90413 -11.83974 -11.77421 -11.54574 -11.46075 -11.07031 -10.89307 -10.84177 -10.75049 -10.35763 -9.98357 -9.25350 -8.63614 -5.47893 1.38342 1.51440 1.66021 1.75862 2.27386 2.52735 2.85074 3.02164 3.14921 3.46917 3.54864 3.74394 3.93130 3.98807 4.06388 4.19113 4.25963 4.31862 4.40468 4.46677 4.52137 4.63007 4.64526 4.67513 4.72812 4.73603 4.81535 4.87620 4.92725 4.96020 5.01252 5.08957 5.14379 5.20928 5.33211 5.38464 5.42012 5.43356 5.49471 5.56882 5.94754 6.66061 6.69258 7.32265 7.36251 8.27665 8.87907 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036209 B = 0.003028 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.093017 B = 9245.410419 C = 9644.995538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.086 4.086 3 Si 1.103 2.897 4 H -0.270 1.270 5 H -0.304 1.304 6 H -0.258 1.258 7 C -0.294 4.294 8 H 0.048 0.952 9 N -0.660 5.660 10 C 0.099 3.901 11 C -0.106 4.106 12 C 0.142 3.858 13 N -0.721 5.721 14 C 0.507 3.493 15 O -0.582 6.582 16 C -0.125 4.125 17 C -0.046 4.046 18 H 0.067 0.933 19 C -0.123 4.123 20 C -0.097 4.097 21 C -0.174 4.174 22 H 0.116 0.884 23 C -0.145 4.145 24 C -0.165 4.165 25 H 0.118 0.882 26 C 0.121 3.879 27 H 0.246 0.754 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.415 0.585 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.051 0.949 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.697 1.452 14.262 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.277 4.277 3 Si 0.928 3.072 4 H -0.196 1.196 5 H -0.232 1.232 6 H -0.183 1.183 7 C -0.422 4.422 8 H 0.066 0.934 9 N -0.388 5.388 10 C -0.026 4.026 11 C -0.125 4.125 12 C 0.017 3.983 13 N -0.373 5.373 14 C 0.295 3.705 15 O -0.462 6.462 16 C -0.165 4.165 17 C -0.065 4.065 18 H 0.085 0.915 19 C -0.160 4.160 20 C -0.135 4.135 21 C -0.192 4.192 22 H 0.134 0.866 23 C -0.182 4.182 24 C -0.183 4.183 25 H 0.136 0.864 26 C -0.005 4.005 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.133 0.867 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 26.780 2.786 13.606 30.167 hybrid contribution -0.910 -1.855 -0.524 2.132 sum 25.870 0.931 13.082 29.005 Atomic orbital electron populations 1.71006 1.06771 1.28747 1.54841 1.27132 0.96522 1.04594 0.99501 0.83284 0.74248 0.71780 0.77871 1.19583 1.23202 1.18326 1.20003 0.83088 0.94635 1.44466 0.93438 1.46298 1.03329 1.11449 1.77748 1.23004 0.89347 0.94127 0.96097 1.23156 0.92410 0.96927 1.00016 1.21070 0.91016 0.97867 0.88324 1.46025 1.07797 1.60859 1.22644 1.21317 0.81740 0.78445 0.88961 1.90671 1.59729 1.52932 1.42910 1.21704 0.96161 1.03031 0.95596 1.21249 0.92589 0.95684 0.96943 0.91463 1.22533 0.95943 0.96569 1.00970 1.21918 0.96596 0.97481 0.97459 1.23229 0.93137 1.00983 1.01882 0.86628 1.23024 1.00200 1.02044 0.92895 1.23219 1.00730 0.98854 0.95478 0.86364 1.22534 0.87606 0.94059 0.96289 0.94455 0.93117 0.93093 0.86724 0.90923 0.92340 0.74872 0.86817 0.86836 0.91316 0.92507 0.91095 0.91452 0.88861 0.87045 0.93055 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.02 13.70 21.65 0.30 -62.72 16 2 C -0.09 -5.15 5.50 84.86 0.47 -4.68 16 3 Si 1.10 53.01 25.50 68.60 1.75 54.76 16 4 H -0.27 -11.82 6.97 99.48 0.69 -11.13 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 6 H -0.26 -11.24 5.66 99.48 0.56 -10.68 16 7 C -0.29 -17.27 11.03 84.03 0.93 -16.35 16 8 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 9 N -0.66 -31.58 3.62 -738.03 -2.67 -34.26 16 10 C 0.10 3.76 5.19 83.26 0.43 4.19 16 11 C -0.11 -3.07 4.11 -10.37 -0.04 -3.11 16 12 C 0.14 3.51 5.59 86.38 0.48 4.00 16 13 N -0.72 -14.53 5.56 -463.05 -2.57 -17.10 16 14 C 0.51 11.09 7.63 87.66 0.67 11.76 16 15 O -0.58 -17.54 14.61 -3.01 -0.04 -17.58 16 16 C -0.13 -1.79 5.24 29.85 0.16 -1.64 16 17 C -0.05 -0.76 2.39 -9.72 -0.02 -0.78 16 18 H 0.07 1.39 7.96 -2.39 -0.02 1.37 16 19 C -0.12 -2.17 5.21 31.88 0.17 -2.01 16 20 C -0.10 -1.45 6.77 31.67 0.21 -1.23 16 21 C -0.17 -2.22 7.06 -10.00 -0.07 -2.29 16 22 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 23 C -0.14 -1.54 9.83 30.70 0.30 -1.24 16 24 C -0.16 -2.09 6.45 -9.89 -0.06 -2.16 16 25 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 26 C 0.12 4.42 8.25 83.17 0.69 5.11 16 27 H 0.25 16.11 8.73 -92.71 -0.81 15.30 16 28 H 0.05 1.91 6.76 -2.39 -0.02 1.90 16 29 H 0.05 1.95 6.22 -2.39 -0.01 1.94 16 30 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.62 7.81 -2.38 -0.02 1.60 16 33 H 0.41 6.22 8.47 -92.71 -0.79 5.43 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.18 8.06 -2.39 -0.02 1.17 16 36 H 0.07 1.11 7.24 -2.39 -0.02 1.10 16 37 H 0.06 1.30 7.16 -2.39 -0.02 1.29 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.04 8.14 -2.38 -0.02 1.03 16 40 H 0.09 1.00 7.21 -2.39 -0.02 0.98 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.05 1.74 8.11 -2.38 -0.02 1.72 16 Total: -1.00 -74.49 338.03 1.07 -73.42 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.01 Total: 13.90 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.30 Total: -10.42 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -4.95 Total: -114.08 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.04 Total: -17.58 kcal Atomic # 14 Polarization: 53.01 SS G_CDS: 1.75 Total: 54.76 kcal Total: -74.49 1.07 -73.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692315295.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.265 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds