Wall clock time and date at job start Tue Mar 31 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47209 * 270.00198 * 3 2 1 5 5 H 1.48494 * 109.46976 * 30.00070 * 3 2 1 6 6 H 1.48503 * 109.47083 * 150.00506 * 3 2 1 7 7 C 1.38820 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00096 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.48907 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11463 * 155.36844 * 10 9 7 12 12 C 1.52993 * 113.74596 * 137.95615 * 11 10 9 13 13 N 1.46496 * 109.47551 * 176.92371 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46925 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43521 * 54.29105 * 17 16 14 19 19 C 1.54895 * 110.48520 * 291.75700 * 17 16 14 20 20 C 1.54890 * 102.74862 * 203.37759 * 19 17 16 21 21 C 1.54269 * 104.19340 * 37.94474 * 20 19 17 22 22 H 1.09000 * 117.41242 * 116.36981 * 21 20 19 23 23 C 1.53003 * 118.19667 * 272.20984 * 21 20 19 24 24 C 1.52862 * 60.50150 * 93.59132 * 23 21 20 25 25 H 1.08996 * 119.72681 * 111.14637 * 24 23 21 26 26 C 1.47815 * 134.45917 * 359.87827 * 9 7 2 27 27 H 0.96998 * 119.99498 * 359.97438 * 1 2 3 28 28 H 1.08996 * 113.77054 * 41.06549 * 10 9 7 29 29 H 1.09005 * 113.87379 * 269.67559 * 10 9 7 30 30 H 1.09009 * 113.73808 * 269.15411 * 11 10 9 31 31 H 1.09000 * 109.47250 * 56.92149 * 12 11 10 32 32 H 1.09004 * 109.46862 * 296.92172 * 12 11 10 33 33 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 34 34 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 35 35 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 36 36 H 1.09003 * 110.75617 * 321.69525 * 19 17 16 37 37 H 1.08999 * 110.75618 * 85.06437 * 19 17 16 38 38 H 1.09001 * 110.48401 * 156.61936 * 20 19 17 39 39 H 1.08996 * 110.48923 * 279.26149 * 20 19 17 40 40 H 1.08993 * 117.45749 * 201.21989 * 23 21 20 41 41 H 1.08997 * 117.45973 * 346.01615 * 23 21 20 42 42 H 1.08999 * 113.76973 * 90.36876 * 26 9 7 43 43 H 1.09000 * 113.83319 * 318.91460 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6396 12 6 -0.3636 -5.3136 0.0727 13 7 -1.6197 -5.5282 0.7953 14 6 -2.4186 -6.5623 0.4657 15 8 -2.0980 -7.3151 -0.4295 16 6 -3.7105 -6.7833 1.2097 17 6 -4.4216 -8.0136 0.6425 18 1 -3.7573 -8.8777 0.6577 19 6 -4.9179 -7.7368 -0.7984 20 6 -6.0704 -8.7581 -0.9651 21 6 -6.7594 -8.7794 0.4150 22 1 -7.7937 -8.4389 0.4648 23 6 -6.2264 -9.7462 1.4743 24 6 -5.7091 -8.3082 1.4393 25 1 -5.9702 -7.6202 2.2435 26 6 -0.1058 -2.7571 0.0022 27 1 -0.4849 0.8401 0.0004 28 1 2.5628 -4.0327 0.6530 29 1 1.8319 -4.2363 -0.9985 30 1 0.3605 -4.0647 1.7295 31 1 0.2762 -6.1885 0.1885 32 1 -0.5753 -5.1557 -0.9849 33 1 -1.8760 -4.9263 1.5116 34 1 -3.4985 -6.9411 2.2671 35 1 -4.3506 -5.9086 1.0939 36 1 -5.2898 -6.7162 -0.8895 37 1 -4.1259 -7.9265 -1.5229 38 1 -6.7671 -8.4247 -1.7342 39 1 -5.6744 -9.7438 -1.2091 40 1 -6.8973 -10.0191 2.2887 41 1 -5.5477 -10.5317 1.1419 42 1 -0.5319 -2.8717 -0.9945 43 1 -0.7185 -2.1402 0.6596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692315298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:04 Heat of formation + Delta-G solvation = 28.603338 kcal Electronic energy + Delta-G solvation = -21172.164816 eV Core-core repulsion = 18026.193992 eV Total energy + Delta-G solvation = -3145.970824 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21598 -39.04601 -37.89718 -34.34847 -32.81272 -32.15821 -30.64708 -28.83698 -26.41631 -24.91538 -24.69064 -22.88947 -21.90632 -20.65197 -20.23675 -19.63308 -18.93232 -16.92673 -16.59479 -16.26419 -15.63008 -15.45446 -14.98910 -14.78179 -14.07895 -13.69329 -13.62250 -13.28797 -13.06818 -12.95554 -12.78646 -12.42258 -11.94470 -11.44214 -11.38346 -11.32406 -11.23872 -11.00446 -10.84370 -10.78164 -10.69334 -10.57266 -10.33256 -9.99130 -9.79181 -9.75106 -9.58220 -9.40255 -8.80928 -8.76392 -6.88654 -5.77867 -3.09853 2.81803 3.36188 3.38636 3.43153 3.44056 3.45127 4.30425 4.44645 4.48480 4.56537 4.85146 4.96646 5.05966 5.13762 5.18180 5.30611 5.32688 5.33290 5.36529 5.41517 5.50195 5.57828 5.67127 5.69056 5.77041 5.84617 5.86100 5.99494 6.05806 6.06667 6.19373 6.26375 6.35058 6.37511 6.57665 6.65701 6.77939 7.20998 7.34952 7.54165 7.72123 7.97195 8.41613 9.03908 9.70005 10.59276 11.39369 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038184 B = 0.002749 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.122895 B =10182.888656 C =10491.664183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.613 5.613 10 C 0.128 3.872 11 C -0.153 4.153 12 C 0.130 3.870 13 N -0.724 5.724 14 C 0.509 3.491 15 O -0.546 6.546 16 C -0.134 4.134 17 C -0.045 4.045 18 H 0.082 0.918 19 C -0.116 4.116 20 C -0.097 4.097 21 C -0.169 4.169 22 H 0.107 0.893 23 C -0.154 4.154 24 C -0.164 4.164 25 H 0.110 0.890 26 C 0.169 3.831 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.027 0.973 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.445 -17.045 4.050 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.350 4.350 8 H 0.097 0.903 9 N -0.339 5.339 10 C 0.001 3.999 11 C -0.173 4.173 12 C 0.006 3.994 13 N -0.375 5.375 14 C 0.295 3.705 15 O -0.424 6.424 16 C -0.174 4.174 17 C -0.064 4.064 18 H 0.100 0.900 19 C -0.154 4.154 20 C -0.135 4.135 21 C -0.187 4.187 22 H 0.125 0.875 23 C -0.191 4.191 24 C -0.182 4.182 25 H 0.128 0.872 26 C 0.044 3.956 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.045 0.955 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.148 -17.197 3.395 21.327 hybrid contribution 0.287 1.376 0.286 1.434 sum -11.861 -15.821 3.681 20.113 Atomic orbital electron populations 1.69813 1.05008 1.25299 1.56820 1.24788 0.95702 0.97534 1.02548 0.86115 0.78620 0.83411 0.77591 1.21626 1.21629 1.20621 1.19039 0.90298 0.82030 1.43637 0.90260 1.45999 1.02488 0.99303 1.86148 1.22486 0.94058 0.86451 0.96871 1.23797 0.98186 0.94816 1.00486 1.21419 0.83827 0.97829 0.96319 1.46104 1.22627 1.30114 1.38653 1.20637 0.85434 0.80541 0.83839 1.90665 1.74497 1.45904 1.31349 1.21706 0.94709 1.00233 1.00740 1.21295 0.93955 0.97082 0.94019 0.89981 1.22761 0.97331 0.98829 0.96438 1.21969 0.97014 0.99673 0.94795 1.23301 0.98245 1.05483 0.91663 0.87499 1.23018 1.02776 0.92763 1.00497 1.23310 0.95737 0.97807 1.01312 0.87189 1.22349 0.88059 0.88474 0.96740 0.93681 0.93705 0.94685 0.89272 0.92116 0.91541 0.76449 0.88944 0.88777 0.91634 0.90028 0.91403 0.91575 0.88630 0.89026 0.95544 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 11.39 55.49 0.63 -26.61 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.74 3.70 -177.68 -0.66 -16.39 16 10 C 0.13 2.58 8.51 -2.96 -0.03 2.56 16 11 C -0.15 -2.72 3.93 -89.69 -0.35 -3.07 16 12 C 0.13 2.02 5.51 -4.05 -0.02 1.99 16 13 N -0.72 -9.61 5.56 -60.30 -0.33 -9.95 16 14 C 0.51 6.85 7.63 -10.98 -0.08 6.76 16 15 O -0.55 -9.22 14.61 5.56 0.08 -9.14 16 16 C -0.13 -1.30 5.18 -27.88 -0.14 -1.45 16 17 C -0.04 -0.45 2.25 -88.96 -0.20 -0.65 16 18 H 0.08 0.95 7.96 -51.93 -0.41 0.53 16 19 C -0.12 -1.25 5.69 -24.73 -0.14 -1.39 16 20 C -0.10 -0.88 6.63 -25.07 -0.17 -1.05 16 21 C -0.17 -1.42 6.95 -89.39 -0.62 -2.04 16 22 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 23 C -0.15 -1.20 10.06 -26.80 -0.27 -1.47 16 24 C -0.16 -1.39 6.37 -89.46 -0.57 -1.96 16 25 H 0.11 0.84 8.05 -51.93 -0.42 0.42 16 26 C 0.17 3.87 7.08 -2.83 -0.02 3.85 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.14 7.88 -51.93 -0.41 0.73 16 33 H 0.40 4.54 8.47 -40.82 -0.35 4.20 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.81 8.06 -51.93 -0.42 0.40 16 36 H 0.06 0.70 8.00 -51.93 -0.42 0.28 16 37 H 0.08 1.04 7.17 -51.93 -0.37 0.67 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.64 7.92 -51.93 -0.41 0.22 16 43 H 0.07 1.80 7.17 -51.93 -0.37 1.43 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -32.30 346.30 -10.30 -42.60 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -7.35 Total: 1.84 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -2.87 Total: -4.71 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.36 Total: -52.95 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.30 -10.30 -42.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692315298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.208 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds