Wall clock time and date at job start Tue Mar 31 2020 00:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47209 * 270.00198 * 3 2 1 5 5 H 1.48494 * 109.46976 * 30.00070 * 3 2 1 6 6 H 1.48503 * 109.47083 * 150.00506 * 3 2 1 7 7 C 1.38820 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00096 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99790 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.48907 * 179.97438 * 9 7 2 11 11 C 1.53950 * 86.11463 * 155.36844 * 10 9 7 12 12 C 1.52993 * 113.74596 * 137.95615 * 11 10 9 13 13 N 1.46496 * 109.47551 * 176.92371 * 12 11 10 14 14 C 1.34777 * 120.00258 * 180.02562 * 13 12 11 15 15 O 1.21279 * 120.00166 * 359.97438 * 14 13 12 16 16 C 1.50706 * 119.99762 * 179.97438 * 14 13 12 17 17 C 1.53002 * 109.46925 * 179.97438 * 16 14 13 18 18 H 1.08998 * 110.43521 * 54.29105 * 17 16 14 19 19 C 1.54895 * 110.48520 * 291.75700 * 17 16 14 20 20 C 1.54890 * 102.74862 * 203.37759 * 19 17 16 21 21 C 1.54269 * 104.19340 * 37.94474 * 20 19 17 22 22 H 1.09000 * 117.41242 * 116.36981 * 21 20 19 23 23 C 1.53003 * 118.19667 * 272.20984 * 21 20 19 24 24 C 1.52862 * 60.50150 * 93.59132 * 23 21 20 25 25 H 1.08996 * 119.72681 * 111.14637 * 24 23 21 26 26 C 1.47815 * 134.45917 * 359.87827 * 9 7 2 27 27 H 0.96998 * 119.99498 * 359.97438 * 1 2 3 28 28 H 1.08996 * 113.77054 * 41.06549 * 10 9 7 29 29 H 1.09005 * 113.87379 * 269.67559 * 10 9 7 30 30 H 1.09009 * 113.73808 * 269.15411 * 11 10 9 31 31 H 1.09000 * 109.47250 * 56.92149 * 12 11 10 32 32 H 1.09004 * 109.46862 * 296.92172 * 12 11 10 33 33 H 0.96999 * 119.99694 * 359.97438 * 13 12 11 34 34 H 1.09000 * 109.47318 * 299.99141 * 16 14 13 35 35 H 1.09000 * 109.47161 * 59.99772 * 16 14 13 36 36 H 1.09003 * 110.75617 * 321.69525 * 19 17 16 37 37 H 1.08999 * 110.75618 * 85.06437 * 19 17 16 38 38 H 1.09001 * 110.48401 * 156.61936 * 20 19 17 39 39 H 1.08996 * 110.48923 * 279.26149 * 20 19 17 40 40 H 1.08993 * 117.45749 * 201.21989 * 23 21 20 41 41 H 1.08997 * 117.45973 * 346.01615 * 23 21 20 42 42 H 1.08999 * 113.76973 * 90.36876 * 26 9 7 43 43 H 1.09000 * 113.83319 * 318.91460 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 1.7201 -3.8102 -0.0015 11 6 0.3474 -4.0832 0.6396 12 6 -0.3636 -5.3136 0.0727 13 7 -1.6197 -5.5282 0.7953 14 6 -2.4186 -6.5623 0.4657 15 8 -2.0980 -7.3151 -0.4295 16 6 -3.7105 -6.7833 1.2097 17 6 -4.4216 -8.0136 0.6425 18 1 -3.7573 -8.8777 0.6577 19 6 -4.9179 -7.7368 -0.7984 20 6 -6.0704 -8.7581 -0.9651 21 6 -6.7594 -8.7794 0.4150 22 1 -7.7937 -8.4389 0.4648 23 6 -6.2264 -9.7462 1.4743 24 6 -5.7091 -8.3082 1.4393 25 1 -5.9702 -7.6202 2.2435 26 6 -0.1058 -2.7571 0.0022 27 1 -0.4849 0.8401 0.0004 28 1 2.5628 -4.0327 0.6530 29 1 1.8319 -4.2363 -0.9985 30 1 0.3605 -4.0647 1.7295 31 1 0.2762 -6.1885 0.1885 32 1 -0.5753 -5.1557 -0.9849 33 1 -1.8760 -4.9263 1.5116 34 1 -3.4985 -6.9411 2.2671 35 1 -4.3506 -5.9086 1.0939 36 1 -5.2898 -6.7162 -0.8895 37 1 -4.1259 -7.9265 -1.5229 38 1 -6.7671 -8.4247 -1.7342 39 1 -5.6744 -9.7438 -1.2091 40 1 -6.8973 -10.0191 2.2887 41 1 -5.5477 -10.5317 1.1419 42 1 -0.5319 -2.8717 -0.9945 43 1 -0.7185 -2.1402 0.6596 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692315298.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:03 Heat of formation + Delta-G solvation = 9.119124 kcal Electronic energy + Delta-G solvation = -21173.009715 eV Core-core repulsion = 18026.193992 eV Total energy + Delta-G solvation = -3146.815723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.14962 -40.13863 -39.40591 -35.68347 -34.17301 -33.58694 -31.50198 -30.44442 -27.91403 -26.56728 -25.96029 -23.81067 -23.40466 -21.61500 -21.20348 -20.48912 -20.31311 -18.76021 -17.83691 -17.25227 -16.99003 -16.55266 -16.44671 -15.83203 -15.71891 -15.20891 -14.83174 -14.38492 -14.22373 -13.99767 -13.80748 -13.65292 -13.28697 -13.11505 -12.89040 -12.78760 -12.51983 -12.23855 -12.12476 -11.98866 -11.81967 -11.65346 -11.58900 -11.50509 -11.27185 -10.99168 -10.87870 -10.65598 -10.46498 -9.97243 -8.92490 -7.91242 -5.24480 1.45294 1.47252 1.55860 1.75550 2.29919 2.47300 2.78113 3.29416 3.39391 3.55899 3.75062 3.75624 3.85434 4.02251 4.11955 4.29117 4.34939 4.37319 4.44143 4.55466 4.60559 4.61744 4.67180 4.75542 4.78198 4.86115 4.90407 4.95643 4.99229 5.03792 5.10695 5.12339 5.24987 5.25944 5.38633 5.40442 5.49750 5.55925 5.57998 5.65961 5.93798 6.66769 6.92026 7.35832 7.60175 8.56068 9.25623 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038184 B = 0.002749 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.122895 B =10182.888656 C =10491.664183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.237 4.237 8 H 0.083 0.917 9 N -0.646 5.646 10 C 0.125 3.875 11 C -0.113 4.113 12 C 0.142 3.858 13 N -0.720 5.720 14 C 0.506 3.494 15 O -0.584 6.584 16 C -0.126 4.126 17 C -0.045 4.045 18 H 0.063 0.937 19 C -0.119 4.119 20 C -0.097 4.097 21 C -0.172 4.172 22 H 0.119 0.881 23 C -0.149 4.149 24 C -0.163 4.163 25 H 0.127 0.873 26 C 0.167 3.833 27 H 0.249 0.751 28 H 0.062 0.938 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.413 0.587 34 H 0.119 0.881 35 H 0.111 0.889 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.113 0.887 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 -17.703 5.588 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.807 3.193 4 H -0.216 1.216 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.365 4.365 8 H 0.101 0.899 9 N -0.373 5.373 10 C -0.001 4.001 11 C -0.133 4.133 12 C 0.018 3.982 13 N -0.371 5.371 14 C 0.295 3.705 15 O -0.464 6.464 16 C -0.165 4.165 17 C -0.063 4.063 18 H 0.082 0.918 19 C -0.156 4.156 20 C -0.135 4.135 21 C -0.190 4.190 22 H 0.137 0.863 23 C -0.186 4.186 24 C -0.181 4.181 25 H 0.145 0.855 26 C 0.041 3.959 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.249 0.751 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.132 0.868 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.549 -17.881 4.953 22.399 hybrid contribution 0.443 1.518 -0.250 1.601 sum -12.106 -16.363 4.703 20.891 Atomic orbital electron populations 1.69995 1.06374 1.25605 1.58190 1.25640 0.96641 1.00874 1.03003 0.85068 0.77772 0.79060 0.77367 1.21606 1.21853 1.19201 1.19443 0.90873 0.83481 1.42698 0.89937 1.46434 1.03879 1.00696 1.86262 1.22697 0.95913 0.83560 0.97905 1.23392 0.96138 0.92971 1.00806 1.21116 0.84898 0.96885 0.95351 1.46030 1.21920 1.30476 1.38706 1.21309 0.86233 0.79627 0.83357 1.90659 1.75477 1.47212 1.33100 1.21735 0.92601 1.00666 1.01510 1.21239 0.94577 0.96583 0.93949 0.91819 1.22725 0.97151 0.99284 0.96464 1.21951 0.96653 0.98926 0.95924 1.23345 0.98703 1.06060 0.90935 0.86299 1.23104 1.02661 0.92228 1.00620 1.23301 0.94500 0.98761 1.01564 0.85548 1.22262 0.86864 0.90947 0.95791 0.94255 0.91992 0.93770 0.87699 0.91008 0.93374 0.75067 0.86247 0.87105 0.91666 0.92841 0.90742 0.92014 0.86837 0.89574 0.97268 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.33 11.39 21.65 0.25 -57.09 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 7 C -0.24 -13.37 10.70 84.04 0.90 -12.47 16 8 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 9 N -0.65 -33.19 3.70 -716.07 -2.65 -35.84 16 10 C 0.12 4.88 8.51 86.49 0.74 5.61 16 11 C -0.11 -3.89 3.93 -10.13 -0.04 -3.93 16 12 C 0.14 4.25 5.51 86.38 0.48 4.72 16 13 N -0.72 -18.04 5.56 -463.07 -2.57 -20.61 16 14 C 0.51 13.08 7.63 87.66 0.67 13.75 16 15 O -0.58 -19.75 14.61 -3.03 -0.04 -19.80 16 16 C -0.13 -2.19 5.18 29.85 0.15 -2.03 16 17 C -0.04 -0.85 2.25 -9.72 -0.02 -0.88 16 18 H 0.06 1.45 7.96 -2.39 -0.02 1.44 16 19 C -0.12 -2.54 5.69 31.89 0.18 -2.36 16 20 C -0.10 -1.71 6.63 31.67 0.21 -1.50 16 21 C -0.17 -2.56 6.95 -9.99 -0.07 -2.63 16 22 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 23 C -0.15 -2.00 10.06 30.55 0.31 -1.69 16 24 C -0.16 -2.40 6.37 -10.04 -0.06 -2.46 16 25 H 0.13 1.47 8.05 -2.39 -0.02 1.45 16 26 C 0.17 7.73 7.08 86.45 0.61 8.34 16 27 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.04 1.68 8.10 -2.38 -0.02 1.66 16 30 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 31 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.64 7.88 -2.38 -0.02 1.62 16 33 H 0.41 8.50 8.47 -92.71 -0.79 7.71 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.62 8.06 -2.39 -0.02 1.60 16 36 H 0.06 1.37 8.00 -2.39 -0.02 1.35 16 37 H 0.05 1.43 7.17 -2.39 -0.02 1.41 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.01 0.47 7.92 -2.39 -0.02 0.45 16 43 H 0.05 2.35 7.17 -2.39 -0.02 2.33 16 Total: -1.00 -70.62 346.30 1.72 -68.90 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.20 Total: 17.61 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 4.52 Total: -0.97 kcal Atomic # 7 Polarization: -108.56 SS G_CDS: -4.98 Total: -113.54 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.04 Total: -19.80 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -70.62 1.72 -68.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692315298.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.020 kcal (2) G-P(sol) polarization free energy of solvation -70.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds