Wall clock time and date at job start Mon Mar 30 2020 23:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00301 * 3 2 1 5 5 H 1.48499 * 109.47271 * 29.99997 * 3 2 1 6 6 H 1.48500 * 109.47347 * 150.00172 * 3 2 1 7 7 C 1.38814 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00313 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99450 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99826 * 175.17608 * 9 7 2 11 11 C 1.53005 * 110.81751 * 301.12936 * 10 9 7 12 12 N 1.46496 * 109.47008 * 301.81505 * 11 10 9 13 13 C 1.34773 * 120.00323 * 184.64397 * 12 11 10 14 14 O 1.21615 * 119.99875 * 359.97438 * 13 12 11 15 15 C 1.47103 * 120.00304 * 179.97438 * 13 12 11 16 16 C 1.32613 * 124.61714 * 179.69881 * 15 13 12 17 17 C 1.51111 * 110.75538 * 179.84672 * 16 15 13 18 18 C 1.54578 * 104.90102 * 343.80459 * 17 16 15 19 19 C 1.51106 * 124.62155 * 0.02562 * 15 13 12 20 20 C 1.54890 * 110.75810 * 177.79118 * 10 9 7 21 21 C 1.54261 * 104.19610 * 279.62851 * 20 10 9 22 22 C 1.53876 * 106.60137 * 336.38958 * 21 20 10 23 23 C 1.54262 * 106.59556 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00085 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00363 * 355.16776 * 9 7 2 26 26 H 1.09006 * 109.46961 * 61.80986 * 11 10 9 27 27 H 1.08993 * 109.47077 * 181.81143 * 11 10 9 28 28 H 0.97006 * 119.99869 * 4.64122 * 12 11 10 29 29 H 1.08001 * 124.62141 * 0.02562 * 16 15 13 30 30 H 1.09000 * 110.51945 * 224.85339 * 17 16 15 31 31 H 1.09002 * 110.24997 * 102.61813 * 17 16 15 32 32 H 1.09008 * 110.98424 * 266.70935 * 18 17 16 33 33 H 1.09002 * 110.98588 * 142.91473 * 18 17 16 34 34 H 1.09001 * 110.36478 * 315.43974 * 19 15 13 35 35 H 1.09003 * 110.36862 * 77.75356 * 19 15 13 36 36 H 1.08997 * 110.48617 * 160.94832 * 20 10 9 37 37 H 1.09000 * 110.48475 * 38.30764 * 20 10 9 38 38 H 1.09000 * 110.03503 * 95.67389 * 21 20 10 39 39 H 1.09002 * 110.03131 * 217.10530 * 21 20 10 40 40 H 1.08997 * 110.03238 * 119.28676 * 22 21 20 41 41 H 1.09001 * 110.02965 * 240.71829 * 22 21 20 42 42 H 1.09003 * 110.48743 * 142.29016 * 23 22 21 43 43 H 1.08998 * 110.49317 * 264.93201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4663 0.1083 11 6 3.7432 -3.2007 1.3989 12 7 4.0390 -2.3440 2.5499 13 6 3.8818 -2.8187 3.8014 14 8 3.4939 -3.9581 3.9753 15 6 4.1795 -1.9587 4.9571 16 6 4.0520 -2.3286 6.2242 17 6 4.4453 -1.2033 7.1528 18 6 5.2311 -0.2115 6.2650 19 6 4.6654 -0.5310 4.8623 20 6 5.6400 -2.2237 0.0324 21 6 5.9243 -2.0713 -1.4761 22 6 4.7839 -2.7946 -2.2137 23 6 3.8467 -3.3618 -1.1276 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3651 -0.0697 26 1 2.6800 -3.4413 1.3889 27 1 4.3232 -4.1206 1.4720 28 1 4.3482 -1.4351 2.4112 29 1 3.7159 -3.3025 6.5482 30 1 5.0788 -1.5759 7.9577 31 1 3.5561 -0.7236 7.5620 32 1 6.3017 -0.4117 6.3094 33 1 5.0164 0.8193 6.5467 34 1 5.4488 -0.4462 4.1091 35 1 3.8370 0.1368 4.6260 36 1 6.1825 -3.0774 0.4385 37 1 5.9083 -1.3115 0.5652 38 1 5.9355 -1.0161 -1.7493 39 1 6.8806 -2.5318 -1.7242 40 1 4.2416 -2.0904 -2.8448 41 1 5.1868 -3.6061 -2.8197 42 1 2.8059 -3.2799 -1.4411 43 1 4.0997 -4.3993 -0.9092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698796762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:42 Heat of formation + Delta-G solvation = -24.664460 kcal Electronic energy + Delta-G solvation = -22533.086760 eV Core-core repulsion = 19384.806071 eV Total energy + Delta-G solvation = -3148.280689 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.74351 -38.53319 -37.35314 -34.11742 -33.27807 -30.94672 -29.60217 -28.67519 -28.33943 -27.84647 -24.48488 -23.15029 -21.74632 -20.68103 -19.87540 -19.03875 -18.12180 -17.61726 -16.99386 -15.86108 -15.51155 -15.13652 -14.73332 -14.45518 -14.32108 -14.05182 -13.32359 -12.96487 -12.78343 -12.63597 -12.53248 -12.13665 -11.97033 -11.72622 -11.62944 -11.28279 -11.23669 -11.19819 -10.95916 -10.81840 -10.72904 -10.57610 -10.32190 -10.04546 -9.92992 -9.56665 -9.51768 -8.94389 -8.89755 -8.39936 -7.33662 -5.79699 -3.16637 1.58107 3.29693 3.33555 3.40691 3.63668 3.77340 4.50997 4.53944 4.60452 4.91692 5.01530 5.03876 5.05743 5.17142 5.29758 5.33938 5.55186 5.59522 5.67124 5.71828 5.75148 5.79204 5.82282 5.90631 5.93811 6.03648 6.11973 6.15596 6.16697 6.26608 6.34022 6.43163 6.48876 6.59193 6.62795 6.67255 6.74696 6.95046 7.05447 7.95720 8.06373 8.38922 8.70181 9.16043 9.87782 10.06825 11.38378 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.006484 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.092980 B = 4317.514471 C = 5287.467531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.733 5.733 10 C 0.193 3.807 11 C 0.121 3.879 12 N -0.697 5.697 13 C 0.559 3.441 14 O -0.557 6.557 15 C -0.180 4.180 16 C -0.089 4.089 17 C -0.104 4.104 18 C -0.122 4.122 19 C -0.094 4.094 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.129 4.129 24 H 0.259 0.741 25 H 0.361 0.639 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.400 0.600 29 H 0.136 0.864 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.079 0.921 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.938 -1.530 7.229 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.375 5.375 10 C 0.102 3.898 11 C -0.005 4.005 12 N -0.345 5.345 13 C 0.346 3.654 14 O -0.437 6.437 15 C -0.183 4.183 16 C -0.109 4.109 17 C -0.141 4.141 18 C -0.160 4.160 19 C -0.131 4.131 20 C -0.164 4.164 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.170 4.170 24 H 0.069 0.931 25 H 0.195 0.805 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.235 0.765 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.410 -2.369 7.310 15.456 hybrid contribution 0.492 1.751 -0.202 1.830 sum 13.903 -0.618 7.107 15.626 Atomic orbital electron populations 1.69695 1.05096 1.25705 1.57322 1.24646 0.95110 0.96961 1.02080 0.86634 0.79144 0.85444 0.77706 1.21258 1.21940 1.20373 1.18933 0.80339 0.94597 1.42815 0.89084 1.42653 1.03967 1.01760 1.89129 1.20700 0.89787 0.87674 0.91684 1.21758 1.01474 0.92205 0.85027 1.45654 1.66546 1.17226 1.05087 1.17924 0.77865 0.86526 0.83067 1.90745 1.47608 1.19231 1.86134 1.21928 1.05543 0.96589 0.94278 1.23938 0.94429 0.98778 0.93727 1.21441 1.00326 0.94562 0.97805 1.22420 0.99764 0.99339 0.94448 1.21278 1.00764 0.93129 0.97970 1.22607 0.96152 1.01236 0.96407 1.22053 0.97984 1.00386 0.95182 1.21961 0.96099 0.99058 0.97914 1.22729 1.00884 0.97555 0.95787 0.93103 0.80545 0.91089 0.92407 0.76475 0.84636 0.90558 0.89882 0.91007 0.90655 0.90939 0.89875 0.91295 0.92079 0.92286 0.92707 0.91780 0.93015 0.90275 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.06 27.69 -169.99 -4.71 16.35 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.06 6.59 56.52 0.37 -5.69 16 7 C -0.24 -6.19 9.11 -15.06 -0.14 -6.33 16 8 H 0.09 2.62 7.40 -52.49 -0.39 2.24 16 9 N -0.73 -15.51 4.56 -45.38 -0.21 -15.72 16 10 C 0.19 3.40 0.48 -129.81 -0.06 3.34 16 11 C 0.12 2.24 4.44 -4.04 -0.02 2.23 16 12 N -0.70 -12.41 5.25 -61.49 -0.32 -12.73 16 13 C 0.56 10.34 7.79 -12.67 -0.10 10.24 16 14 O -0.56 -12.05 16.76 5.26 0.09 -11.96 16 15 C -0.18 -2.71 6.09 -102.73 -0.63 -3.33 16 16 C -0.09 -1.16 10.43 -36.01 -0.38 -1.54 16 17 C -0.10 -1.02 6.80 -26.85 -0.18 -1.20 16 18 C -0.12 -1.18 7.17 -25.07 -0.18 -1.36 16 19 C -0.09 -1.17 6.02 -26.85 -0.16 -1.33 16 20 C -0.13 -1.82 5.50 -25.07 -0.14 -1.95 16 21 C -0.12 -1.62 6.78 -25.62 -0.17 -1.80 16 22 C -0.11 -1.68 6.78 -25.61 -0.17 -1.86 16 23 C -0.13 -2.18 5.86 -25.06 -0.15 -2.32 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 25 H 0.36 7.58 5.62 -40.82 -0.23 7.35 16 26 H 0.07 1.54 7.50 -51.93 -0.39 1.16 16 27 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 28 H 0.40 6.74 7.12 -40.82 -0.29 6.45 16 29 H 0.14 1.77 8.03 -52.49 -0.42 1.35 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.54 7.28 -51.93 -0.38 1.16 16 43 H 0.06 0.84 8.05 -51.93 -0.42 0.42 16 LS Contribution 342.45 15.07 5.16 5.16 Total: -1.00 -31.36 342.45 -8.93 -40.29 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -7.15 Total: 13.40 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.57 Total: -7.09 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.25 Total: -56.16 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.36 -8.93 -40.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698796762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.628 kcal (2) G-P(sol) polarization free energy of solvation -31.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds