Wall clock time and date at job start Mon Mar 30 2020 23:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86790 * 119.99960 * 2 1 4 4 H 1.48502 * 109.47154 * 270.00301 * 3 2 1 5 5 H 1.48499 * 109.47271 * 29.99997 * 3 2 1 6 6 H 1.48500 * 109.47347 * 150.00172 * 3 2 1 7 7 C 1.38814 * 119.99716 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00313 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99450 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99826 * 175.17608 * 9 7 2 11 11 C 1.53005 * 110.81751 * 301.12936 * 10 9 7 12 12 N 1.46496 * 109.47008 * 301.81505 * 11 10 9 13 13 C 1.34773 * 120.00323 * 184.64397 * 12 11 10 14 14 O 1.21615 * 119.99875 * 359.97438 * 13 12 11 15 15 C 1.47103 * 120.00304 * 179.97438 * 13 12 11 16 16 C 1.32613 * 124.61714 * 179.69881 * 15 13 12 17 17 C 1.51111 * 110.75538 * 179.84672 * 16 15 13 18 18 C 1.54578 * 104.90102 * 343.80459 * 17 16 15 19 19 C 1.51106 * 124.62155 * 0.02562 * 15 13 12 20 20 C 1.54890 * 110.75810 * 177.79118 * 10 9 7 21 21 C 1.54261 * 104.19610 * 279.62851 * 20 10 9 22 22 C 1.53876 * 106.60137 * 336.38958 * 21 20 10 23 23 C 1.54262 * 106.59556 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00085 * 359.97438 * 1 2 3 25 25 H 0.96998 * 120.00363 * 355.16776 * 9 7 2 26 26 H 1.09006 * 109.46961 * 61.80986 * 11 10 9 27 27 H 1.08993 * 109.47077 * 181.81143 * 11 10 9 28 28 H 0.97006 * 119.99869 * 4.64122 * 12 11 10 29 29 H 1.08001 * 124.62141 * 0.02562 * 16 15 13 30 30 H 1.09000 * 110.51945 * 224.85339 * 17 16 15 31 31 H 1.09002 * 110.24997 * 102.61813 * 17 16 15 32 32 H 1.09008 * 110.98424 * 266.70935 * 18 17 16 33 33 H 1.09002 * 110.98588 * 142.91473 * 18 17 16 34 34 H 1.09001 * 110.36478 * 315.43974 * 19 15 13 35 35 H 1.09003 * 110.36862 * 77.75356 * 19 15 13 36 36 H 1.08997 * 110.48617 * 160.94832 * 20 10 9 37 37 H 1.09000 * 110.48475 * 38.30764 * 20 10 9 38 38 H 1.09000 * 110.03503 * 95.67389 * 21 20 10 39 39 H 1.09002 * 110.03131 * 217.10530 * 21 20 10 40 40 H 1.08997 * 110.03238 * 119.28676 * 22 21 20 41 41 H 1.09001 * 110.02965 * 240.71829 * 22 21 20 42 42 H 1.09003 * 110.48743 * 142.29016 * 23 22 21 43 43 H 1.08998 * 110.49317 * 264.93201 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4663 0.1083 11 6 3.7432 -3.2007 1.3989 12 7 4.0390 -2.3440 2.5499 13 6 3.8818 -2.8187 3.8014 14 8 3.4939 -3.9581 3.9753 15 6 4.1795 -1.9587 4.9571 16 6 4.0520 -2.3286 6.2242 17 6 4.4453 -1.2033 7.1528 18 6 5.2311 -0.2115 6.2650 19 6 4.6654 -0.5310 4.8623 20 6 5.6400 -2.2237 0.0324 21 6 5.9243 -2.0713 -1.4761 22 6 4.7839 -2.7946 -2.2137 23 6 3.8467 -3.3618 -1.1276 24 1 -0.4850 0.8400 0.0004 25 1 3.8646 -0.3651 -0.0697 26 1 2.6800 -3.4413 1.3889 27 1 4.3232 -4.1206 1.4720 28 1 4.3482 -1.4351 2.4112 29 1 3.7159 -3.3025 6.5482 30 1 5.0788 -1.5759 7.9577 31 1 3.5561 -0.7236 7.5620 32 1 6.3017 -0.4117 6.3094 33 1 5.0164 0.8193 6.5467 34 1 5.4488 -0.4462 4.1091 35 1 3.8370 0.1368 4.6260 36 1 6.1825 -3.0774 0.4385 37 1 5.9083 -1.3115 0.5652 38 1 5.9355 -1.0161 -1.7493 39 1 6.8806 -2.5318 -1.7242 40 1 4.2416 -2.0904 -2.8448 41 1 5.1868 -3.6061 -2.8197 42 1 2.8059 -3.2799 -1.4411 43 1 4.0997 -4.3993 -0.9092 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698796762.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:55:41 Heat of formation + Delta-G solvation = -45.258926 kcal Electronic energy + Delta-G solvation = -22533.979803 eV Core-core repulsion = 19384.806071 eV Total energy + Delta-G solvation = -3149.173732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10485 -39.85108 -38.52603 -35.60271 -35.14759 -32.81032 -30.83856 -29.80745 -29.59063 -28.99180 -26.00891 -24.95737 -22.98288 -21.63512 -21.10355 -20.53560 -19.57095 -19.48586 -18.15392 -17.25665 -16.64137 -16.51966 -16.24501 -15.98545 -15.74278 -15.49429 -14.77333 -14.71383 -14.11290 -13.78092 -13.75115 -13.60158 -13.34240 -13.02987 -12.92952 -12.59004 -12.49227 -12.36193 -12.07041 -12.05692 -11.99813 -11.89746 -11.88433 -11.70987 -11.42866 -11.16542 -11.04332 -10.84039 -10.11388 -9.76676 -9.29683 -7.96584 -5.30793 0.40841 1.37517 1.42533 1.49764 2.25148 2.41212 2.51771 3.32826 3.49857 3.56193 3.65804 3.72502 3.87611 4.02685 4.12849 4.21410 4.32227 4.41295 4.55045 4.65747 4.70627 4.78476 4.81775 4.84292 4.88156 4.94801 4.97971 4.99584 5.08453 5.15724 5.17446 5.21075 5.35426 5.39198 5.40301 5.43836 5.53277 5.55915 5.66914 5.85120 6.26499 6.63679 7.13202 7.26343 7.86475 8.07436 9.25380 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.006484 C = 0.005294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.092980 B = 4317.514471 C = 5287.467531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.067 4.067 3 Si 0.951 3.049 4 H -0.284 1.284 5 H -0.305 1.305 6 H -0.238 1.238 7 C -0.207 4.207 8 H 0.048 0.952 9 N -0.728 5.728 10 C 0.185 3.815 11 C 0.128 3.872 12 N -0.693 5.693 13 C 0.550 3.450 14 O -0.600 6.600 15 C -0.215 4.215 16 C -0.072 4.072 17 C -0.101 4.101 18 C -0.114 4.114 19 C -0.093 4.093 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.130 4.130 24 H 0.254 0.746 25 H 0.368 0.632 26 H 0.024 0.976 27 H 0.071 0.929 28 H 0.407 0.593 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.952 -0.217 8.306 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.211 1.211 5 H -0.233 1.233 6 H -0.162 1.162 7 C -0.338 4.338 8 H 0.066 0.934 9 N -0.371 5.371 10 C 0.095 3.905 11 C 0.002 3.998 12 N -0.341 5.341 13 C 0.340 3.660 14 O -0.484 6.484 15 C -0.218 4.218 16 C -0.092 4.092 17 C -0.138 4.138 18 C -0.151 4.151 19 C -0.130 4.130 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.148 4.148 23 C -0.171 4.171 24 H 0.062 0.938 25 H 0.202 0.798 26 H 0.042 0.958 27 H 0.089 0.911 28 H 0.243 0.757 29 H 0.146 0.854 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 17.503 -1.065 8.382 19.436 hybrid contribution -0.819 1.132 -0.502 1.484 sum 16.684 0.066 7.881 18.452 Atomic orbital electron populations 1.69910 1.07430 1.26291 1.60386 1.25462 0.95909 1.01140 1.03199 0.85476 0.79116 0.79730 0.77849 1.21073 1.23268 1.16197 1.18739 0.82513 0.92720 1.39808 0.93413 1.42531 1.02091 1.03569 1.88888 1.20957 0.92264 0.86143 0.91142 1.21615 0.98808 0.93316 0.86065 1.45623 1.66255 1.17350 1.04853 1.18607 0.76833 0.86488 0.84074 1.90708 1.49689 1.21242 1.86759 1.21939 1.08492 0.97948 0.93407 1.24339 0.91419 0.99432 0.93985 1.21540 1.01298 0.93251 0.97688 1.22445 1.00391 1.00185 0.92089 1.21307 1.00596 0.90816 1.00307 1.22581 0.92585 1.02710 0.97549 1.22055 0.98592 1.00512 0.93944 1.21949 0.96018 0.99550 0.97253 1.22705 0.99258 0.98845 0.96242 0.93770 0.79795 0.95780 0.91083 0.75695 0.85352 0.87955 0.88743 0.89518 0.88898 0.90185 0.91143 0.89298 0.90908 0.92274 0.89613 0.93749 0.90525 0.94280 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.50 13.97 21.65 0.30 -63.20 16 2 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 3 Si 0.95 43.62 27.69 68.60 1.90 45.52 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 6 H -0.24 -9.26 6.59 99.48 0.66 -8.60 16 7 C -0.21 -11.22 9.11 84.03 0.77 -10.45 16 8 H 0.05 2.98 7.40 -2.91 -0.02 2.95 16 9 N -0.73 -30.62 4.56 -297.48 -1.36 -31.98 16 10 C 0.19 6.40 0.48 4.91 0.00 6.41 16 11 C 0.13 4.85 4.44 86.38 0.38 5.23 16 12 N -0.69 -24.71 5.25 -466.71 -2.45 -27.16 16 13 C 0.55 20.67 7.79 86.57 0.67 21.35 16 14 O -0.60 -26.93 16.76 -4.08 -0.07 -27.00 16 15 C -0.21 -6.27 6.09 -18.57 -0.11 -6.38 16 16 C -0.07 -1.77 10.43 24.66 0.26 -1.51 16 17 C -0.10 -1.63 6.80 30.52 0.21 -1.42 16 18 C -0.11 -1.75 7.17 31.67 0.23 -1.53 16 19 C -0.09 -2.10 6.02 30.52 0.18 -1.91 16 20 C -0.12 -2.96 5.50 31.67 0.17 -2.78 16 21 C -0.11 -2.66 6.78 31.32 0.21 -2.45 16 22 C -0.11 -3.06 6.78 31.32 0.21 -2.85 16 23 C -0.13 -4.38 5.86 31.68 0.19 -4.20 16 24 H 0.25 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.37 14.64 5.62 -92.71 -0.52 14.12 16 26 H 0.02 1.12 7.50 -2.38 -0.02 1.10 16 27 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 28 H 0.41 13.25 7.12 -92.70 -0.66 12.59 16 29 H 0.13 3.29 8.03 -2.91 -0.02 3.26 16 30 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.63 7.83 -2.39 -0.02 1.61 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.97 8.03 -2.39 -0.02 1.95 16 37 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.60 7.28 -2.39 -0.02 1.59 16 43 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 Total: -1.00 -73.39 342.45 1.93 -71.46 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.23 Total: 38.21 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 3.84 Total: -5.85 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -3.51 Total: -122.35 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.07 Total: -27.00 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.90 Total: 45.52 kcal Total: -73.39 1.93 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698796762.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.203 kcal (2) G-P(sol) polarization free energy of solvation -73.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds