Wall clock time and date at job start Tue Mar 31 2020 00:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00059 * 2 1 4 4 H 1.48496 * 109.47444 * 4.99568 * 3 2 1 5 5 H 1.48504 * 109.47437 * 124.99955 * 3 2 1 6 6 H 1.48504 * 109.47239 * 244.99265 * 3 2 1 7 7 C 1.38812 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00254 * 174.55501 * 7 2 1 9 9 N 1.36937 * 120.00535 * 354.55591 * 7 2 1 10 10 C 1.46495 * 120.00282 * 185.30022 * 9 7 2 11 11 C 1.53005 * 115.54807 * 64.66579 * 10 9 7 12 12 N 1.46493 * 109.47636 * 80.51127 * 11 10 9 13 13 C 1.34776 * 120.00557 * 184.16239 * 12 11 10 14 14 O 1.21279 * 119.99524 * 4.54013 * 13 12 11 15 15 C 1.50690 * 120.00359 * 184.54287 * 13 12 11 16 16 H 1.09002 * 110.05288 * 25.63044 * 15 13 12 17 17 C 1.54388 * 110.07231 * 147.11623 * 15 13 12 18 18 C 1.55011 * 104.18090 * 142.76123 * 17 15 13 19 19 C 1.54992 * 102.85309 * 322.33565 * 18 17 15 20 20 C 1.53478 * 110.07099 * 264.14554 * 15 13 12 21 21 C 1.52567 * 121.05701 * 96.54271 * 20 15 13 22 22 C 1.52550 * 121.08673 * 24.82806 * 20 15 13 23 23 C 1.52999 * 117.50034 * 278.98966 * 10 9 7 24 24 C 1.53001 * 117.49734 * 210.32618 * 10 9 7 25 25 H 0.97002 * 120.00100 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99238 * 5.30383 * 9 7 2 27 27 H 1.09001 * 109.46949 * 200.51426 * 11 10 9 28 28 H 1.08999 * 109.46628 * 320.51014 * 11 10 9 29 29 H 0.96999 * 119.99874 * 4.16442 * 12 11 10 30 30 H 1.08998 * 110.48571 * 261.48231 * 17 15 13 31 31 H 1.08997 * 110.47727 * 24.11436 * 17 15 13 32 32 H 1.08995 * 110.75553 * 203.98131 * 18 17 15 33 33 H 1.09001 * 110.70219 * 80.66899 * 18 17 15 34 34 H 1.08992 * 110.51617 * 278.89457 * 19 18 17 35 35 H 1.09002 * 110.62669 * 156.23678 * 19 18 17 36 36 H 1.09000 * 117.50980 * 356.98185 * 21 20 15 37 37 H 1.09004 * 117.51447 * 142.06369 * 21 20 15 38 38 H 1.09003 * 117.51271 * 217.88894 * 22 20 15 39 39 H 1.09001 * 117.50655 * 2.93847 * 22 20 15 40 40 H 1.08994 * 117.49892 * 0.02562 * 23 10 9 41 41 H 1.09003 * 117.49416 * 145.02285 * 23 10 9 42 42 H 1.09002 * 117.49781 * 214.97925 * 24 10 9 43 43 H 1.08997 * 117.50074 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2898 2.7438 0.1219 5 1 3.1931 1.6449 1.1469 6 1 3.0102 1.7504 -1.2688 7 6 2.0102 -1.2022 0.0005 8 1 3.0866 -1.2044 -0.0882 9 7 1.3302 -2.3854 0.1136 10 6 2.0676 -3.6457 0.2311 11 6 2.9127 -3.8003 1.4972 12 7 2.0528 -4.2055 2.6118 13 6 2.5671 -4.3214 3.8522 14 8 3.7207 -4.0113 4.0617 15 6 1.7089 -4.8363 4.9787 16 1 0.9136 -5.4685 4.5838 17 6 2.5717 -5.6339 5.9803 18 6 1.9734 -5.2772 7.3651 19 6 1.6158 -3.7771 7.2102 20 6 1.1077 -3.6615 5.7623 21 6 -0.3018 -3.1577 5.4671 22 6 0.9124 -2.2968 5.1091 23 6 2.6038 -4.2733 -1.0572 24 6 1.4097 -4.9048 -0.3371 25 1 -0.4850 0.8401 -0.0004 26 1 0.3602 -2.3889 0.1158 27 1 3.6772 -4.5597 1.3333 28 1 3.3900 -2.8493 1.7336 29 1 1.1133 -4.3905 2.4572 30 1 2.4854 -6.7038 5.7906 31 1 3.6133 -5.3181 5.9223 32 1 2.7128 -5.4184 8.1533 33 1 1.0794 -5.8688 7.5625 34 1 2.5001 -3.1567 7.3553 35 1 0.8324 -3.4945 7.9135 36 1 -0.8438 -3.6296 4.6476 37 1 -0.9112 -2.8415 6.3139 38 1 1.1017 -1.4143 5.7203 39 1 1.1696 -2.2022 4.0541 40 1 2.4083 -3.7481 -1.9921 41 1 3.5585 -4.7965 -1.0026 42 1 1.5793 -5.8432 0.1908 43 1 0.4279 -4.7954 -0.7979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699654545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:08 Heat of formation + Delta-G solvation = 13.053031 kcal Electronic energy + Delta-G solvation = -22403.775528 eV Core-core repulsion = 19257.130391 eV Total energy + Delta-G solvation = -3146.645136 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26478 -38.18607 -37.18395 -34.19661 -33.55923 -32.99723 -29.73999 -29.52785 -26.56836 -25.37094 -23.89045 -22.33441 -21.99556 -21.12988 -20.26280 -19.35928 -18.40719 -17.10648 -16.76366 -15.94418 -15.53291 -15.28315 -14.74363 -14.59122 -14.22002 -13.73945 -13.71006 -13.19819 -13.06113 -12.77144 -12.45374 -12.09308 -11.91803 -11.55378 -11.31882 -11.11453 -11.02893 -10.97800 -10.85775 -10.83596 -10.63472 -10.30958 -10.23988 -10.12317 -9.92448 -9.76192 -9.42706 -9.20142 -8.82588 -8.53853 -7.07037 -5.84239 -3.13681 2.97944 3.41927 3.45589 3.47050 3.49059 3.93696 4.37797 4.44066 4.58951 4.62274 4.88897 4.94413 5.11341 5.20843 5.23316 5.28883 5.33872 5.41021 5.44666 5.57699 5.63113 5.74267 5.79723 5.80581 5.82811 5.90206 5.98008 6.05866 6.07495 6.17741 6.18965 6.27509 6.32397 6.39448 6.41921 6.56185 6.69521 6.75890 6.92281 7.69601 7.94641 8.34201 8.62928 9.45708 9.98999 10.34486 11.37577 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.005514 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.424114 B = 5076.884995 C = 6008.130754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.688 5.688 10 C 0.130 3.870 11 C 0.147 3.853 12 N -0.712 5.712 13 C 0.519 3.481 14 O -0.546 6.546 15 C -0.076 4.076 16 H 0.088 0.912 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.164 4.164 22 C -0.165 4.165 23 C -0.189 4.189 24 C -0.187 4.187 25 H 0.256 0.744 26 H 0.387 0.613 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.398 0.602 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 -12.404 10.942 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.735 3.265 4 H -0.217 1.217 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.327 5.327 10 C 0.036 3.964 11 C 0.021 3.979 12 N -0.362 5.362 13 C 0.305 3.695 14 O -0.424 6.424 15 C -0.097 4.097 16 H 0.106 0.894 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.201 4.201 22 C -0.202 4.202 23 C -0.230 4.230 24 C -0.225 4.225 25 H 0.066 0.934 26 H 0.222 0.778 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.232 0.768 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.958 -11.995 11.066 16.348 hybrid contribution -0.427 0.972 -0.318 1.108 sum 0.532 -11.023 10.747 15.405 Atomic orbital electron populations 1.69653 1.05116 1.25954 1.57002 1.24730 0.95468 0.97643 1.02443 0.86304 0.78681 0.83483 0.78002 1.21668 1.21031 1.21241 1.19104 0.91561 0.83628 1.42691 0.91070 1.41757 1.05079 0.99253 1.86613 1.20167 0.97857 0.86895 0.91503 1.21228 0.91760 1.00115 0.84777 1.45991 1.13506 1.68937 1.07749 1.20401 0.87911 0.77874 0.83337 1.90645 1.18577 1.49979 1.83173 1.21400 0.97657 0.96352 0.94315 0.89408 1.22357 1.00475 0.98722 0.93284 1.22449 1.00368 0.95932 0.96881 1.21857 1.00581 0.96715 0.93151 1.21513 0.99504 0.95306 0.95949 1.23012 0.90110 1.03816 1.03161 1.23066 1.01373 0.93263 1.02472 1.23377 0.96476 1.04327 0.98801 1.23076 0.98013 0.96269 1.05145 0.93380 0.77787 0.92740 0.90310 0.76817 0.91465 0.89597 0.91371 0.91475 0.91033 0.91605 0.88653 0.88773 0.88785 0.87569 0.88666 0.89953 0.89499 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.19 13.07 55.49 0.73 -26.47 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.90 22.33 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.44 9.52 -15.06 -0.14 -6.58 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.69 -16.32 5.50 -47.23 -0.26 -16.58 16 10 C 0.13 2.47 2.17 -131.82 -0.29 2.18 16 11 C 0.15 2.71 5.74 -4.04 -0.02 2.69 16 12 N -0.71 -11.58 5.23 -60.30 -0.32 -11.90 16 13 C 0.52 8.62 5.58 -10.99 -0.06 8.55 16 14 O -0.55 -11.07 15.77 5.56 0.09 -10.98 16 15 C -0.08 -0.98 3.15 -90.80 -0.29 -1.27 16 16 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 17 C -0.11 -1.28 6.34 -24.94 -0.16 -1.44 16 18 C -0.12 -1.16 6.91 -24.62 -0.17 -1.33 16 19 C -0.09 -0.96 6.58 -25.22 -0.17 -1.13 16 20 C -0.12 -1.58 2.26 -154.25 -0.35 -1.93 16 21 C -0.16 -2.03 10.23 -26.91 -0.28 -2.30 16 22 C -0.16 -2.51 9.63 -26.92 -0.26 -2.77 16 23 C -0.19 -3.24 10.11 -26.69 -0.27 -3.51 16 24 C -0.19 -2.92 10.06 -26.69 -0.27 -3.19 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.39 9.77 8.04 -40.82 -0.33 9.44 16 27 H 0.05 0.94 7.94 -51.93 -0.41 0.53 16 28 H 0.08 1.73 7.74 -51.93 -0.40 1.33 16 29 H 0.40 5.86 8.41 -40.82 -0.34 5.51 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.18 6.92 -51.93 -0.36 0.82 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.11 1.96 7.07 -51.93 -0.37 1.59 16 40 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 41 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 42 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -30.34 352.25 -9.54 -39.88 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -7.25 Total: 15.73 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.81 Total: -12.31 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: 0.15 Total: -54.94 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.34 -9.54 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699654545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.935 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds