Wall clock time and date at job start Tue Mar 31 2020 00:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86794 * 120.00059 * 2 1 4 4 H 1.48496 * 109.47444 * 4.99568 * 3 2 1 5 5 H 1.48504 * 109.47437 * 124.99955 * 3 2 1 6 6 H 1.48504 * 109.47239 * 244.99265 * 3 2 1 7 7 C 1.38812 * 119.99851 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00254 * 174.55501 * 7 2 1 9 9 N 1.36937 * 120.00535 * 354.55591 * 7 2 1 10 10 C 1.46495 * 120.00282 * 185.30022 * 9 7 2 11 11 C 1.53005 * 115.54807 * 64.66579 * 10 9 7 12 12 N 1.46493 * 109.47636 * 80.51127 * 11 10 9 13 13 C 1.34776 * 120.00557 * 184.16239 * 12 11 10 14 14 O 1.21279 * 119.99524 * 4.54013 * 13 12 11 15 15 C 1.50690 * 120.00359 * 184.54287 * 13 12 11 16 16 H 1.09002 * 110.05288 * 25.63044 * 15 13 12 17 17 C 1.54388 * 110.07231 * 147.11623 * 15 13 12 18 18 C 1.55011 * 104.18090 * 142.76123 * 17 15 13 19 19 C 1.54992 * 102.85309 * 322.33565 * 18 17 15 20 20 C 1.53478 * 110.07099 * 264.14554 * 15 13 12 21 21 C 1.52567 * 121.05701 * 96.54271 * 20 15 13 22 22 C 1.52550 * 121.08673 * 24.82806 * 20 15 13 23 23 C 1.52999 * 117.50034 * 278.98966 * 10 9 7 24 24 C 1.53001 * 117.49734 * 210.32618 * 10 9 7 25 25 H 0.97002 * 120.00100 * 0.02562 * 1 2 3 26 26 H 0.96999 * 119.99238 * 5.30383 * 9 7 2 27 27 H 1.09001 * 109.46949 * 200.51426 * 11 10 9 28 28 H 1.08999 * 109.46628 * 320.51014 * 11 10 9 29 29 H 0.96999 * 119.99874 * 4.16442 * 12 11 10 30 30 H 1.08998 * 110.48571 * 261.48231 * 17 15 13 31 31 H 1.08997 * 110.47727 * 24.11436 * 17 15 13 32 32 H 1.08995 * 110.75553 * 203.98131 * 18 17 15 33 33 H 1.09001 * 110.70219 * 80.66899 * 18 17 15 34 34 H 1.08992 * 110.51617 * 278.89457 * 19 18 17 35 35 H 1.09002 * 110.62669 * 156.23678 * 19 18 17 36 36 H 1.09000 * 117.50980 * 356.98185 * 21 20 15 37 37 H 1.09004 * 117.51447 * 142.06369 * 21 20 15 38 38 H 1.09003 * 117.51271 * 217.88894 * 22 20 15 39 39 H 1.09001 * 117.50655 * 2.93847 * 22 20 15 40 40 H 1.08994 * 117.49892 * 0.02562 * 23 10 9 41 41 H 1.09003 * 117.49416 * 145.02285 * 23 10 9 42 42 H 1.09002 * 117.49781 * 214.97925 * 24 10 9 43 43 H 1.08997 * 117.50074 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 1.2898 2.7438 0.1219 5 1 3.1931 1.6449 1.1469 6 1 3.0102 1.7504 -1.2688 7 6 2.0102 -1.2022 0.0005 8 1 3.0866 -1.2044 -0.0882 9 7 1.3302 -2.3854 0.1136 10 6 2.0676 -3.6457 0.2311 11 6 2.9127 -3.8003 1.4972 12 7 2.0528 -4.2055 2.6118 13 6 2.5671 -4.3214 3.8522 14 8 3.7207 -4.0113 4.0617 15 6 1.7089 -4.8363 4.9787 16 1 0.9136 -5.4685 4.5838 17 6 2.5717 -5.6339 5.9803 18 6 1.9734 -5.2772 7.3651 19 6 1.6158 -3.7771 7.2102 20 6 1.1077 -3.6615 5.7623 21 6 -0.3018 -3.1577 5.4671 22 6 0.9124 -2.2968 5.1091 23 6 2.6038 -4.2733 -1.0572 24 6 1.4097 -4.9048 -0.3371 25 1 -0.4850 0.8401 -0.0004 26 1 0.3602 -2.3889 0.1158 27 1 3.6772 -4.5597 1.3333 28 1 3.3900 -2.8493 1.7336 29 1 1.1133 -4.3905 2.4572 30 1 2.4854 -6.7038 5.7906 31 1 3.6133 -5.3181 5.9223 32 1 2.7128 -5.4184 8.1533 33 1 1.0794 -5.8688 7.5625 34 1 2.5001 -3.1567 7.3553 35 1 0.8324 -3.4945 7.9135 36 1 -0.8438 -3.6296 4.6476 37 1 -0.9112 -2.8415 6.3139 38 1 1.1017 -1.4143 5.7203 39 1 1.1696 -2.2022 4.0541 40 1 2.4083 -3.7481 -1.9921 41 1 3.5585 -4.7965 -1.0026 42 1 1.5793 -5.8432 0.1908 43 1 0.4279 -4.7954 -0.7979 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699654545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:07 Heat of formation + Delta-G solvation = -5.868576 kcal Electronic energy + Delta-G solvation = -22404.596030 eV Core-core repulsion = 19257.130391 eV Total energy + Delta-G solvation = -3147.465639 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46981 -39.51502 -38.58092 -35.40779 -35.02977 -34.69880 -31.66319 -30.62798 -27.83977 -26.44629 -25.93199 -23.46751 -23.31751 -22.22160 -21.36631 -20.82062 -19.68017 -19.13116 -18.01438 -17.31614 -16.74616 -16.67573 -16.05343 -15.98107 -15.69303 -15.31805 -14.99720 -14.89140 -14.36716 -13.89510 -13.66729 -13.45955 -13.40673 -13.00773 -12.82890 -12.53512 -12.43000 -12.32195 -12.26321 -11.95691 -11.87840 -11.80731 -11.74398 -11.50500 -11.19909 -11.15911 -10.97857 -10.70291 -10.37029 -10.00219 -9.03694 -7.98869 -5.25882 1.41853 1.44302 1.49866 1.66284 2.18472 2.50040 2.81788 3.09735 3.36595 3.40084 3.63431 3.65753 3.82496 3.87193 3.90274 4.07804 4.17655 4.27694 4.30867 4.35047 4.48371 4.68790 4.75719 4.77428 4.79116 4.81234 4.91719 4.92735 5.01299 5.03227 5.07551 5.16486 5.19029 5.19623 5.20743 5.28073 5.37171 5.46905 5.52109 5.55810 6.24625 6.63688 7.30673 7.31557 8.04745 8.28485 9.23314 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.005514 C = 0.004659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.424114 B = 5076.884995 C = 6008.130754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.063 4.063 3 Si 0.958 3.042 4 H -0.292 1.292 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.232 4.232 8 H 0.065 0.935 9 N -0.696 5.696 10 C 0.099 3.901 11 C 0.159 3.841 12 N -0.705 5.705 13 C 0.515 3.485 14 O -0.589 6.589 15 C -0.074 4.074 16 H 0.116 0.884 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.088 4.088 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.201 4.201 23 C -0.186 4.186 24 C -0.151 4.151 25 H 0.251 0.749 26 H 0.377 0.623 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.407 0.593 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -14.917 12.053 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.256 4.256 3 Si 0.788 3.212 4 H -0.218 1.218 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.364 4.364 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.006 3.994 11 C 0.033 3.967 12 N -0.355 5.355 13 C 0.303 3.697 14 O -0.470 6.470 15 C -0.095 4.095 16 H 0.134 0.866 17 C -0.149 4.149 18 C -0.146 4.146 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.177 4.177 22 C -0.238 4.238 23 C -0.226 4.226 24 C -0.189 4.189 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.243 0.757 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.139 0.861 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.253 -14.552 12.165 18.969 hybrid contribution -0.138 1.702 -0.693 1.843 sum 0.115 -12.850 11.472 17.226 Atomic orbital electron populations 1.69768 1.06131 1.25998 1.59131 1.25352 0.96226 1.00302 1.03699 0.85443 0.77473 0.80379 0.77915 1.21821 1.21419 1.20433 1.19322 0.91425 0.85081 1.40531 0.91653 1.41765 1.04707 1.00216 1.86788 1.20357 0.99847 0.86711 0.92452 1.20933 0.92168 0.98348 0.85223 1.45949 1.13713 1.68405 1.07432 1.21135 0.87739 0.76851 0.83956 1.90623 1.20725 1.51866 1.83794 1.21535 0.97961 0.96801 0.93188 0.86611 1.22381 0.98654 0.99749 0.94078 1.22452 1.01536 0.94686 0.95932 1.21920 1.00497 0.97892 0.92239 1.21660 0.99885 0.93378 0.96757 1.23112 0.89494 1.01352 1.03734 1.22920 1.05548 0.94985 1.00335 1.23388 0.98532 1.03960 0.96721 1.23163 0.97383 0.95458 1.02858 0.93998 0.78937 0.91149 0.94914 0.75723 0.89123 0.92375 0.90134 0.89120 0.92747 0.89582 0.87995 0.86543 0.89236 0.91580 0.90315 0.87561 0.86139 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.62 13.07 21.65 0.28 -57.34 16 2 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 3 Si 0.96 47.12 29.56 68.60 2.03 49.15 16 4 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 5 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 7 C -0.23 -12.81 9.52 84.03 0.80 -12.01 16 8 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 9 N -0.70 -33.67 5.50 -303.34 -1.67 -35.34 16 10 C 0.10 3.69 2.17 3.61 0.01 3.70 16 11 C 0.16 5.93 5.74 86.38 0.50 6.43 16 12 N -0.71 -22.77 5.23 -463.08 -2.42 -25.19 16 13 C 0.52 17.10 5.58 87.65 0.49 17.59 16 14 O -0.59 -24.64 15.77 -3.03 -0.05 -24.69 16 15 C -0.07 -1.78 3.15 -10.91 -0.03 -1.81 16 16 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 17 C -0.11 -2.31 6.34 31.75 0.20 -2.11 16 18 C -0.11 -1.76 6.91 31.96 0.22 -1.54 16 19 C -0.09 -1.79 6.58 31.57 0.21 -1.59 16 20 C -0.12 -2.85 2.26 -52.02 -0.12 -2.97 16 21 C -0.14 -3.20 10.23 30.48 0.31 -2.88 16 22 C -0.20 -6.27 9.63 30.47 0.29 -5.98 16 23 C -0.19 -6.05 10.11 30.62 0.31 -5.74 16 24 C -0.15 -4.31 10.06 30.62 0.31 -4.00 16 25 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 26 H 0.38 19.44 8.04 -92.71 -0.75 18.69 16 27 H 0.07 2.38 7.94 -2.39 -0.02 2.36 16 28 H 0.03 1.51 7.74 -2.39 -0.02 1.49 16 29 H 0.41 11.55 8.41 -92.71 -0.78 10.77 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.56 6.92 -2.39 -0.02 1.54 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.41 8.11 -2.39 -0.02 1.39 16 36 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.12 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.07 2.60 7.07 -2.39 -0.02 2.58 16 40 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.11 2.95 8.08 -2.39 -0.02 2.93 16 42 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.09 2.69 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -68.94 352.25 1.61 -67.33 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.52 Total: 42.12 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: 3.96 Total: -16.05 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.81 Total: -117.86 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -68.94 1.61 -67.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699654545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.462 kcal (2) G-P(sol) polarization free energy of solvation -68.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds