Wall clock time and date at job start Tue Mar 31 2020 00:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99275 * 2 1 4 4 H 1.48504 * 109.47082 * 245.00048 * 3 2 1 5 5 H 1.48501 * 109.47669 * 5.00114 * 3 2 1 6 6 H 1.48500 * 109.47154 * 125.00284 * 3 2 1 7 7 C 1.38810 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99498 * 185.15316 * 7 2 1 9 9 N 1.36933 * 119.99939 * 5.15478 * 7 2 1 10 10 C 1.46501 * 119.99939 * 184.66619 * 9 7 2 11 11 C 1.53002 * 115.54929 * 294.73455 * 10 9 7 12 12 N 1.46496 * 109.46885 * 276.32671 * 11 10 9 13 13 C 1.34777 * 119.99597 * 184.98799 * 12 11 10 14 14 O 1.21276 * 120.00563 * 4.55908 * 13 12 11 15 15 C 1.50708 * 119.99823 * 184.55752 * 13 12 11 16 16 H 1.08994 * 110.09568 * 328.82202 * 15 13 12 17 17 C 1.54377 * 110.07061 * 207.30305 * 15 13 12 18 18 C 1.54925 * 104.22516 * 217.20620 * 17 15 13 19 19 C 1.54989 * 102.82037 * 37.71999 * 18 17 15 20 20 C 1.53483 * 110.06907 * 90.33437 * 15 13 12 21 21 C 1.52558 * 121.08084 * 335.18616 * 20 15 13 22 22 C 1.52562 * 121.05797 * 263.47300 * 20 15 13 23 23 C 1.53007 * 117.51728 * 80.43251 * 10 9 7 24 24 C 1.52998 * 117.49952 * 149.06048 * 10 9 7 25 25 H 0.96997 * 120.00780 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00462 * 4.66741 * 9 7 2 27 27 H 1.09001 * 109.47089 * 156.33089 * 11 10 9 28 28 H 1.08997 * 109.46991 * 36.33180 * 11 10 9 29 29 H 0.96997 * 120.00471 * 4.98947 * 12 11 10 30 30 H 1.09006 * 110.48526 * 335.89158 * 17 15 13 31 31 H 1.09006 * 110.48020 * 98.52082 * 17 15 13 32 32 H 1.08996 * 110.74540 * 156.05793 * 18 17 15 33 33 H 1.09003 * 110.74145 * 279.39429 * 18 17 15 34 34 H 1.08997 * 110.51312 * 203.79469 * 19 18 17 35 35 H 1.09003 * 110.62567 * 81.13764 * 19 18 17 36 36 H 1.09003 * 117.51255 * 357.02316 * 21 20 15 37 37 H 1.09006 * 117.50860 * 142.10433 * 21 20 15 38 38 H 1.09004 * 117.51165 * 217.92699 * 22 20 15 39 39 H 1.09003 * 117.51449 * 3.02070 * 22 20 15 40 40 H 1.08992 * 117.49819 * 214.97239 * 23 10 9 41 41 H 1.09004 * 117.49637 * 359.97438 * 23 10 9 42 42 H 1.09001 * 117.50068 * 359.97438 * 24 10 9 43 43 H 1.08995 * 117.49865 * 144.99896 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.0099 1.7508 -1.2689 5 1 1.2896 2.7439 0.1220 6 1 3.1930 1.6451 1.1468 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2039 0.0835 9 7 1.3298 -2.3856 -0.1076 10 6 2.0507 -3.6568 -0.0056 11 6 3.0563 -3.9368 -1.1242 12 7 2.3573 -4.5101 -2.2769 13 6 3.0579 -4.9319 -3.3483 14 8 4.2703 -4.9137 -3.3256 15 6 2.3345 -5.4262 -4.5746 16 1 1.3903 -5.8907 -4.2906 17 6 3.2153 -6.4394 -5.3368 18 6 2.9317 -6.1422 -6.8306 19 6 2.8036 -4.5978 -6.8557 20 6 2.0790 -4.2613 -5.5407 21 6 2.0006 -2.8233 -5.0373 22 6 0.7419 -3.5267 -5.5516 23 6 2.3942 -4.1641 1.3965 24 6 1.2966 -4.8515 0.5818 25 1 -0.4851 0.8399 0.0004 26 1 0.3705 -2.3822 -0.2510 27 1 3.8087 -4.6408 -0.7686 28 1 3.5404 -3.0058 -1.4190 29 1 1.3904 -4.5862 -2.2692 30 1 4.2687 -6.2764 -5.1088 31 1 2.9240 -7.4601 -5.0890 32 1 3.7630 -6.4708 -7.4542 33 1 2.0006 -6.6119 -7.1476 34 1 2.2097 -4.2777 -7.7118 35 1 3.7884 -4.1312 -6.8793 36 1 2.0831 -2.6608 -3.9626 37 1 2.4351 -2.0456 -5.6654 38 1 0.3484 -3.2115 -6.5180 39 1 -0.0036 -3.8268 -4.8151 40 1 3.3365 -4.6973 1.5219 41 1 2.0842 -3.5517 2.2432 42 1 0.2642 -4.6915 0.8927 43 1 1.5168 -5.8368 0.1713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699654546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:10 Heat of formation + Delta-G solvation = 13.185699 kcal Electronic energy + Delta-G solvation = -22358.109538 eV Core-core repulsion = 19211.470155 eV Total energy + Delta-G solvation = -3146.639383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.31131 -38.20564 -37.21060 -34.25911 -33.56057 -32.99647 -29.75419 -29.54892 -26.59867 -25.39083 -23.90026 -22.37114 -21.98379 -21.13930 -20.26769 -19.39978 -18.42364 -17.12537 -16.75627 -16.00181 -15.58253 -15.34037 -14.75876 -14.50739 -14.28964 -13.83470 -13.67422 -13.21786 -13.07974 -12.77052 -12.46793 -12.12859 -11.92924 -11.56650 -11.35541 -11.12633 -11.04880 -10.95777 -10.87481 -10.83777 -10.64592 -10.31132 -10.29331 -10.15387 -9.97364 -9.71144 -9.44656 -9.22952 -8.82885 -8.58417 -7.08434 -5.84582 -3.14876 2.92909 3.41128 3.43129 3.46116 3.47154 3.90081 4.35917 4.43395 4.57058 4.61113 4.85779 4.92031 5.08688 5.19582 5.21938 5.27307 5.32427 5.39453 5.46785 5.55677 5.64051 5.72326 5.78288 5.78556 5.81951 5.87678 5.96744 6.04062 6.08970 6.13802 6.16082 6.25990 6.30840 6.36236 6.43077 6.57038 6.66312 6.77879 6.88351 7.68024 7.90741 8.33461 8.57858 9.44488 9.97974 10.33563 11.36999 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.005272 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.569622 B = 5309.351381 C = 6235.521539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.688 5.688 10 C 0.128 3.872 11 C 0.147 3.853 12 N -0.713 5.713 13 C 0.519 3.481 14 O -0.548 6.548 15 C -0.076 4.076 16 H 0.089 0.911 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.086 4.086 20 C -0.122 4.122 21 C -0.167 4.167 22 C -0.163 4.163 23 C -0.187 4.187 24 C -0.186 4.186 25 H 0.256 0.744 26 H 0.387 0.613 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.399 0.601 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.547 -12.819 -10.659 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.328 5.328 10 C 0.034 3.966 11 C 0.021 3.979 12 N -0.363 5.363 13 C 0.305 3.695 14 O -0.426 6.426 15 C -0.098 4.098 16 H 0.107 0.893 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.204 4.204 22 C -0.200 4.200 23 C -0.228 4.228 24 C -0.224 4.224 25 H 0.066 0.934 26 H 0.222 0.778 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.233 0.767 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.508 -12.590 -10.598 16.647 hybrid contribution -0.470 1.071 0.178 1.183 sum 2.038 -11.520 -10.420 15.666 Atomic orbital electron populations 1.69661 1.05111 1.25946 1.57092 1.24725 0.95460 0.97686 1.02511 0.86282 0.78599 0.83431 0.78000 1.21257 1.21690 1.21036 1.19109 0.91336 0.83631 1.42893 0.91074 1.41763 1.07064 0.98283 1.85641 1.20176 0.96765 0.87679 0.91976 1.21248 0.93799 0.97958 0.84868 1.46031 1.10692 1.62447 1.17088 1.20414 0.87923 0.77356 0.83836 1.90638 1.14053 1.55613 1.82257 1.21396 0.99562 0.95876 0.92923 0.89313 1.22347 1.01154 0.97200 0.94210 1.22438 1.01344 0.95632 0.96254 1.21857 0.99970 0.95899 0.94594 1.21513 1.01208 0.92905 0.96670 1.23096 1.00921 0.93622 1.02752 1.23011 0.90701 1.03508 1.02794 1.23362 0.98259 1.03773 0.97384 1.23057 0.97741 0.96013 1.05540 0.93387 0.77806 0.92192 0.90728 0.76709 0.89465 0.91491 0.91371 0.91468 0.91601 0.91056 0.87500 0.88796 0.88759 0.88594 0.89989 0.88621 0.89026 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.11 13.08 55.49 0.73 -26.38 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 22.12 29.56 -169.99 -5.02 17.10 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.37 9.53 -15.06 -0.14 -6.51 16 8 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 9 N -0.69 -16.21 5.49 -47.23 -0.26 -16.47 16 10 C 0.13 2.43 2.18 -131.81 -0.29 2.14 16 11 C 0.15 2.67 5.78 -4.04 -0.02 2.65 16 12 N -0.71 -11.26 4.84 -60.29 -0.29 -11.55 16 13 C 0.52 8.32 5.77 -10.98 -0.06 8.26 16 14 O -0.55 -10.69 15.63 5.56 0.09 -10.61 16 15 C -0.08 -0.96 3.16 -90.80 -0.29 -1.25 16 16 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.11 -1.26 6.32 -24.99 -0.16 -1.42 16 18 C -0.12 -1.14 6.91 -24.67 -0.17 -1.31 16 19 C -0.09 -0.93 6.58 -25.23 -0.17 -1.10 16 20 C -0.12 -1.53 2.26 -154.25 -0.35 -1.88 16 21 C -0.17 -2.43 9.63 -26.91 -0.26 -2.69 16 22 C -0.16 -1.96 10.23 -26.91 -0.28 -2.24 16 23 C -0.19 -3.27 10.10 -26.73 -0.27 -3.54 16 24 C -0.19 -2.95 10.04 -26.73 -0.27 -3.22 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.39 9.69 8.06 -40.82 -0.33 9.36 16 27 H 0.06 1.06 7.88 -51.93 -0.41 0.65 16 28 H 0.07 1.58 7.72 -51.93 -0.40 1.18 16 29 H 0.40 5.74 8.43 -40.82 -0.34 5.40 16 30 H 0.09 1.18 6.84 -51.93 -0.36 0.82 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.11 1.86 6.81 -51.93 -0.35 1.51 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 41 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 42 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 351.49 15.07 5.30 5.30 Total: -1.00 -29.96 351.49 -9.51 -39.47 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: -7.23 Total: 15.54 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: -2.82 Total: -12.40 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: 0.17 Total: -54.40 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.96 -9.51 -39.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699654546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.657 kcal (2) G-P(sol) polarization free energy of solvation -29.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds