Wall clock time and date at job start Tue Mar 31 2020 00:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99275 * 2 1 4 4 H 1.48504 * 109.47082 * 245.00048 * 3 2 1 5 5 H 1.48501 * 109.47669 * 5.00114 * 3 2 1 6 6 H 1.48500 * 109.47154 * 125.00284 * 3 2 1 7 7 C 1.38810 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99498 * 185.15316 * 7 2 1 9 9 N 1.36933 * 119.99939 * 5.15478 * 7 2 1 10 10 C 1.46501 * 119.99939 * 184.66619 * 9 7 2 11 11 C 1.53002 * 115.54929 * 294.73455 * 10 9 7 12 12 N 1.46496 * 109.46885 * 276.32671 * 11 10 9 13 13 C 1.34777 * 119.99597 * 184.98799 * 12 11 10 14 14 O 1.21276 * 120.00563 * 4.55908 * 13 12 11 15 15 C 1.50708 * 119.99823 * 184.55752 * 13 12 11 16 16 H 1.08994 * 110.09568 * 328.82202 * 15 13 12 17 17 C 1.54377 * 110.07061 * 207.30305 * 15 13 12 18 18 C 1.54925 * 104.22516 * 217.20620 * 17 15 13 19 19 C 1.54989 * 102.82037 * 37.71999 * 18 17 15 20 20 C 1.53483 * 110.06907 * 90.33437 * 15 13 12 21 21 C 1.52558 * 121.08084 * 335.18616 * 20 15 13 22 22 C 1.52562 * 121.05797 * 263.47300 * 20 15 13 23 23 C 1.53007 * 117.51728 * 80.43251 * 10 9 7 24 24 C 1.52998 * 117.49952 * 149.06048 * 10 9 7 25 25 H 0.96997 * 120.00780 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00462 * 4.66741 * 9 7 2 27 27 H 1.09001 * 109.47089 * 156.33089 * 11 10 9 28 28 H 1.08997 * 109.46991 * 36.33180 * 11 10 9 29 29 H 0.96997 * 120.00471 * 4.98947 * 12 11 10 30 30 H 1.09006 * 110.48526 * 335.89158 * 17 15 13 31 31 H 1.09006 * 110.48020 * 98.52082 * 17 15 13 32 32 H 1.08996 * 110.74540 * 156.05793 * 18 17 15 33 33 H 1.09003 * 110.74145 * 279.39429 * 18 17 15 34 34 H 1.08997 * 110.51312 * 203.79469 * 19 18 17 35 35 H 1.09003 * 110.62567 * 81.13764 * 19 18 17 36 36 H 1.09003 * 117.51255 * 357.02316 * 21 20 15 37 37 H 1.09006 * 117.50860 * 142.10433 * 21 20 15 38 38 H 1.09004 * 117.51165 * 217.92699 * 22 20 15 39 39 H 1.09003 * 117.51449 * 3.02070 * 22 20 15 40 40 H 1.08992 * 117.49819 * 214.97239 * 23 10 9 41 41 H 1.09004 * 117.49637 * 359.97438 * 23 10 9 42 42 H 1.09001 * 117.50068 * 359.97438 * 24 10 9 43 43 H 1.08995 * 117.49865 * 144.99896 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 3.0099 1.7508 -1.2689 5 1 1.2896 2.7439 0.1220 6 1 3.1930 1.6451 1.1468 7 6 2.0103 -1.2021 -0.0005 8 1 3.0870 -1.2039 0.0835 9 7 1.3298 -2.3856 -0.1076 10 6 2.0507 -3.6568 -0.0056 11 6 3.0563 -3.9368 -1.1242 12 7 2.3573 -4.5101 -2.2769 13 6 3.0579 -4.9319 -3.3483 14 8 4.2703 -4.9137 -3.3256 15 6 2.3345 -5.4262 -4.5746 16 1 1.3903 -5.8907 -4.2906 17 6 3.2153 -6.4394 -5.3368 18 6 2.9317 -6.1422 -6.8306 19 6 2.8036 -4.5978 -6.8557 20 6 2.0790 -4.2613 -5.5407 21 6 2.0006 -2.8233 -5.0373 22 6 0.7419 -3.5267 -5.5516 23 6 2.3942 -4.1641 1.3965 24 6 1.2966 -4.8515 0.5818 25 1 -0.4851 0.8399 0.0004 26 1 0.3705 -2.3822 -0.2510 27 1 3.8087 -4.6408 -0.7686 28 1 3.5404 -3.0058 -1.4190 29 1 1.3904 -4.5862 -2.2692 30 1 4.2687 -6.2764 -5.1088 31 1 2.9240 -7.4601 -5.0890 32 1 3.7630 -6.4708 -7.4542 33 1 2.0006 -6.6119 -7.1476 34 1 2.2097 -4.2777 -7.7118 35 1 3.7884 -4.1312 -6.8793 36 1 2.0831 -2.6608 -3.9626 37 1 2.4351 -2.0456 -5.6654 38 1 0.3484 -3.2115 -6.5180 39 1 -0.0036 -3.8268 -4.8151 40 1 3.3365 -4.6973 1.5219 41 1 2.0842 -3.5517 2.2432 42 1 0.2642 -4.6915 0.8927 43 1 1.5168 -5.8368 0.1713 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699654546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:38:10 Heat of formation + Delta-G solvation = -4.958086 kcal Electronic energy + Delta-G solvation = -22358.896312 eV Core-core repulsion = 19211.470155 eV Total energy + Delta-G solvation = -3147.426157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.48430 -39.51692 -38.59075 -35.44556 -35.02076 -34.66044 -31.66874 -30.62289 -27.85427 -26.44316 -25.92604 -23.46538 -23.31743 -22.21808 -21.33229 -20.84709 -19.68008 -19.12659 -17.96877 -17.37077 -16.78415 -16.68923 -16.07440 -15.90936 -15.62494 -15.36111 -15.06141 -14.87431 -14.36040 -13.84363 -13.64696 -13.50252 -13.40038 -13.00144 -12.80318 -12.52479 -12.41655 -12.33288 -12.25410 -12.01440 -11.94244 -11.80102 -11.60046 -11.49005 -11.21197 -11.15507 -10.99755 -10.70845 -10.36930 -10.00008 -9.04656 -7.97304 -5.25544 1.44235 1.45785 1.51589 1.64922 2.18104 2.51105 2.81869 3.09836 3.36643 3.40971 3.63427 3.65556 3.81542 3.87406 3.89840 4.08249 4.17841 4.27629 4.30131 4.35824 4.49311 4.69123 4.75563 4.77578 4.79109 4.80634 4.91988 4.93648 5.01078 5.02678 5.08076 5.16022 5.17937 5.20112 5.22085 5.28328 5.36297 5.46466 5.52971 5.55130 6.25414 6.62913 7.29256 7.31763 8.04601 8.29016 9.24573 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017042 B = 0.005272 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.569622 B = 5309.351381 C = 6235.521539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.961 3.039 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.232 4.232 8 H 0.066 0.934 9 N -0.696 5.696 10 C 0.101 3.899 11 C 0.161 3.839 12 N -0.705 5.705 13 C 0.516 3.484 14 O -0.587 6.587 15 C -0.074 4.074 16 H 0.115 0.885 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.088 4.088 20 C -0.116 4.116 21 C -0.200 4.200 22 C -0.143 4.143 23 C -0.186 4.186 24 C -0.151 4.151 25 H 0.251 0.749 26 H 0.378 0.622 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.408 0.592 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.996 -14.984 -11.834 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.363 4.363 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.009 3.991 11 C 0.035 3.965 12 N -0.355 5.355 13 C 0.304 3.696 14 O -0.468 6.468 15 C -0.095 4.095 16 H 0.133 0.867 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.237 4.237 22 C -0.179 4.179 23 C -0.227 4.227 24 C -0.189 4.189 25 H 0.060 0.940 26 H 0.211 0.789 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.243 0.757 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.096 0.904 42 H 0.111 0.889 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.969 -14.794 -11.766 19.005 hybrid contribution -0.237 1.690 0.565 1.798 sum 1.732 -13.104 -11.200 17.326 Atomic orbital electron populations 1.69781 1.06190 1.26026 1.59192 1.25359 0.96204 1.00384 1.03683 0.85407 0.77469 0.80205 0.77892 1.21352 1.21896 1.20383 1.19330 0.91252 0.85020 1.40744 0.91593 1.41769 1.06667 0.99228 1.85784 1.20339 0.98398 0.87364 0.93016 1.20906 0.93745 0.96473 0.85390 1.45961 1.11021 1.61913 1.16623 1.21098 0.87593 0.76381 0.84501 1.90618 1.15950 1.57272 1.82949 1.21524 1.00516 0.96318 0.91185 0.86712 1.22364 0.99250 0.97872 0.95453 1.22440 1.02940 0.94366 0.94950 1.21916 0.99267 0.97124 0.94226 1.21642 1.01551 0.91250 0.97255 1.22977 1.04482 0.95557 1.00686 1.23102 0.89908 1.01407 1.03532 1.23366 1.00112 1.03733 0.95456 1.23123 0.97230 0.95800 1.02713 0.94003 0.78912 0.91378 0.94687 0.75698 0.92144 0.89372 0.90159 0.89292 0.89689 0.92559 0.91059 0.89092 0.86690 0.88125 0.87738 0.90431 0.88924 0.86427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.22 13.08 21.65 0.28 -56.93 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 3 Si 0.96 46.41 29.56 68.60 2.03 48.44 16 4 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.23 -12.63 9.53 84.03 0.80 -11.83 16 8 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 9 N -0.70 -33.31 5.49 -303.34 -1.66 -34.98 16 10 C 0.10 3.79 2.18 3.61 0.01 3.80 16 11 C 0.16 5.91 5.78 86.38 0.50 6.41 16 12 N -0.71 -22.05 4.84 -463.06 -2.24 -24.29 16 13 C 0.52 16.42 5.77 87.66 0.51 16.92 16 14 O -0.59 -23.34 15.63 -3.02 -0.05 -23.39 16 15 C -0.07 -1.73 3.16 -10.91 -0.03 -1.77 16 16 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.11 -2.28 6.32 31.72 0.20 -2.08 16 18 C -0.11 -1.73 6.91 31.93 0.22 -1.51 16 19 C -0.09 -1.72 6.58 31.57 0.21 -1.51 16 20 C -0.12 -2.73 2.26 -52.02 -0.12 -2.85 16 21 C -0.20 -5.90 9.63 30.48 0.29 -5.61 16 22 C -0.14 -3.15 10.23 30.48 0.31 -2.84 16 23 C -0.19 -6.25 10.10 30.60 0.31 -5.94 16 24 C -0.15 -4.44 10.04 30.59 0.31 -4.13 16 25 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 26 H 0.38 19.25 8.06 -92.71 -0.75 18.50 16 27 H 0.07 2.38 7.88 -2.39 -0.02 2.36 16 28 H 0.03 1.55 7.72 -2.39 -0.02 1.53 16 29 H 0.41 11.30 8.43 -92.71 -0.78 10.52 16 30 H 0.06 1.59 6.84 -2.38 -0.02 1.57 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 2.62 6.81 -2.39 -0.02 2.60 16 37 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 38 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.12 16 40 H 0.10 3.03 8.06 -2.39 -0.02 3.01 16 41 H 0.08 2.90 8.14 -2.38 -0.02 2.89 16 42 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 43 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -66.85 351.49 1.81 -65.04 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: -0.52 Total: 42.16 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 3.98 Total: -16.05 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.62 Total: -116.20 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -66.85 1.81 -65.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699654546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.083 kcal (2) G-P(sol) polarization free energy of solvation -66.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds