Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48499 * 109.47263 * 270.00040 * 3 2 1 5 5 H 1.48502 * 109.47293 * 30.00079 * 3 2 1 6 6 H 1.48504 * 109.47041 * 149.99981 * 3 2 1 7 7 C 1.38810 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99979 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46929 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88914 * 308.87471 * 12 11 10 14 14 C 1.55157 * 111.00639 * 72.80414 * 12 11 10 15 15 C 1.54338 * 103.02007 * 153.38066 * 14 12 11 16 16 N 1.47016 * 107.26704 * 338.13837 * 15 14 12 17 17 C 1.34776 * 125.64654 * 178.85321 * 16 15 14 18 18 O 1.21619 * 119.99533 * 183.86581 * 17 16 15 19 19 C 1.47098 * 120.00165 * 3.86431 * 17 16 15 20 20 C 1.32877 * 124.57562 * 175.21979 * 19 17 16 21 21 C 1.51113 * 110.60843 * 179.97438 * 20 19 17 22 22 C 1.54582 * 104.93538 * 16.65395 * 21 20 19 23 23 C 1.51113 * 124.61954 * 355.26109 * 19 17 16 24 24 C 1.47429 * 108.70325 * 358.58340 * 16 15 14 25 25 H 0.96998 * 120.00203 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99898 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47255 * 60.00118 * 10 9 7 28 28 H 1.09002 * 109.47255 * 299.99941 * 10 9 7 29 29 H 1.08991 * 109.47353 * 59.99692 * 11 10 9 30 30 H 1.09005 * 109.47088 * 299.99533 * 11 10 9 31 31 H 1.09001 * 110.71846 * 271.93719 * 14 12 11 32 32 H 1.08996 * 110.72266 * 35.03166 * 14 12 11 33 33 H 1.09006 * 109.98623 * 218.65994 * 15 14 12 34 34 H 1.09001 * 109.77750 * 97.49854 * 15 14 12 35 35 H 1.07995 * 124.77285 * 359.97438 * 20 19 17 36 36 H 1.08993 * 110.36851 * 257.76025 * 21 20 19 37 37 H 1.08994 * 110.36818 * 135.54323 * 21 20 19 38 38 H 1.08999 * 110.98579 * 93.01431 * 22 21 20 39 39 H 1.08997 * 110.98379 * 216.78378 * 22 21 20 40 40 H 1.08999 * 110.36082 * 44.55883 * 23 19 17 41 41 H 1.09000 * 110.45593 * 282.28222 * 23 19 17 42 42 H 1.08997 * 110.36543 * 143.19093 * 24 16 15 43 43 H 1.08990 * 110.37056 * 265.52039 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0005 13 1 2.5775 -6.1617 -0.7928 14 6 2.4770 -6.4121 1.3837 15 6 2.5692 -7.9520 1.4328 16 7 1.5801 -8.4789 0.4812 17 6 1.3643 -9.7821 0.2137 18 8 0.5660 -10.1021 -0.6463 19 6 2.0941 -10.8172 0.9618 20 6 1.8878 -12.1240 0.8376 21 6 2.8093 -12.8972 1.7522 22 6 3.3237 -11.8560 2.7724 23 6 3.1792 -10.5391 1.9761 24 6 0.8591 -7.3460 -0.1271 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8905 29 1 0.4376 -4.7618 -0.8913 30 1 0.4370 -4.7622 0.8887 31 1 3.4683 -5.9622 1.4388 32 1 1.8405 -6.0390 2.1860 33 1 2.3422 -8.3069 2.4381 34 1 3.5701 -8.2710 1.1419 35 1 1.1624 -12.5728 0.1753 36 1 3.6410 -13.3167 1.1863 37 1 2.2608 -13.6890 2.2622 38 1 2.6987 -11.8426 3.6653 39 1 4.3658 -12.0444 3.0306 40 1 2.8804 -9.7262 2.6378 41 1 4.1157 -10.2947 1.4747 42 1 0.6450 -7.5517 -1.1759 43 1 -0.0639 -7.1473 0.4175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700059681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -11.519539 kcal Electronic energy + Delta-G solvation = -21169.111854 eV Core-core repulsion = 18021.401171 eV Total energy + Delta-G solvation = -3147.710683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52196 -38.49043 -37.48016 -35.16377 -33.03583 -30.99831 -29.89092 -29.65731 -28.74714 -27.07895 -24.32308 -23.31616 -21.70206 -21.29218 -20.63515 -20.16975 -18.60847 -17.12089 -17.02410 -16.47514 -15.87331 -15.49145 -14.94204 -14.59063 -14.10864 -13.94001 -13.54729 -13.39243 -13.18271 -12.97637 -12.83563 -12.58908 -12.30153 -12.15568 -12.00834 -11.70843 -11.60987 -11.57666 -11.05000 -11.02040 -10.78469 -10.62854 -10.45308 -10.28376 -10.06778 -9.97955 -9.67657 -9.31043 -8.85993 -8.66326 -6.90893 -5.75505 -3.04231 1.12711 2.86550 3.10268 3.44100 3.48854 3.50785 4.06772 4.18969 4.42978 4.52649 4.59682 4.60787 4.75400 4.81643 4.92370 5.09818 5.14469 5.28024 5.31395 5.40153 5.41840 5.50140 5.55680 5.57687 5.64013 5.69424 5.76749 5.80219 5.85420 5.88825 5.98292 6.11423 6.21437 6.22424 6.28219 6.37043 6.41828 6.85060 6.89708 7.39525 7.70379 8.03826 8.43677 9.54430 10.13321 10.47490 11.47529 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046195 B = 0.002646 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.983739 B =10581.103893 C =11010.509715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.735 5.735 10 C 0.155 3.845 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.130 4.130 15 C 0.096 3.904 16 N -0.612 5.612 17 C 0.578 3.422 18 O -0.546 6.546 19 C -0.188 4.188 20 C -0.078 4.078 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.102 4.102 24 C 0.108 3.892 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.231 -25.269 6.102 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.028 3.972 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.168 4.168 15 C -0.027 4.027 16 N -0.345 5.345 17 C 0.369 3.631 18 O -0.425 6.425 19 C -0.191 4.191 20 C -0.098 4.098 21 C -0.144 4.144 22 C -0.162 4.162 23 C -0.138 4.138 24 C -0.014 4.014 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.941 -25.381 5.649 26.913 hybrid contribution 0.144 1.001 -0.052 1.013 sum 7.085 -24.380 5.597 25.999 Atomic orbital electron populations 1.69661 1.05121 1.25646 1.57853 1.24756 0.95544 0.97735 1.03115 0.86182 0.78617 0.83822 0.77526 1.21719 1.21765 1.20772 1.19232 0.91016 0.84216 1.42555 0.91215 1.42381 1.05917 1.00104 1.89504 1.20618 0.93463 0.85444 0.97706 1.21673 0.98664 0.92512 1.02536 1.22336 0.97487 0.94035 0.97494 0.89674 1.22802 1.02736 0.93078 0.98178 1.22494 0.92314 0.95035 0.92846 1.48364 1.38266 1.05136 1.42754 1.17660 0.82011 0.81013 0.82420 1.90797 1.37037 1.81394 1.33242 1.21847 1.00910 0.94310 1.01988 1.24103 0.95867 0.93980 0.95848 1.21476 0.98297 0.98351 0.96252 1.22460 1.01728 0.94152 0.97891 1.21702 0.96968 0.99070 0.96102 1.22377 0.95295 0.84422 0.99266 0.93512 0.78308 0.96313 0.96540 0.91497 0.91557 0.89565 0.90078 0.90780 0.91122 0.84479 0.89694 0.90286 0.90821 0.90500 0.89544 0.90217 0.90268 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.54 13.06 55.49 0.72 -27.81 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 9 N -0.74 -18.78 5.60 -59.91 -0.34 -19.12 16 10 C 0.16 3.05 6.16 -4.04 -0.02 3.02 16 11 C -0.12 -1.79 4.84 -26.73 -0.13 -1.91 16 12 C -0.09 -1.16 3.01 -88.47 -0.27 -1.43 16 13 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 14 C -0.13 -1.35 5.90 -24.89 -0.15 -1.50 16 15 C 0.10 0.88 5.20 -3.06 -0.02 0.87 16 16 N -0.61 -7.46 3.33 -171.90 -0.57 -8.03 16 17 C 0.58 7.88 7.82 -12.67 -0.10 7.78 16 18 O -0.55 -9.41 17.01 5.26 0.09 -9.32 16 19 C -0.19 -1.93 6.06 -102.68 -0.62 -2.55 16 20 C -0.08 -0.70 10.45 -35.96 -0.38 -1.07 16 21 C -0.11 -0.64 6.79 -26.85 -0.18 -0.82 16 22 C -0.12 -0.70 7.16 -25.07 -0.18 -0.88 16 23 C -0.10 -0.73 4.82 -26.85 -0.13 -0.86 16 24 C 0.11 1.38 6.40 -2.52 -0.02 1.37 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.38 10.29 7.67 -40.82 -0.31 9.98 16 27 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.07 1.03 7.97 -51.93 -0.41 0.62 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 33 H 0.07 0.58 5.97 -51.93 -0.31 0.27 16 34 H 0.07 0.57 6.96 -51.93 -0.36 0.21 16 35 H 0.14 1.25 8.04 -52.49 -0.42 0.83 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.58 4.96 -51.93 -0.26 0.32 16 41 H 0.08 0.53 7.67 -51.93 -0.40 0.13 16 42 H 0.08 1.09 8.00 -51.93 -0.42 0.67 16 43 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -33.55 342.18 -9.44 -43.00 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -7.05 Total: 4.08 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.43 Total: -5.44 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.18 Total: -54.96 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.55 -9.44 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700059681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.478 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds