Wall clock time and date at job start Mon Mar 30 2020 23:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99683 * 2 1 4 4 H 1.48499 * 109.47263 * 270.00040 * 3 2 1 5 5 H 1.48502 * 109.47293 * 30.00079 * 3 2 1 6 6 H 1.48504 * 109.47041 * 149.99981 * 3 2 1 7 7 C 1.38810 * 120.00037 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00187 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99979 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47000 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46929 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.88914 * 308.87471 * 12 11 10 14 14 C 1.55157 * 111.00639 * 72.80414 * 12 11 10 15 15 C 1.54338 * 103.02007 * 153.38066 * 14 12 11 16 16 N 1.47016 * 107.26704 * 338.13837 * 15 14 12 17 17 C 1.34776 * 125.64654 * 178.85321 * 16 15 14 18 18 O 1.21619 * 119.99533 * 183.86581 * 17 16 15 19 19 C 1.47098 * 120.00165 * 3.86431 * 17 16 15 20 20 C 1.32877 * 124.57562 * 175.21979 * 19 17 16 21 21 C 1.51113 * 110.60843 * 179.97438 * 20 19 17 22 22 C 1.54582 * 104.93538 * 16.65395 * 21 20 19 23 23 C 1.51113 * 124.61954 * 355.26109 * 19 17 16 24 24 C 1.47429 * 108.70325 * 358.58340 * 16 15 14 25 25 H 0.96998 * 120.00203 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99898 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.47255 * 60.00118 * 10 9 7 28 28 H 1.09002 * 109.47255 * 299.99941 * 10 9 7 29 29 H 1.08991 * 109.47353 * 59.99692 * 11 10 9 30 30 H 1.09005 * 109.47088 * 299.99533 * 11 10 9 31 31 H 1.09001 * 110.71846 * 271.93719 * 14 12 11 32 32 H 1.08996 * 110.72266 * 35.03166 * 14 12 11 33 33 H 1.09006 * 109.98623 * 218.65994 * 15 14 12 34 34 H 1.09001 * 109.77750 * 97.49854 * 15 14 12 35 35 H 1.07995 * 124.77285 * 359.97438 * 20 19 17 36 36 H 1.08993 * 110.36851 * 257.76025 * 21 20 19 37 37 H 1.08994 * 110.36818 * 135.54323 * 21 20 19 38 38 H 1.08999 * 110.98579 * 93.01431 * 22 21 20 39 39 H 1.08997 * 110.98379 * 216.78378 * 22 21 20 40 40 H 1.08999 * 110.36082 * 44.55883 * 23 19 17 41 41 H 1.09000 * 110.45593 * 282.28222 * 23 19 17 42 42 H 1.08997 * 110.36543 * 143.19093 * 24 16 15 43 43 H 1.08990 * 110.37056 * 265.52039 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0640 -4.8197 -0.0012 12 6 1.8290 -6.1447 -0.0005 13 1 2.5775 -6.1617 -0.7928 14 6 2.4770 -6.4121 1.3837 15 6 2.5692 -7.9520 1.4328 16 7 1.5801 -8.4789 0.4812 17 6 1.3643 -9.7821 0.2137 18 8 0.5660 -10.1021 -0.6463 19 6 2.0941 -10.8172 0.9618 20 6 1.8878 -12.1240 0.8376 21 6 2.8093 -12.8972 1.7522 22 6 3.3237 -11.8560 2.7724 23 6 3.1792 -10.5391 1.9761 24 6 0.8591 -7.3460 -0.1271 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7145 0.8895 28 1 2.6848 -3.7145 -0.8905 29 1 0.4376 -4.7618 -0.8913 30 1 0.4370 -4.7622 0.8887 31 1 3.4683 -5.9622 1.4388 32 1 1.8405 -6.0390 2.1860 33 1 2.3422 -8.3069 2.4381 34 1 3.5701 -8.2710 1.1419 35 1 1.1624 -12.5728 0.1753 36 1 3.6410 -13.3167 1.1863 37 1 2.2608 -13.6890 2.2622 38 1 2.6987 -11.8426 3.6653 39 1 4.3658 -12.0444 3.0306 40 1 2.8804 -9.7262 2.6378 41 1 4.1157 -10.2947 1.4747 42 1 0.6450 -7.5517 -1.1759 43 1 -0.0639 -7.1473 0.4175 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700059681.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:10 Heat of formation + Delta-G solvation = -32.388097 kcal Electronic energy + Delta-G solvation = -21170.016782 eV Core-core repulsion = 18021.401171 eV Total energy + Delta-G solvation = -3148.615611 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43849 -39.30892 -38.41865 -36.85242 -34.58848 -32.69208 -30.75649 -30.49187 -29.61616 -28.27534 -25.86732 -24.56283 -23.16544 -21.87497 -21.57653 -21.25123 -19.44744 -19.10469 -17.84712 -17.41980 -16.78457 -16.68738 -16.22769 -15.83972 -15.44497 -15.23249 -15.04525 -14.69489 -14.25099 -14.00783 -13.67962 -13.48168 -13.26835 -13.10417 -12.95021 -12.81743 -12.76231 -12.59750 -12.43984 -12.19596 -12.05388 -12.01362 -11.82540 -11.59675 -11.52826 -11.32972 -11.05520 -10.91055 -10.08476 -9.52845 -8.99363 -7.94884 -5.24030 0.33423 1.47920 1.50095 1.58504 1.93586 2.17795 2.56825 3.31160 3.39054 3.55064 3.60708 3.69551 3.78221 4.07239 4.14096 4.17904 4.27101 4.33505 4.35330 4.45421 4.55407 4.58526 4.75837 4.77050 4.78512 4.84734 4.86155 4.93081 4.97566 5.02154 5.09544 5.17797 5.21038 5.27925 5.38004 5.39200 5.44533 5.46532 5.50459 5.53945 6.27871 6.45522 7.03645 7.33483 8.10827 8.32677 9.29002 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046195 B = 0.002646 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.983739 B =10581.103893 C =11010.509715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.976 3.024 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.751 5.751 10 C 0.154 3.846 11 C -0.102 4.102 12 C -0.084 4.084 13 H 0.087 0.913 14 C -0.126 4.126 15 C 0.097 3.903 16 N -0.613 5.613 17 C 0.568 3.432 18 O -0.598 6.598 19 C -0.211 4.211 20 C -0.073 4.073 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.098 4.098 24 C 0.108 3.892 25 H 0.251 0.749 26 H 0.373 0.627 27 H 0.031 0.969 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.062 0.938 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.707 -26.342 7.680 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.804 3.196 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.377 4.377 8 H 0.096 0.904 9 N -0.394 5.394 10 C 0.028 3.972 11 C -0.140 4.140 12 C -0.104 4.104 13 H 0.106 0.894 14 C -0.164 4.164 15 C -0.024 4.024 16 N -0.344 5.344 17 C 0.361 3.639 18 O -0.481 6.481 19 C -0.214 4.214 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.157 4.157 23 C -0.134 4.134 24 C -0.014 4.014 25 H 0.060 0.940 26 H 0.204 0.796 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.478 -26.475 7.253 29.040 hybrid contribution -0.641 1.245 -0.581 1.516 sum 8.837 -25.230 6.672 27.553 Atomic orbital electron populations 1.69824 1.06717 1.26108 1.59640 1.25626 0.96444 1.01317 1.03788 0.85108 0.77773 0.79273 0.77424 1.21491 1.22192 1.19119 1.19668 0.91590 0.85368 1.41037 0.90440 1.42654 1.05711 1.01523 1.89471 1.20791 0.94040 0.84424 0.97908 1.21498 0.97860 0.92678 1.02013 1.22161 0.97061 0.91886 0.99259 0.89434 1.22816 1.03131 0.94054 0.96384 1.22695 0.92488 0.93980 0.93272 1.48457 1.38443 1.04667 1.42837 1.18315 0.81659 0.81887 0.82074 1.90757 1.39468 1.82210 1.35647 1.21920 1.02389 0.93727 1.03373 1.24415 0.95396 0.94161 0.95320 1.21546 0.98071 0.98480 0.95901 1.22488 1.03005 0.92744 0.97484 1.21727 0.95976 1.00275 0.95434 1.22266 0.95585 0.85117 0.98467 0.94014 0.79600 0.95102 0.96517 0.92575 0.91658 0.88230 0.90145 0.88695 0.89153 0.85686 0.88292 0.88857 0.90431 0.88566 0.88989 0.89390 0.91923 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 2 C -0.08 -4.62 5.50 84.86 0.47 -4.16 16 3 Si 0.98 46.18 29.55 68.60 2.03 48.21 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.24 -13.75 9.99 84.03 0.84 -12.91 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -38.48 5.60 -343.45 -1.92 -40.40 16 10 C 0.15 5.94 6.16 86.38 0.53 6.47 16 11 C -0.10 -3.13 4.84 30.60 0.15 -2.98 16 12 C -0.08 -2.00 3.01 -9.40 -0.03 -2.02 16 13 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 14 C -0.13 -2.32 5.90 31.79 0.19 -2.13 16 15 C 0.10 1.55 5.20 86.74 0.45 2.00 16 16 N -0.61 -14.51 3.33 -816.03 -2.71 -17.22 16 17 C 0.57 15.57 7.82 86.57 0.68 16.24 16 18 O -0.60 -21.58 17.01 -4.09 -0.07 -21.65 16 19 C -0.21 -4.10 6.06 -18.58 -0.11 -4.21 16 20 C -0.07 -1.23 10.45 24.64 0.26 -0.97 16 21 C -0.10 -0.94 6.79 30.52 0.21 -0.73 16 22 C -0.12 -0.93 7.16 31.67 0.23 -0.70 16 23 C -0.10 -1.12 4.82 30.51 0.15 -0.98 16 24 C 0.11 2.78 6.40 86.86 0.56 3.34 16 25 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 26 H 0.37 20.39 7.67 -92.71 -0.71 19.68 16 27 H 0.03 1.14 7.75 -2.39 -0.02 1.12 16 28 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.01 7.97 -2.38 -0.02 2.00 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.53 7.91 -2.39 -0.02 1.51 16 33 H 0.10 1.18 5.97 -2.38 -0.01 1.17 16 34 H 0.09 1.14 6.96 -2.39 -0.02 1.13 16 35 H 0.13 2.33 8.04 -2.91 -0.02 2.30 16 36 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.09 0.93 4.96 -2.39 -0.01 0.91 16 41 H 0.09 0.87 7.67 -2.39 -0.02 0.85 16 42 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 43 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 Total: -1.00 -73.45 342.18 2.44 -71.01 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.28 Total: 23.74 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 4.56 Total: -3.74 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -4.35 Total: -117.57 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.07 Total: -21.65 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -73.45 2.44 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700059681.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.626 kcal (2) G-P(sol) polarization free energy of solvation -73.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds