Wall clock time and date at job start Tue Mar 31 2020 00:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 119.99982 * 2 1 4 4 H 1.48504 * 109.46915 * 239.99711 * 3 2 1 5 5 H 1.48496 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47271 * 120.00037 * 3 2 1 7 7 C 1.38809 * 119.99760 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99637 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00144 * 179.97438 * 9 7 2 11 11 C 1.53010 * 109.47237 * 179.97438 * 10 9 7 12 12 H 1.08997 * 110.01443 * 306.39200 * 11 10 9 13 13 C 1.54265 * 110.02884 * 67.83345 * 11 10 9 14 14 C 1.54888 * 104.19721 * 142.89561 * 13 11 10 15 15 C 1.54892 * 102.74611 * 322.05788 * 14 13 11 16 16 H 1.09002 * 110.48502 * 279.26222 * 15 14 13 17 17 N 1.46498 * 110.59868 * 156.67242 * 15 14 13 18 18 C 1.34777 * 120.00140 * 88.32010 * 17 15 14 19 19 O 1.21290 * 119.99682 * 359.97438 * 18 17 15 20 20 C 1.50693 * 120.00561 * 180.02562 * 18 17 15 21 21 C 1.54638 * 111.03649 * 292.02363 * 20 18 17 22 22 C 1.51108 * 104.72454 * 217.33439 * 21 20 18 23 23 C 1.30521 * 111.10397 * 16.43104 * 22 21 20 24 24 C 1.51107 * 111.10654 * 0.02562 * 23 22 21 25 25 C 1.53873 * 110.03030 * 184.99855 * 11 10 9 26 26 H 0.97000 * 120.00053 * 0.02562 * 1 2 3 27 27 H 0.97001 * 120.00016 * 359.97438 * 9 7 2 28 28 H 1.08997 * 109.47377 * 60.00081 * 10 9 7 29 29 H 1.09004 * 109.47233 * 299.99495 * 10 9 7 30 30 H 1.09007 * 110.48635 * 261.57334 * 13 11 10 31 31 H 1.08996 * 110.49299 * 24.21629 * 13 11 10 32 32 H 1.08992 * 110.76047 * 203.74196 * 14 13 11 33 33 H 1.09000 * 110.75534 * 80.36765 * 14 13 11 34 34 H 0.97001 * 120.00222 * 268.31758 * 17 15 14 35 35 H 1.09001 * 110.91320 * 56.02841 * 20 18 17 36 36 H 1.09000 * 110.38563 * 336.14133 * 21 20 18 37 37 H 1.08993 * 110.39018 * 98.52236 * 21 20 18 38 38 H 1.07995 * 124.44710 * 196.45749 * 22 21 20 39 39 H 1.08003 * 124.44518 * 179.97438 * 23 22 21 40 40 H 1.08995 * 110.38371 * 224.75003 * 24 23 22 41 41 H 1.09000 * 110.48284 * 102.42244 * 24 23 22 42 42 H 1.09002 * 110.03017 * 121.43661 * 25 11 10 43 43 H 1.08996 * 110.07624 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.0637 -4.8198 0.0012 12 1 0.3598 -4.7083 0.8258 13 6 0.3042 -4.8663 -1.3407 14 6 0.1414 -6.3786 -1.6328 15 6 1.4872 -6.9683 -1.1426 16 1 2.2621 -6.8282 -1.8963 17 7 1.3397 -8.3893 -0.8184 18 6 1.5165 -9.3209 -1.7763 19 8 1.7972 -8.9826 -2.9067 20 6 1.3643 -10.7826 -1.4431 21 6 2.4959 -11.2583 -0.5026 22 6 2.8198 -12.6586 -0.9692 23 6 2.3371 -12.8802 -2.1614 24 6 1.6114 -11.6644 -2.6892 25 6 1.8160 -6.1562 0.1272 26 1 -0.4850 0.8400 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6847 -3.7145 0.8905 29 1 2.6846 -3.7146 -0.8895 30 1 -0.6711 -4.3893 -1.2438 31 1 0.8880 -4.3868 -2.1264 32 1 0.0089 -6.5539 -2.7004 33 1 -0.6917 -6.7940 -1.0657 34 1 1.1149 -8.6598 0.0855 35 1 0.3844 -10.9829 -1.0096 36 1 3.3690 -10.6134 -0.6026 37 1 2.1499 -11.2729 0.5308 38 1 3.3770 -13.3813 -0.3917 39 1 2.4433 -13.8101 -2.7003 40 1 0.6636 -11.9550 -3.1422 41 1 2.2308 -11.1349 -3.4131 42 1 1.4763 -6.6938 1.0125 43 1 2.8893 -5.9770 0.1883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700895410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:24 Heat of formation + Delta-G solvation = -26.930664 kcal Electronic energy + Delta-G solvation = -21201.312222 eV Core-core repulsion = 18052.933263 eV Total energy + Delta-G solvation = -3148.378959 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.49523 -38.64887 -37.41396 -34.82144 -33.41689 -31.14477 -29.95317 -28.77234 -28.51100 -27.40874 -24.42179 -22.76750 -22.14626 -20.50302 -20.13761 -19.43559 -19.10604 -17.50553 -16.98429 -16.64905 -16.22981 -15.26963 -14.91534 -14.38564 -14.28112 -13.87167 -13.37677 -13.21649 -13.16114 -12.75531 -12.69539 -12.50883 -12.20535 -12.06379 -11.77227 -11.54219 -11.44200 -11.36861 -11.03407 -10.82239 -10.68312 -10.60979 -10.32225 -10.14996 -9.94296 -9.86040 -9.63367 -9.24579 -9.06311 -8.82865 -6.87834 -5.73258 -3.01365 1.90371 2.49343 3.04048 3.46294 3.50407 3.51596 4.12759 4.25223 4.55217 4.61344 4.71401 4.83533 4.86541 4.93742 5.07790 5.22417 5.28821 5.41649 5.51450 5.54091 5.57741 5.61049 5.62720 5.66302 5.70061 5.84775 5.89481 5.94702 6.13552 6.15870 6.21040 6.29709 6.32677 6.50870 6.51856 6.58599 6.67690 6.83901 6.96985 7.39545 7.72500 8.11396 8.46149 9.57035 10.16133 10.50891 11.49731 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.051601 B = 0.002639 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.491964 B =10608.360519 C =10757.995653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.096 4.096 12 H 0.074 0.926 13 C -0.111 4.111 14 C -0.133 4.133 15 C 0.138 3.862 16 H 0.093 0.907 17 N -0.720 5.720 18 C 0.521 3.479 19 O -0.538 6.538 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.172 4.172 23 C -0.161 4.161 24 C -0.089 4.089 25 C -0.120 4.120 26 H 0.255 0.745 27 H 0.384 0.616 28 H 0.016 0.984 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -26.294 -0.113 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.115 4.115 12 H 0.092 0.908 13 C -0.149 4.149 14 C -0.172 4.172 15 C 0.034 3.966 16 H 0.112 0.888 17 N -0.371 5.371 18 C 0.307 3.693 19 O -0.414 6.414 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.190 4.190 23 C -0.179 4.179 24 C -0.126 4.126 25 C -0.159 4.159 26 H 0.065 0.935 27 H 0.217 0.783 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.152 -25.897 -0.930 26.002 hybrid contribution 0.027 0.785 0.534 0.950 sum 2.179 -25.112 -0.396 25.209 Atomic orbital electron populations 1.69650 1.05090 1.25694 1.57917 1.24735 0.95531 0.97666 1.03175 0.86263 0.78506 0.83575 0.77829 1.21294 1.21714 1.21320 1.19196 0.90992 0.84277 1.42500 0.91320 1.42347 1.05876 0.99961 1.89419 1.20796 0.93054 0.85390 0.97612 1.21884 0.97708 0.93766 0.98154 0.90776 1.22319 1.01004 0.94207 0.97337 1.22884 0.96608 0.96549 1.01119 1.21961 0.98434 0.78367 0.97854 0.88844 1.46140 1.71583 1.06649 1.12711 1.20367 0.76246 0.87579 0.85106 1.90705 1.47431 1.82320 1.20982 1.22197 1.01129 0.91923 0.98659 1.21312 0.97524 0.94859 0.98921 1.23206 1.01350 0.96936 0.97500 1.23333 0.99317 0.98565 0.96639 1.21303 1.01066 0.93257 0.97006 1.22397 1.01389 0.95874 0.96237 0.93517 0.78262 0.96585 0.96272 0.91233 0.90878 0.91510 0.91622 0.76703 0.87738 0.90169 0.90351 0.85578 0.85589 0.90747 0.88613 0.91586 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.72 5.45 -59.91 -0.33 -19.04 16 10 C 0.16 3.21 5.32 -4.04 -0.02 3.18 16 11 C -0.10 -1.51 2.96 -89.50 -0.27 -1.78 16 12 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.11 -1.73 6.08 -25.07 -0.15 -1.89 16 14 C -0.13 -1.75 6.58 -24.74 -0.16 -1.91 16 15 C 0.14 1.70 3.18 -66.27 -0.21 1.49 16 16 H 0.09 1.34 7.61 -51.93 -0.40 0.95 16 17 N -0.72 -7.15 5.17 -52.20 -0.27 -7.42 16 18 C 0.52 5.90 7.06 -10.99 -0.08 5.82 16 19 O -0.54 -8.35 15.19 5.55 0.08 -8.27 16 20 C -0.12 -0.96 3.55 -90.05 -0.32 -1.28 16 21 C -0.09 -0.62 6.37 -26.82 -0.17 -0.79 16 22 C -0.17 -1.18 10.78 -35.69 -0.38 -1.57 16 23 C -0.16 -1.17 10.77 -35.69 -0.38 -1.56 16 24 C -0.09 -0.78 6.18 -26.82 -0.17 -0.94 16 25 C -0.12 -1.47 6.18 -25.61 -0.16 -1.63 16 26 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 27 H 0.38 10.26 7.55 -40.82 -0.31 9.95 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 30 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 31 H 0.07 1.27 7.76 -51.93 -0.40 0.87 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.40 2.83 8.35 -40.82 -0.34 2.49 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 1.04 6.96 -51.93 -0.36 0.68 16 42 H 0.07 0.67 7.72 -51.93 -0.40 0.27 16 43 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 LS Contribution 347.14 15.07 5.23 5.23 Total: -1.00 -32.83 347.14 -9.51 -42.33 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.21 Total: 7.64 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: -2.72 Total: -10.32 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.13 Total: -54.29 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.08 Total: -8.27 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.83 -9.51 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700895410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.404 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds