Wall clock time and date at job start Tue Mar 31 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.43572 * 305.70452 * 11 10 9 13 13 C 1.54893 * 110.48149 * 68.24452 * 11 10 9 14 14 C 1.55032 * 102.68285 * 156.51618 * 13 11 10 15 15 C 1.54259 * 104.28073 * 322.23386 * 14 13 11 16 16 H 1.09005 * 110.03579 * 142.80067 * 15 14 13 17 17 N 1.46501 * 110.07346 * 264.20840 * 15 14 13 18 18 C 1.34771 * 119.99902 * 272.19258 * 17 15 14 19 19 O 1.21274 * 120.00451 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99891 * 179.97438 * 18 17 15 21 21 C 1.54627 * 111.03713 * 295.33235 * 20 18 17 22 22 C 1.51165 * 104.69487 * 217.36246 * 21 20 18 23 23 C 1.30521 * 111.11963 * 16.38007 * 22 21 20 24 24 C 1.51094 * 111.10707 * 0.03564 * 23 22 21 25 25 C 1.53881 * 106.60226 * 23.51626 * 15 14 13 26 26 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 30 30 H 1.09004 * 110.75410 * 274.93271 * 13 11 10 31 31 H 1.08997 * 110.76095 * 38.30574 * 13 11 10 32 32 H 1.08997 * 110.52582 * 203.48238 * 14 13 11 33 33 H 1.09007 * 110.36279 * 80.89877 * 14 13 11 34 34 H 0.97002 * 119.99985 * 92.18867 * 17 15 14 35 35 H 1.09002 * 110.91282 * 59.30083 * 20 18 17 36 36 H 1.09005 * 110.39134 * 336.14551 * 21 20 18 37 37 H 1.08998 * 110.39231 * 98.52011 * 21 20 18 38 38 H 1.08002 * 124.43010 * 196.40259 * 22 21 20 39 39 H 1.08000 * 124.44519 * 180.02562 * 23 22 21 40 40 H 1.08995 * 110.39064 * 224.75415 * 24 23 22 41 41 H 1.09001 * 110.48731 * 102.42048 * 24 23 22 42 42 H 1.08997 * 110.03068 * 240.71537 * 25 15 14 43 43 H 1.08995 * 110.07326 * 119.30459 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8816 -1.5360 -0.8283 13 6 6.0509 -1.5637 1.3487 14 6 7.5592 -1.9156 1.4175 15 6 7.6460 -3.3360 0.8220 16 1 8.5563 -3.4382 0.2311 17 7 7.6303 -4.3330 1.8953 18 6 8.7841 -4.7129 2.4791 19 8 9.8354 -4.2297 2.1157 20 6 8.7678 -5.7381 3.5836 21 6 8.0149 -5.2051 4.8246 22 6 8.7915 -5.7430 6.0046 23 6 9.9755 -6.1542 5.6404 24 6 10.1869 -5.9587 4.1571 25 6 6.4107 -3.5115 -0.0786 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.8484 -3.0428 0.8907 29 1 3.8490 -3.0424 -0.8892 30 1 5.9042 -0.4837 1.3369 31 1 5.5109 -2.0189 2.1790 32 1 7.9055 -1.9133 2.4510 33 1 8.1400 -1.2145 0.8180 34 1 6.7895 -4.7197 2.1858 35 1 8.3357 -6.6767 3.2369 36 1 8.0192 -4.1151 4.8324 37 1 6.9921 -5.5816 4.8389 38 1 8.4157 -5.7822 7.0164 39 1 10.7080 -6.5784 6.3112 40 1 10.6400 -6.8473 3.7177 41 1 10.8112 -5.0844 3.9727 42 1 5.7991 -4.3379 0.2835 43 1 6.7207 -3.6992 -1.1065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700895412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:33 Heat of formation + Delta-G solvation = -22.649959 kcal Electronic energy + Delta-G solvation = -21506.230955 eV Core-core repulsion = 18358.037621 eV Total energy + Delta-G solvation = -3148.193334 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.55904 -38.73646 -37.43383 -34.96559 -33.39229 -31.37631 -30.01197 -29.05724 -28.49889 -27.72675 -24.55445 -22.87699 -21.88657 -20.42220 -20.23518 -19.51188 -19.06939 -17.57560 -17.47841 -16.67204 -16.09928 -15.51409 -15.12764 -14.53315 -14.31829 -13.94469 -13.52648 -13.24384 -13.13321 -12.79518 -12.65035 -12.47623 -12.21776 -12.07123 -11.92218 -11.67098 -11.56373 -11.43614 -11.28421 -10.93099 -10.91964 -10.56406 -10.39483 -10.34657 -10.04554 -9.89638 -9.59113 -9.22011 -9.13927 -8.89400 -7.22583 -5.77329 -3.12346 1.93397 2.46897 3.02971 3.37007 3.39881 3.44950 4.14044 4.27587 4.52304 4.58810 4.64136 4.67018 4.86839 4.94595 4.95896 5.24288 5.32178 5.34122 5.44383 5.48273 5.50788 5.54108 5.54569 5.62641 5.66247 5.74000 5.80572 5.86267 5.91122 5.98534 6.02894 6.18336 6.19519 6.35738 6.42342 6.51960 6.54157 6.68553 6.80179 7.37413 7.99279 8.08303 8.42118 9.21627 9.94180 10.14388 11.41255 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.003245 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.132750 B = 8626.033454 C = 8928.846898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.166 3.834 11 C -0.103 4.103 12 H 0.076 0.924 13 C -0.114 4.114 14 C -0.133 4.133 15 C 0.140 3.860 16 H 0.088 0.912 17 N -0.718 5.718 18 C 0.522 3.478 19 O -0.542 6.542 20 C -0.118 4.118 21 C -0.091 4.091 22 C -0.169 4.169 23 C -0.164 4.164 24 C -0.087 4.087 25 C -0.121 4.121 26 H 0.259 0.741 27 H 0.361 0.639 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.401 0.599 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.857 -12.673 8.455 25.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.038 3.962 11 C -0.122 4.122 12 H 0.094 0.906 13 C -0.152 4.152 14 C -0.171 4.171 15 C 0.036 3.964 16 H 0.106 0.894 17 N -0.370 5.370 18 C 0.308 3.692 19 O -0.419 6.419 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.187 4.187 23 C -0.182 4.182 24 C -0.124 4.124 25 C -0.160 4.160 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.370 -12.405 8.157 25.206 hybrid contribution 0.019 1.041 0.184 1.058 sum 20.388 -11.364 8.342 24.787 Atomic orbital electron populations 1.69707 1.05114 1.25807 1.57721 1.24677 0.95241 0.97219 1.02120 0.86544 0.79231 0.84970 0.77787 1.21070 1.20317 1.21745 1.19065 0.80729 0.94687 1.42835 0.89295 1.42704 1.03971 1.02309 1.91104 1.20659 0.87895 0.89239 0.98358 1.22233 0.96166 0.95785 0.98007 0.90582 1.22556 0.94132 1.00979 0.97526 1.22804 0.97503 0.95773 1.01060 1.21646 0.99426 0.87652 0.87698 0.89409 1.46235 1.09228 1.43426 1.38073 1.20379 0.83777 0.82325 0.82674 1.90683 1.30975 1.56451 1.63797 1.22200 0.98970 0.98570 0.94207 1.21344 0.99202 1.01204 0.91049 1.23234 0.96411 1.00090 0.98916 1.23312 0.97601 1.00396 0.96867 1.21274 0.95549 1.03217 0.92381 1.22433 0.95213 0.98775 0.99564 0.93078 0.80656 0.95592 0.95729 0.91509 0.91160 0.91635 0.91038 0.76380 0.87624 0.90130 0.90146 0.85534 0.85611 0.90799 0.88823 0.90718 0.90776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.46 13.97 55.49 0.78 -28.68 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.14 27.74 -169.99 -4.71 17.43 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.73 5.27 -59.91 -0.32 -18.05 16 10 C 0.17 3.06 5.54 -4.04 -0.02 3.04 16 11 C -0.10 -1.47 2.90 -88.96 -0.26 -1.73 16 12 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 13 C -0.11 -1.58 6.11 -24.66 -0.15 -1.73 16 14 C -0.13 -1.60 6.54 -25.00 -0.16 -1.77 16 15 C 0.14 1.57 3.25 -66.81 -0.22 1.35 16 16 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 17 N -0.72 -7.08 5.02 -52.72 -0.26 -7.35 16 18 C 0.52 5.78 7.06 -10.99 -0.08 5.70 16 19 O -0.54 -8.02 15.19 5.56 0.08 -7.94 16 20 C -0.12 -0.99 3.54 -90.05 -0.32 -1.31 16 21 C -0.09 -0.70 6.37 -26.80 -0.17 -0.87 16 22 C -0.17 -1.26 10.78 -35.66 -0.38 -1.65 16 23 C -0.16 -1.25 10.77 -35.70 -0.38 -1.63 16 24 C -0.09 -0.76 6.16 -26.83 -0.17 -0.92 16 25 C -0.12 -1.36 6.14 -25.61 -0.16 -1.52 16 26 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 27 H 0.36 8.30 5.44 -40.82 -0.22 8.08 16 28 H 0.03 0.48 8.06 -51.93 -0.42 0.06 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 32 H 0.06 0.82 8.04 -51.93 -0.42 0.40 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.18 8.32 -40.82 -0.34 2.85 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.00 7.00 -51.93 -0.36 0.64 16 42 H 0.07 0.78 7.31 -51.93 -0.38 0.40 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -33.13 344.30 -9.15 -42.28 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.18 Total: 7.18 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -2.72 Total: -10.07 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: 0.19 Total: -54.08 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.94 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.13 -9.15 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700895412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.632 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds