Wall clock time and date at job start Tue Mar 31 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47337 * 179.97438 * 10 9 7 12 12 H 1.08991 * 110.43572 * 305.70452 * 11 10 9 13 13 C 1.54893 * 110.48149 * 68.24452 * 11 10 9 14 14 C 1.55032 * 102.68285 * 156.51618 * 13 11 10 15 15 C 1.54259 * 104.28073 * 322.23386 * 14 13 11 16 16 H 1.09005 * 110.03579 * 142.80067 * 15 14 13 17 17 N 1.46501 * 110.07346 * 264.20840 * 15 14 13 18 18 C 1.34771 * 119.99902 * 272.19258 * 17 15 14 19 19 O 1.21274 * 120.00451 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99891 * 179.97438 * 18 17 15 21 21 C 1.54627 * 111.03713 * 295.33235 * 20 18 17 22 22 C 1.51165 * 104.69487 * 217.36246 * 21 20 18 23 23 C 1.30521 * 111.11963 * 16.38007 * 22 21 20 24 24 C 1.51094 * 111.10707 * 0.03564 * 23 22 21 25 25 C 1.53881 * 106.60226 * 23.51626 * 15 14 13 26 26 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 28 28 H 1.08993 * 109.47502 * 300.00081 * 10 9 7 29 29 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 30 30 H 1.09004 * 110.75410 * 274.93271 * 13 11 10 31 31 H 1.08997 * 110.76095 * 38.30574 * 13 11 10 32 32 H 1.08997 * 110.52582 * 203.48238 * 14 13 11 33 33 H 1.09007 * 110.36279 * 80.89877 * 14 13 11 34 34 H 0.97002 * 119.99985 * 92.18867 * 17 15 14 35 35 H 1.09002 * 110.91282 * 59.30083 * 20 18 17 36 36 H 1.09005 * 110.39134 * 336.14551 * 21 20 18 37 37 H 1.08998 * 110.39231 * 98.52011 * 21 20 18 38 38 H 1.08002 * 124.43010 * 196.40259 * 22 21 20 39 39 H 1.08000 * 124.44519 * 180.02562 * 23 22 21 40 40 H 1.08995 * 110.39064 * 224.75415 * 24 23 22 41 41 H 1.09001 * 110.48731 * 102.42048 * 24 23 22 42 42 H 1.08997 * 110.03068 * 240.71537 * 25 15 14 43 43 H 1.08995 * 110.07326 * 119.30459 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 6 5.6163 -2.1915 0.0011 12 1 5.8816 -1.5360 -0.8283 13 6 6.0509 -1.5637 1.3487 14 6 7.5592 -1.9156 1.4175 15 6 7.6460 -3.3360 0.8220 16 1 8.5563 -3.4382 0.2311 17 7 7.6303 -4.3330 1.8953 18 6 8.7841 -4.7129 2.4791 19 8 9.8354 -4.2297 2.1157 20 6 8.7678 -5.7381 3.5836 21 6 8.0149 -5.2051 4.8246 22 6 8.7915 -5.7430 6.0046 23 6 9.9755 -6.1542 5.6404 24 6 10.1869 -5.9587 4.1571 25 6 6.4107 -3.5115 -0.0786 26 1 -0.4850 0.8401 -0.0004 27 1 3.8646 -0.3622 0.0007 28 1 3.8484 -3.0428 0.8907 29 1 3.8490 -3.0424 -0.8892 30 1 5.9042 -0.4837 1.3369 31 1 5.5109 -2.0189 2.1790 32 1 7.9055 -1.9133 2.4510 33 1 8.1400 -1.2145 0.8180 34 1 6.7895 -4.7197 2.1858 35 1 8.3357 -6.6767 3.2369 36 1 8.0192 -4.1151 4.8324 37 1 6.9921 -5.5816 4.8389 38 1 8.4157 -5.7822 7.0164 39 1 10.7080 -6.5784 6.3112 40 1 10.6400 -6.8473 3.7177 41 1 10.8112 -5.0844 3.9727 42 1 5.7991 -4.3379 0.2835 43 1 6.7207 -3.6992 -1.1065 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700895412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:32 Heat of formation + Delta-G solvation = -43.889184 kcal Electronic energy + Delta-G solvation = -21507.151957 eV Core-core repulsion = 18358.037621 eV Total energy + Delta-G solvation = -3149.114336 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = -0.03 seconds Orbital eigenvalues (eV) -41.40605 -39.67467 -38.30902 -36.56722 -34.69995 -33.25974 -30.89198 -30.24735 -29.17696 -28.75519 -26.14614 -23.70159 -23.65984 -21.43172 -21.20029 -20.57166 -19.65424 -19.51337 -18.31395 -17.49661 -16.94494 -16.63974 -16.34278 -16.08601 -15.74503 -15.01404 -14.94034 -14.67844 -14.36208 -13.81674 -13.70510 -13.52680 -13.47172 -13.03903 -12.88280 -12.76263 -12.69815 -12.46547 -12.21049 -12.10755 -12.05382 -11.97604 -11.84967 -11.66785 -11.58073 -11.48151 -10.94945 -10.80092 -10.05006 -9.80136 -9.27269 -8.02566 -5.35070 1.36522 1.37721 1.40720 1.48165 1.61680 2.21560 2.48515 3.29239 3.47828 3.48997 3.57627 3.66546 3.83220 3.96448 3.97420 4.25567 4.37221 4.41375 4.50564 4.52230 4.61020 4.61178 4.66961 4.72889 4.78051 4.82479 4.92153 4.93415 5.00980 5.07301 5.10391 5.15613 5.19508 5.22260 5.34919 5.51239 5.61078 5.65442 5.76845 5.98526 6.22186 6.57649 7.09264 7.25946 7.86824 8.05108 9.19186 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028416 B = 0.003245 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.132750 B = 8626.033454 C = 8928.846898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.066 4.066 3 Si 0.954 3.046 4 H -0.278 1.278 5 H -0.252 1.252 6 H -0.297 1.297 7 C -0.232 4.232 8 H 0.057 0.943 9 N -0.758 5.758 10 C 0.162 3.838 11 C -0.095 4.095 12 H 0.075 0.925 13 C -0.112 4.112 14 C -0.125 4.125 15 C 0.145 3.855 16 H 0.081 0.919 17 N -0.709 5.709 18 C 0.521 3.479 19 O -0.583 6.583 20 C -0.114 4.114 21 C -0.090 4.090 22 C -0.171 4.171 23 C -0.170 4.170 24 C -0.090 4.090 25 C -0.110 4.110 26 H 0.257 0.743 27 H 0.365 0.635 28 H 0.029 0.971 29 H 0.023 0.977 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.413 0.587 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.437 -13.238 8.966 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.257 4.257 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.176 1.176 6 H -0.224 1.224 7 C -0.363 4.363 8 H 0.075 0.925 9 N -0.404 5.404 10 C 0.036 3.964 11 C -0.114 4.114 12 H 0.093 0.907 13 C -0.150 4.150 14 C -0.163 4.163 15 C 0.040 3.960 16 H 0.099 0.901 17 N -0.361 5.361 18 C 0.309 3.691 19 O -0.463 6.463 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.189 4.189 23 C -0.188 4.188 24 C -0.128 4.128 25 C -0.149 4.149 26 H 0.066 0.934 27 H 0.198 0.802 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 21.976 -13.012 8.674 26.973 hybrid contribution -0.496 1.115 0.030 1.221 sum 21.481 -11.897 8.704 26.052 Atomic orbital electron populations 1.69889 1.07144 1.26648 1.59936 1.25509 0.96111 1.01260 1.02827 0.85422 0.78668 0.79672 0.78140 1.20375 1.17636 1.22356 1.19066 0.82883 0.93437 1.40957 0.92488 1.42740 1.02378 1.04401 1.90874 1.20857 0.90202 0.87159 0.98165 1.22119 0.93388 0.97608 0.98299 0.90676 1.22506 0.95206 1.00234 0.97047 1.22723 0.96205 0.96439 1.00976 1.21504 0.99076 0.87475 0.87906 0.90059 1.46159 1.09606 1.42844 1.37457 1.20833 0.83242 0.82246 0.82776 1.90669 1.32456 1.58020 1.65164 1.22233 0.99120 0.98597 0.93532 1.21368 1.00181 1.00460 0.90767 1.23430 0.96321 0.99593 0.99525 1.23432 0.98165 1.00870 0.96323 1.21273 0.95511 1.02464 0.93541 1.22343 0.94710 0.97293 1.00510 0.93375 0.80171 0.95288 0.95935 0.92559 0.91507 0.92069 0.90718 0.75010 0.85388 0.91410 0.88358 0.84020 0.84169 0.90093 0.91286 0.89533 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.30 13.97 21.65 0.30 -63.00 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 3 Si 0.95 45.44 27.74 68.60 1.90 47.34 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 6 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 7 C -0.23 -13.20 10.47 84.03 0.88 -12.32 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.51 16 9 N -0.76 -34.70 5.27 -343.45 -1.81 -36.51 16 10 C 0.16 5.73 5.54 86.38 0.48 6.21 16 11 C -0.10 -2.51 2.90 -9.72 -0.03 -2.54 16 12 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 13 C -0.11 -2.88 6.11 31.94 0.20 -2.68 16 14 C -0.12 -2.79 6.54 31.72 0.21 -2.59 16 15 C 0.15 2.95 3.25 45.72 0.15 3.10 16 16 H 0.08 1.84 7.56 -2.38 -0.02 1.82 16 17 N -0.71 -12.52 5.02 -439.10 -2.21 -14.72 16 18 C 0.52 10.84 7.06 87.66 0.62 11.46 16 19 O -0.58 -17.00 15.19 -3.01 -0.05 -17.05 16 20 C -0.11 -1.70 3.54 -10.43 -0.04 -1.74 16 21 C -0.09 -1.20 6.37 30.55 0.19 -1.01 16 22 C -0.17 -2.20 10.78 26.29 0.28 -1.91 16 23 C -0.17 -2.30 10.77 26.27 0.28 -2.02 16 24 C -0.09 -1.49 6.16 30.53 0.19 -1.30 16 25 C -0.11 -2.17 6.14 31.32 0.19 -1.98 16 26 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 27 H 0.37 16.03 5.44 -92.71 -0.50 15.52 16 28 H 0.03 1.03 8.06 -2.39 -0.02 1.01 16 29 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 31 H 0.07 1.76 8.00 -2.39 -0.02 1.74 16 32 H 0.06 1.44 8.04 -2.39 -0.02 1.42 16 33 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.41 5.44 8.32 -92.71 -0.77 4.67 16 35 H 0.13 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.07 1.09 7.88 -2.38 -0.02 1.07 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.49 7.00 -2.39 -0.02 1.47 16 42 H 0.09 1.53 7.31 -2.39 -0.02 1.51 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -72.09 344.30 1.88 -70.22 By element: Atomic # 1 Polarization: 26.79 SS G_CDS: -0.34 Total: 26.45 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.07 Total: -12.73 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -3.71 Total: -114.23 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.05 Total: -17.05 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Total: -72.09 1.88 -70.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700895412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.326 kcal (2) G-P(sol) polarization free energy of solvation -72.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.03 seconds