Wall clock time and date at job start Tue Mar 31 2020 00:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47597 * 300.00257 * 3 2 1 6 6 H 1.48497 * 109.47393 * 60.00376 * 3 2 1 7 7 C 1.38813 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00048 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.84891 * 23.80559 * 10 9 7 12 12 C 1.53778 * 113.61372 * 155.00168 * 10 9 7 13 13 C 1.53782 * 87.07853 * 139.98325 * 12 10 9 14 14 H 1.09006 * 113.61358 * 89.20199 * 13 12 10 15 15 C 1.53001 * 113.61592 * 220.01751 * 13 12 10 16 16 N 1.46496 * 109.47367 * 183.47404 * 15 13 12 17 17 C 1.34777 * 119.99971 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99692 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.46567 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.34778 * 304.16532 * 20 19 17 22 22 C 1.51101 * 110.39087 * 66.45789 * 20 19 17 23 23 C 1.30517 * 111.11153 * 135.24180 * 22 20 19 24 24 C 1.51106 * 111.10212 * 0.02562 * 23 22 20 25 25 C 1.54633 * 104.72610 * 343.56123 * 24 23 22 26 26 C 1.53777 * 87.17372 * 334.61196 * 13 12 10 27 27 H 0.96996 * 120.00051 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99539 * 0.02562 * 9 7 2 29 29 H 1.08997 * 113.61579 * 25.43763 * 12 10 9 30 30 H 1.09003 * 113.69122 * 254.54337 * 12 10 9 31 31 H 1.09006 * 109.46849 * 63.47168 * 15 13 12 32 32 H 1.08999 * 109.47191 * 303.47725 * 15 13 12 33 33 H 0.96997 * 120.00024 * 359.97438 * 16 15 13 34 34 H 1.09000 * 109.47735 * 60.00064 * 19 17 16 35 35 H 1.08991 * 109.47593 * 299.99262 * 19 17 16 36 36 H 1.08002 * 124.44004 * 315.22968 * 22 20 19 37 37 H 1.07999 * 124.45152 * 180.02562 * 23 22 20 38 38 H 1.08997 * 110.38952 * 102.37271 * 24 23 22 39 39 H 1.09009 * 110.38734 * 224.74846 * 24 23 22 40 40 H 1.08992 * 111.03606 * 142.66572 * 25 24 23 41 41 H 1.08996 * 111.03698 * 266.60534 * 25 24 23 42 42 H 1.08994 * 113.61326 * 139.94437 * 26 13 12 43 43 H 1.08998 * 113.61249 * 270.84022 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0659 -3.5641 0.4031 12 6 1.2605 -4.8291 0.5939 13 6 1.8476 -5.6973 -0.5315 14 1 2.7977 -6.1645 -0.2721 15 6 0.8441 -6.6847 -1.1307 16 7 1.5164 -7.5179 -2.1306 17 6 0.8242 -8.4651 -2.7941 18 8 -0.3552 -8.6278 -2.5631 19 6 1.5157 -9.3217 -3.8232 20 6 0.5121 -10.3092 -4.4222 21 1 0.0467 -10.9014 -3.6344 22 6 -0.5400 -9.5726 -5.2183 23 6 -0.7630 -10.1621 -6.3612 24 6 0.1028 -11.3906 -6.5178 25 6 1.2097 -11.2301 -5.4500 26 6 2.0001 -4.4027 -1.3472 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 0.1802 -4.7005 0.5277 30 1 1.5916 -5.1228 1.5900 31 1 0.0309 -6.1341 -1.6039 32 1 0.4420 -7.3187 -0.3405 33 1 2.4596 -7.3875 -2.3157 34 1 2.3288 -9.8726 -3.3504 35 1 1.9177 -8.6876 -4.6132 36 1 -1.0417 -8.6762 -4.8851 37 1 -1.4731 -9.8172 -7.0982 38 1 -0.4796 -12.2922 -6.3285 39 1 0.5399 -11.4224 -7.5160 40 1 1.4655 -12.1912 -5.0042 41 1 2.0923 -10.7484 -5.8707 42 1 2.9285 -4.3519 -1.9160 43 1 1.1224 -4.1573 -1.9450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707057952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:42 Heat of formation + Delta-G solvation = -3.155059 kcal Electronic energy + Delta-G solvation = -20785.938065 eV Core-core repulsion = 17638.590093 eV Total energy + Delta-G solvation = -3147.347972 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.14846 -38.83522 -38.07247 -34.64006 -33.28941 -31.85244 -30.23870 -29.15313 -27.62522 -25.29435 -25.07803 -23.74115 -21.10081 -20.86657 -20.45211 -19.11219 -18.80847 -17.14779 -16.92487 -16.25638 -16.08815 -15.58428 -15.02695 -14.74926 -14.69340 -13.84070 -13.67623 -13.46017 -13.00220 -12.71933 -12.27533 -12.08148 -12.06759 -11.89063 -11.81008 -11.51241 -11.39728 -11.36829 -11.23999 -10.98348 -10.86037 -10.52283 -10.23994 -10.11527 -9.83399 -9.76063 -9.47193 -9.07464 -8.98972 -8.87778 -6.97096 -5.79277 -3.08173 2.14669 2.64409 3.19160 3.41652 3.47106 3.49575 4.33746 4.37531 4.57457 4.60402 4.76926 4.96782 4.99469 5.01116 5.14874 5.21731 5.26380 5.30153 5.39914 5.46034 5.51464 5.54340 5.61781 5.68625 5.82997 5.85349 5.92746 5.95561 6.03123 6.08562 6.26798 6.31530 6.35745 6.41794 6.49351 6.58920 6.74852 6.82579 7.10803 7.50606 7.68560 8.23256 8.39329 9.50343 10.08798 10.42869 11.43195 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.002543 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.091694 B =11009.542950 C =11322.127806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.713 5.713 10 C 0.166 3.834 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.087 0.913 15 C 0.132 3.868 16 N -0.727 5.727 17 C 0.508 3.492 18 O -0.541 6.541 19 C -0.133 4.133 20 C -0.054 4.054 21 H 0.089 0.911 22 C -0.139 4.139 23 C -0.185 4.185 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.161 4.161 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.399 0.601 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.788 -23.163 -9.480 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.351 5.351 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.009 3.991 16 N -0.379 5.379 17 C 0.294 3.706 18 O -0.418 6.418 19 C -0.173 4.173 20 C -0.072 4.072 21 H 0.107 0.893 22 C -0.157 4.157 23 C -0.203 4.203 24 C -0.136 4.136 25 C -0.160 4.160 26 C -0.202 4.202 27 H 0.065 0.935 28 H 0.219 0.781 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.233 0.767 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.072 0.928 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.052 -23.085 -9.278 25.208 hybrid contribution 0.508 1.092 -0.115 1.210 sum 4.560 -21.993 -9.394 24.346 Atomic orbital electron populations 1.69673 1.05141 1.25645 1.57539 1.24781 0.95537 0.97823 1.02879 0.86114 0.78768 0.84083 0.77201 1.20538 1.21853 1.21841 1.19348 0.91090 0.84237 1.42780 0.91045 1.42426 1.05782 0.99907 1.86968 1.21551 0.95294 0.85036 0.92750 0.90692 1.23442 1.01040 0.97044 0.96697 1.22636 0.98377 0.94441 0.99179 0.89445 1.21410 0.95411 0.92017 0.90308 1.46106 1.13821 1.36516 1.41433 1.20688 0.87432 0.80564 0.81889 1.90703 1.15839 1.69281 1.65999 1.21724 0.99396 0.98159 0.98058 1.20815 0.93916 0.95009 0.97475 0.89304 1.23345 0.98027 0.99547 0.94793 1.23247 1.01223 0.97472 0.98358 1.21332 0.95941 0.97104 0.99208 1.22562 0.97969 0.99506 0.95976 1.23964 1.01295 0.95006 0.99932 0.93487 0.78069 0.90140 0.92019 0.91354 0.91913 0.76679 0.88867 0.88774 0.85575 0.86087 0.90958 0.91398 0.90889 0.90880 0.92800 0.90402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.71 -17.80 5.40 -52.55 -0.28 -18.08 16 10 C 0.17 3.19 4.48 -67.03 -0.30 2.89 16 11 H 0.08 1.43 8.10 -51.92 -0.42 1.01 16 12 C -0.14 -2.26 7.40 -25.92 -0.19 -2.45 16 13 C -0.13 -1.68 3.75 -89.81 -0.34 -2.01 16 14 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 15 C 0.13 1.72 5.50 -4.04 -0.02 1.70 16 16 N -0.73 -7.94 5.56 -60.29 -0.33 -8.27 16 17 C 0.51 6.05 7.59 -10.99 -0.08 5.96 16 18 O -0.54 -8.59 14.68 5.56 0.08 -8.51 16 19 C -0.13 -1.10 5.12 -27.88 -0.14 -1.24 16 20 C -0.05 -0.49 2.54 -90.72 -0.23 -0.72 16 21 H 0.09 0.92 8.01 -51.93 -0.42 0.51 16 22 C -0.14 -1.49 9.19 -35.69 -0.33 -1.82 16 23 C -0.19 -1.70 10.77 -35.69 -0.38 -2.09 16 24 C -0.10 -0.73 6.81 -26.83 -0.18 -0.91 16 25 C -0.12 -0.85 6.71 -25.02 -0.17 -1.01 16 26 C -0.16 -2.63 7.45 -25.83 -0.19 -2.83 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.39 10.27 7.92 -40.82 -0.32 9.95 16 29 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 3.32 8.47 -40.82 -0.35 2.97 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.13 1.58 7.31 -52.49 -0.38 1.20 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.44 7.91 -51.93 -0.41 0.03 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 1.42 7.92 -51.93 -0.41 1.01 16 LS Contribution 351.42 15.07 5.30 5.30 Total: -1.00 -32.11 351.42 -9.66 -41.77 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.31 Total: 9.93 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.81 Total: -11.91 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.11 Total: -53.87 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.08 Total: -8.51 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.11 -9.66 -41.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707057952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.615 kcal (2) G-P(sol) polarization free energy of solvation -32.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds