Wall clock time and date at job start Tue Mar 31 2020 00:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86789 * 119.99924 * 2 1 4 4 H 1.48501 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47597 * 300.00257 * 3 2 1 6 6 H 1.48497 * 109.47393 * 60.00376 * 3 2 1 7 7 C 1.38813 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99975 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00093 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00048 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.84891 * 23.80559 * 10 9 7 12 12 C 1.53778 * 113.61372 * 155.00168 * 10 9 7 13 13 C 1.53782 * 87.07853 * 139.98325 * 12 10 9 14 14 H 1.09006 * 113.61358 * 89.20199 * 13 12 10 15 15 C 1.53001 * 113.61592 * 220.01751 * 13 12 10 16 16 N 1.46496 * 109.47367 * 183.47404 * 15 13 12 17 17 C 1.34777 * 119.99971 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.50698 * 119.99692 * 179.97438 * 17 16 15 20 20 C 1.53004 * 109.46567 * 179.97438 * 19 17 16 21 21 H 1.08999 * 110.34778 * 304.16532 * 20 19 17 22 22 C 1.51101 * 110.39087 * 66.45789 * 20 19 17 23 23 C 1.30517 * 111.11153 * 135.24180 * 22 20 19 24 24 C 1.51106 * 111.10212 * 0.02562 * 23 22 20 25 25 C 1.54633 * 104.72610 * 343.56123 * 24 23 22 26 26 C 1.53777 * 87.17372 * 334.61196 * 13 12 10 27 27 H 0.96996 * 120.00051 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99539 * 0.02562 * 9 7 2 29 29 H 1.08997 * 113.61579 * 25.43763 * 12 10 9 30 30 H 1.09003 * 113.69122 * 254.54337 * 12 10 9 31 31 H 1.09006 * 109.46849 * 63.47168 * 15 13 12 32 32 H 1.08999 * 109.47191 * 303.47725 * 15 13 12 33 33 H 0.96997 * 120.00024 * 359.97438 * 16 15 13 34 34 H 1.09000 * 109.47735 * 60.00064 * 19 17 16 35 35 H 1.08991 * 109.47593 * 299.99262 * 19 17 16 36 36 H 1.08002 * 124.44004 * 315.22968 * 22 20 19 37 37 H 1.07999 * 124.45152 * 180.02562 * 23 22 20 38 38 H 1.08997 * 110.38952 * 102.37271 * 24 23 22 39 39 H 1.09009 * 110.38734 * 224.74846 * 24 23 22 40 40 H 1.08992 * 111.03606 * 142.66572 * 25 24 23 41 41 H 1.08996 * 111.03698 * 266.60534 * 25 24 23 42 42 H 1.08994 * 113.61326 * 139.94437 * 26 13 12 43 43 H 1.08998 * 113.61249 * 270.84022 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0659 -3.5641 0.4031 12 6 1.2605 -4.8291 0.5939 13 6 1.8476 -5.6973 -0.5315 14 1 2.7977 -6.1645 -0.2721 15 6 0.8441 -6.6847 -1.1307 16 7 1.5164 -7.5179 -2.1306 17 6 0.8242 -8.4651 -2.7941 18 8 -0.3552 -8.6278 -2.5631 19 6 1.5157 -9.3217 -3.8232 20 6 0.5121 -10.3092 -4.4222 21 1 0.0467 -10.9014 -3.6344 22 6 -0.5400 -9.5726 -5.2183 23 6 -0.7630 -10.1621 -6.3612 24 6 0.1028 -11.3906 -6.5178 25 6 1.2097 -11.2301 -5.4500 26 6 2.0001 -4.4027 -1.3472 27 1 -0.4850 0.8400 0.0004 28 1 0.3556 -2.3880 -0.0005 29 1 0.1802 -4.7005 0.5277 30 1 1.5916 -5.1228 1.5900 31 1 0.0309 -6.1341 -1.6039 32 1 0.4420 -7.3187 -0.3405 33 1 2.4596 -7.3875 -2.3157 34 1 2.3288 -9.8726 -3.3504 35 1 1.9177 -8.6876 -4.6132 36 1 -1.0417 -8.6762 -4.8851 37 1 -1.4731 -9.8172 -7.0982 38 1 -0.4796 -12.2922 -6.3285 39 1 0.5399 -11.4224 -7.5160 40 1 1.4655 -12.1912 -5.0042 41 1 2.0923 -10.7484 -5.8707 42 1 2.9285 -4.3519 -1.9160 43 1 1.1224 -4.1573 -1.9450 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707057952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:41 Heat of formation + Delta-G solvation = -23.668213 kcal Electronic energy + Delta-G solvation = -20786.827582 eV Core-core repulsion = 17638.590093 eV Total energy + Delta-G solvation = -3148.237489 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07429 -39.99434 -39.00739 -36.01287 -34.96760 -32.69266 -32.04307 -29.79377 -28.82658 -26.46505 -26.34296 -25.42466 -22.46496 -21.69772 -21.23466 -20.46859 -19.61993 -19.04505 -17.89850 -17.28286 -16.87402 -16.59335 -16.51935 -15.97389 -15.73027 -15.41061 -15.07899 -14.62734 -14.43283 -13.66431 -13.41021 -13.24491 -13.03935 -12.93996 -12.88038 -12.75846 -12.67059 -12.64648 -12.16363 -12.06537 -12.06228 -11.99954 -11.68620 -11.57549 -11.54676 -11.09153 -10.85258 -10.67633 -10.01568 -9.78618 -8.98431 -7.95274 -5.23789 1.38957 1.46963 1.47792 1.57884 1.72794 2.28926 2.56330 3.36790 3.63199 3.73569 3.75142 3.76581 3.90242 4.00537 4.08883 4.25442 4.35131 4.38702 4.42919 4.54026 4.57909 4.61270 4.69046 4.77499 4.80707 4.96975 4.98218 4.99240 5.02145 5.06549 5.12959 5.22432 5.31248 5.37796 5.44024 5.47878 5.54383 5.70528 5.74180 5.98782 6.27249 6.65228 7.32364 7.35309 8.10777 8.32362 9.28606 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032699 B = 0.002543 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.091694 B =11009.542950 C =11322.127806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.082 4.082 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.296 1.296 6 H -0.295 1.295 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.143 3.857 11 H 0.082 0.918 12 C -0.138 4.138 13 C -0.094 4.094 14 H 0.124 0.876 15 C 0.138 3.862 16 N -0.717 5.717 17 C 0.502 3.498 18 O -0.588 6.588 19 C -0.124 4.124 20 C -0.055 4.055 21 H 0.070 0.930 22 C -0.169 4.169 23 C -0.178 4.178 24 C -0.100 4.100 25 C -0.114 4.114 26 C -0.153 4.153 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.416 0.584 34 H 0.126 0.874 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.807 -25.126 -10.225 28.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.274 4.274 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.372 4.372 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.034 3.966 11 H 0.100 0.900 12 C -0.178 4.178 13 C -0.113 4.113 14 H 0.141 0.859 15 C 0.014 3.986 16 N -0.369 5.369 17 C 0.290 3.710 18 O -0.469 6.469 19 C -0.163 4.163 20 C -0.073 4.073 21 H 0.088 0.912 22 C -0.187 4.187 23 C -0.196 4.196 24 C -0.137 4.137 25 C -0.151 4.151 26 C -0.194 4.194 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.154 -25.097 -10.034 27.960 hybrid contribution -0.462 1.628 0.095 1.695 sum 6.692 -23.469 -9.939 26.351 Atomic orbital electron populations 1.69839 1.06775 1.25941 1.59896 1.25626 0.96391 1.01346 1.04033 0.85055 0.78384 0.79737 0.76500 1.18647 1.22306 1.22198 1.19782 0.91641 0.85324 1.40438 0.90160 1.42661 1.05350 1.01323 1.87488 1.22001 0.95647 0.83789 0.95193 0.89959 1.23330 0.99803 0.96070 0.98577 1.22466 0.99459 0.92962 0.96391 0.85855 1.21152 0.94844 0.91982 0.90622 1.45980 1.14549 1.35767 1.40654 1.21438 0.86980 0.80527 0.82013 1.90691 1.18088 1.70602 1.67470 1.21764 0.99487 0.97760 0.97332 1.20819 0.93846 0.95224 0.97433 0.91175 1.23306 0.99725 0.99574 0.96120 1.23535 1.00735 0.97708 0.97610 1.21406 0.95924 0.96044 1.00364 1.22570 0.97917 0.99753 0.94886 1.23733 1.00982 0.96151 0.98494 0.94132 0.79749 0.91797 0.90258 0.94198 0.92023 0.74696 0.85591 0.87125 0.88634 0.85748 0.90386 0.89823 0.89305 0.89345 0.91170 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 2 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 3 Si 0.97 46.30 29.55 68.60 2.03 48.33 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.24 -13.30 9.97 84.03 0.84 -12.46 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.73 -37.03 5.40 -320.18 -1.73 -38.77 16 10 C 0.14 5.38 4.48 45.57 0.20 5.59 16 11 H 0.08 2.97 8.10 -2.38 -0.02 2.95 16 12 C -0.14 -4.25 7.40 31.12 0.23 -4.02 16 13 C -0.09 -2.26 3.75 -10.27 -0.04 -2.30 16 14 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 15 C 0.14 3.49 5.50 86.38 0.47 3.97 16 16 N -0.72 -14.29 5.56 -463.06 -2.57 -16.86 16 17 C 0.50 11.50 7.59 87.66 0.67 12.16 16 18 O -0.59 -19.21 14.68 -3.03 -0.04 -19.26 16 19 C -0.12 -1.74 5.12 29.85 0.15 -1.59 16 20 C -0.05 -0.93 2.54 -10.86 -0.03 -0.95 16 21 H 0.07 1.44 8.01 -2.39 -0.02 1.42 16 22 C -0.17 -3.67 9.19 26.27 0.24 -3.43 16 23 C -0.18 -3.15 10.77 26.27 0.28 -2.87 16 24 C -0.10 -1.25 6.81 30.53 0.21 -1.04 16 25 C -0.11 -1.23 6.71 31.70 0.21 -1.01 16 26 C -0.15 -4.82 7.45 31.18 0.23 -4.59 16 27 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.37 20.54 7.92 -92.71 -0.73 19.80 16 29 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 30 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.04 1.25 7.88 -2.38 -0.02 1.23 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.42 5.47 8.47 -92.71 -0.79 4.69 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.96 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 2.62 7.31 -2.91 -0.02 2.60 16 37 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.71 7.91 -2.39 -0.02 0.69 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 Total: -1.00 -72.58 351.42 1.58 -71.00 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.53 Total: 32.81 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.14 Total: -16.84 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -4.02 Total: -116.04 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.04 Total: -19.26 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -72.58 1.58 -71.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707057952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.328 kcal (2) G-P(sol) polarization free energy of solvation -72.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds