Wall clock time and date at job start Tue Mar 31 2020 00:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85392 * 334.66983 * 10 9 7 12 12 C 1.53784 * 113.61474 * 105.86333 * 10 9 7 13 13 C 1.53958 * 87.02152 * 139.95421 * 12 10 9 14 14 H 1.08999 * 113.53698 * 89.18619 * 13 12 10 15 15 C 1.53002 * 113.74086 * 220.05552 * 13 12 10 16 16 N 1.46501 * 109.47261 * 272.59738 * 15 13 12 17 17 C 1.34772 * 119.99686 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00688 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99326 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.46901 * 179.97438 * 19 17 16 21 21 H 1.09002 * 110.34507 * 54.29804 * 20 19 17 22 22 C 1.51101 * 110.38838 * 292.01206 * 20 19 17 23 23 C 1.30725 * 110.99404 * 224.83883 * 22 20 19 24 24 C 1.51102 * 111.13202 * 359.84122 * 23 22 20 25 25 C 1.54631 * 104.72987 * 16.53643 * 24 23 22 26 26 C 1.53779 * 87.10895 * 334.63528 * 13 12 10 27 27 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.09004 * 113.61473 * 254.53275 * 12 10 9 30 30 H 1.08999 * 113.61705 * 25.42845 * 12 10 9 31 31 H 1.09001 * 109.46917 * 32.59378 * 15 13 12 32 32 H 1.08991 * 109.46903 * 152.59399 * 15 13 12 33 33 H 0.96998 * 119.99659 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.47678 * 299.99509 * 19 17 16 35 35 H 1.09004 * 109.47012 * 60.00371 * 19 17 16 36 36 H 1.08002 * 124.44603 * 44.73144 * 22 20 19 37 37 H 1.07996 * 124.41459 * 179.97438 * 23 22 20 38 38 H 1.09000 * 110.38639 * 257.72384 * 24 23 22 39 39 H 1.09000 * 110.38530 * 135.34873 * 24 23 22 40 40 H 1.08999 * 111.03706 * 217.33653 * 25 24 23 41 41 H 1.09003 * 111.03655 * 93.39687 * 25 24 23 42 42 H 1.08996 * 113.61644 * 270.81730 * 26 13 12 43 43 H 1.08997 * 113.68960 * 139.91902 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5373 -3.2916 0.4304 12 6 4.7541 -2.8116 -1.3542 13 6 5.9721 -3.3167 -0.5594 14 1 5.9062 -4.3693 -0.2842 15 6 7.3159 -2.9511 -1.1931 16 7 7.6960 -3.9828 -2.1613 17 6 8.8513 -3.8711 -2.8463 18 8 9.5760 -2.9164 -2.6615 19 6 9.2425 -4.9327 -3.8418 20 6 10.5862 -4.5671 -4.4756 21 1 11.3358 -4.3966 -3.7029 22 6 10.4409 -3.3415 -5.3475 23 6 11.0557 -3.5037 -6.4897 24 6 11.7148 -4.8613 -6.5656 25 6 11.0497 -5.6848 -5.4384 26 6 5.5392 -2.3584 0.5628 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3622 0.0007 29 1 4.2313 -3.5972 -1.8999 30 1 4.9661 -1.9370 -1.9691 31 1 7.2287 -1.9906 -1.7010 32 1 8.0774 -2.8836 -0.4163 33 1 7.1165 -4.7465 -2.3088 34 1 9.3294 -5.8931 -3.3337 35 1 8.4811 -5.0003 -4.6189 36 1 9.8991 -2.4511 -5.0644 37 1 11.0899 -2.7632 -7.2750 38 1 12.7869 -4.7733 -6.3895 39 1 11.5249 -5.3219 -7.5351 40 1 11.7725 -6.3424 -4.9555 41 1 10.1995 -6.2520 -5.8176 42 1 5.9662 -1.3596 0.4729 43 1 5.6489 -2.7774 1.5630 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707057955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:44 Heat of formation + Delta-G solvation = 0.917173 kcal Electronic energy + Delta-G solvation = -20842.712011 eV Core-core repulsion = 17695.540624 eV Total energy + Delta-G solvation = -3147.171386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.20246 -38.93629 -38.16070 -34.75124 -33.34163 -31.89532 -30.72096 -29.18827 -27.84426 -25.39075 -25.19813 -23.54141 -21.03541 -20.91672 -20.50391 -19.34475 -18.87112 -17.44791 -17.07751 -16.32589 -16.12703 -15.65690 -15.08720 -14.88855 -14.61678 -14.10201 -13.77410 -13.51134 -12.81096 -12.68923 -12.37046 -12.16778 -12.12073 -12.10370 -11.99666 -11.63486 -11.58366 -11.54063 -11.40522 -11.03371 -10.90521 -10.50173 -10.35284 -10.16713 -9.86914 -9.75377 -9.54920 -9.11112 -9.06369 -8.91000 -7.28469 -5.79944 -3.15458 2.09252 2.58303 3.12511 3.36629 3.39796 3.44479 4.29417 4.33687 4.56713 4.56936 4.70831 4.85728 4.88082 4.94441 5.08418 5.11997 5.20363 5.26295 5.35254 5.38037 5.40966 5.51130 5.57933 5.63326 5.65641 5.72172 5.79057 5.84683 5.90181 5.99273 6.15534 6.17978 6.21836 6.35329 6.41664 6.48911 6.67126 6.69889 6.96688 7.43882 7.96418 8.16758 8.39939 9.17739 9.90573 10.10371 11.38264 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.002717 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.542279 B =10301.191901 C =10650.188366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.291 1.291 7 C -0.248 4.248 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.083 0.917 12 C -0.160 4.160 13 C -0.126 4.126 14 H 0.090 0.910 15 C 0.132 3.868 16 N -0.728 5.728 17 C 0.508 3.492 18 O -0.542 6.542 19 C -0.134 4.134 20 C -0.054 4.054 21 H 0.089 0.911 22 C -0.141 4.141 23 C -0.184 4.184 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.145 4.145 27 H 0.260 0.740 28 H 0.362 0.638 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.400 0.600 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.355 -13.574 -9.501 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.109 0.891 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.101 0.899 12 C -0.201 4.201 13 C -0.146 4.146 14 H 0.109 0.891 15 C 0.008 3.992 16 N -0.379 5.379 17 C 0.295 3.705 18 O -0.419 6.419 19 C -0.174 4.174 20 C -0.072 4.072 21 H 0.107 0.893 22 C -0.158 4.158 23 C -0.202 4.202 24 C -0.136 4.136 25 C -0.160 4.160 26 C -0.185 4.185 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.234 0.766 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 22.583 -12.916 -9.337 27.641 hybrid contribution 0.188 0.980 -0.111 1.005 sum 22.772 -11.936 -9.448 27.391 Atomic orbital electron populations 1.69707 1.05123 1.25885 1.57334 1.24701 0.95272 0.97292 1.01897 0.86551 0.79238 0.84926 0.77835 1.21012 1.20292 1.21695 1.19131 0.80698 0.94752 1.43203 0.89147 1.42764 1.04089 1.02035 1.88850 1.21508 0.89492 0.89985 0.93000 0.89887 1.23941 0.95755 1.00523 0.99921 1.22666 0.93300 0.99813 0.98798 0.89134 1.21399 0.95796 0.91042 0.90930 1.46103 1.22580 1.26698 1.42541 1.20702 0.80915 0.87479 0.81424 1.90702 1.51778 1.33165 1.66225 1.21732 0.99071 0.98308 0.98246 1.20817 0.95877 0.93243 0.97286 0.89280 1.23380 0.99220 0.98664 0.94582 1.23304 1.00263 0.98277 0.98338 1.21328 0.99693 0.93622 0.98946 1.22566 1.00475 0.96964 0.96010 1.23443 0.98913 0.98934 0.97185 0.93026 0.80451 0.92306 0.90490 0.91458 0.91833 0.76587 0.88803 0.88735 0.85658 0.86087 0.90929 0.91358 0.90861 0.90852 0.90360 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.24 13.97 55.49 0.78 -28.46 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.44 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.09 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.74 -17.23 5.21 -52.64 -0.27 -17.51 16 10 C 0.17 3.13 4.47 -67.12 -0.30 2.83 16 11 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 12 C -0.16 -2.49 7.45 -25.82 -0.19 -2.68 16 13 C -0.13 -1.56 3.75 -89.71 -0.34 -1.89 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 15 C 0.13 1.61 5.52 -4.04 -0.02 1.59 16 16 N -0.73 -7.49 5.56 -60.30 -0.33 -7.82 16 17 C 0.51 5.78 7.61 -10.98 -0.08 5.70 16 18 O -0.54 -8.30 14.79 5.56 0.08 -8.22 16 19 C -0.13 -1.04 5.10 -27.88 -0.14 -1.19 16 20 C -0.05 -0.47 2.52 -90.71 -0.23 -0.70 16 21 H 0.09 0.90 7.96 -51.93 -0.41 0.49 16 22 C -0.14 -1.44 9.24 -35.75 -0.33 -1.77 16 23 C -0.18 -1.62 10.78 -35.75 -0.39 -2.00 16 24 C -0.10 -0.70 6.81 -26.83 -0.18 -0.88 16 25 C -0.12 -0.81 6.71 -25.01 -0.17 -0.98 16 26 C -0.15 -2.13 7.39 -25.92 -0.19 -2.32 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.36 8.38 5.77 -40.82 -0.24 8.15 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.31 7.91 -51.93 -0.41 0.90 16 31 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.40 3.09 8.47 -40.82 -0.35 2.74 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.13 1.50 7.44 -52.49 -0.39 1.11 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 7.91 -51.93 -0.41 0.01 16 42 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 348.50 15.07 5.25 5.25 Total: -1.00 -32.99 348.50 -9.31 -42.30 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -7.27 Total: 8.37 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.82 Total: -11.36 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.17 Total: -53.79 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.44 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.99 -9.31 -42.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707057955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.216 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds