Wall clock time and date at job start Tue Mar 31 2020 00:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85392 * 334.66983 * 10 9 7 12 12 C 1.53784 * 113.61474 * 105.86333 * 10 9 7 13 13 C 1.53958 * 87.02152 * 139.95421 * 12 10 9 14 14 H 1.08999 * 113.53698 * 89.18619 * 13 12 10 15 15 C 1.53002 * 113.74086 * 220.05552 * 13 12 10 16 16 N 1.46501 * 109.47261 * 272.59738 * 15 13 12 17 17 C 1.34772 * 119.99686 * 180.02562 * 16 15 13 18 18 O 1.21276 * 120.00688 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99326 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.46901 * 179.97438 * 19 17 16 21 21 H 1.09002 * 110.34507 * 54.29804 * 20 19 17 22 22 C 1.51101 * 110.38838 * 292.01206 * 20 19 17 23 23 C 1.30725 * 110.99404 * 224.83883 * 22 20 19 24 24 C 1.51102 * 111.13202 * 359.84122 * 23 22 20 25 25 C 1.54631 * 104.72987 * 16.53643 * 24 23 22 26 26 C 1.53779 * 87.10895 * 334.63528 * 13 12 10 27 27 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 29 29 H 1.09004 * 113.61473 * 254.53275 * 12 10 9 30 30 H 1.08999 * 113.61705 * 25.42845 * 12 10 9 31 31 H 1.09001 * 109.46917 * 32.59378 * 15 13 12 32 32 H 1.08991 * 109.46903 * 152.59399 * 15 13 12 33 33 H 0.96998 * 119.99659 * 359.97438 * 16 15 13 34 34 H 1.08997 * 109.47678 * 299.99509 * 19 17 16 35 35 H 1.09004 * 109.47012 * 60.00371 * 19 17 16 36 36 H 1.08002 * 124.44603 * 44.73144 * 22 20 19 37 37 H 1.07996 * 124.41459 * 179.97438 * 23 22 20 38 38 H 1.09000 * 110.38639 * 257.72384 * 24 23 22 39 39 H 1.09000 * 110.38530 * 135.34873 * 24 23 22 40 40 H 1.08999 * 111.03706 * 217.33653 * 25 24 23 41 41 H 1.09003 * 111.03655 * 93.39687 * 25 24 23 42 42 H 1.08996 * 113.61644 * 270.81730 * 26 13 12 43 43 H 1.08997 * 113.68960 * 139.91902 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5373 -3.2916 0.4304 12 6 4.7541 -2.8116 -1.3542 13 6 5.9721 -3.3167 -0.5594 14 1 5.9062 -4.3693 -0.2842 15 6 7.3159 -2.9511 -1.1931 16 7 7.6960 -3.9828 -2.1613 17 6 8.8513 -3.8711 -2.8463 18 8 9.5760 -2.9164 -2.6615 19 6 9.2425 -4.9327 -3.8418 20 6 10.5862 -4.5671 -4.4756 21 1 11.3358 -4.3966 -3.7029 22 6 10.4409 -3.3415 -5.3475 23 6 11.0557 -3.5037 -6.4897 24 6 11.7148 -4.8613 -6.5656 25 6 11.0497 -5.6848 -5.4384 26 6 5.5392 -2.3584 0.5628 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3622 0.0007 29 1 4.2313 -3.5972 -1.8999 30 1 4.9661 -1.9370 -1.9691 31 1 7.2287 -1.9906 -1.7010 32 1 8.0774 -2.8836 -0.4163 33 1 7.1165 -4.7465 -2.3088 34 1 9.3294 -5.8931 -3.3337 35 1 8.4811 -5.0003 -4.6189 36 1 9.8991 -2.4511 -5.0644 37 1 11.0899 -2.7632 -7.2750 38 1 12.7869 -4.7733 -6.3895 39 1 11.5249 -5.3219 -7.5351 40 1 11.7725 -6.3424 -4.9555 41 1 10.1995 -6.2520 -5.8176 42 1 5.9662 -1.3596 0.4729 43 1 5.6489 -2.7774 1.5630 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707057955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:43 Heat of formation + Delta-G solvation = -20.717063 kcal Electronic energy + Delta-G solvation = -20843.650142 eV Core-core repulsion = 17695.540624 eV Total energy + Delta-G solvation = -3148.109517 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.07732 -40.04970 -39.01959 -36.08887 -34.98168 -32.89924 -32.40616 -29.79548 -28.96165 -26.48995 -26.31709 -25.20944 -22.42236 -21.71119 -21.25781 -20.70552 -19.62605 -19.35147 -17.92874 -17.30499 -16.87380 -16.64330 -16.46564 -16.02988 -15.79413 -15.60427 -14.79607 -14.66537 -14.47388 -13.97882 -13.66044 -13.27090 -13.16110 -13.05172 -12.91578 -12.76676 -12.69538 -12.66060 -12.14584 -12.07240 -11.99977 -11.91215 -11.72407 -11.66761 -11.59381 -11.12279 -10.90314 -10.69615 -10.01644 -9.78108 -9.27550 -8.03885 -5.36054 1.36421 1.37704 1.38686 1.45850 1.72388 2.28952 2.46621 3.26512 3.58996 3.62764 3.71825 3.74796 3.82701 4.00137 4.07193 4.09757 4.27562 4.37733 4.38417 4.53406 4.57311 4.60831 4.68384 4.76864 4.80195 4.94092 4.96237 4.98880 5.01411 5.04834 5.12226 5.21436 5.30466 5.33931 5.43687 5.49432 5.66159 5.70152 5.77360 5.98105 6.22298 6.64402 7.07013 7.34404 7.85559 8.02962 9.17660 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030180 B = 0.002717 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.542279 B =10301.191901 C =10650.188366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.067 4.067 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.256 1.256 6 H -0.297 1.297 7 C -0.230 4.230 8 H 0.060 0.940 9 N -0.745 5.745 10 C 0.145 3.855 11 H 0.079 0.921 12 C -0.155 4.155 13 C -0.096 4.096 14 H 0.121 0.879 15 C 0.137 3.863 16 N -0.718 5.718 17 C 0.503 3.497 18 O -0.587 6.587 19 C -0.125 4.125 20 C -0.054 4.054 21 H 0.070 0.930 22 C -0.169 4.169 23 C -0.178 4.178 24 C -0.101 4.101 25 C -0.115 4.115 26 C -0.136 4.136 27 H 0.257 0.743 28 H 0.364 0.636 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.416 0.584 34 H 0.125 0.875 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.699 -15.460 -10.103 30.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.781 3.219 4 H -0.204 1.204 5 H -0.181 1.181 6 H -0.224 1.224 7 C -0.361 4.361 8 H 0.078 0.922 9 N -0.386 5.386 10 C 0.036 3.964 11 H 0.097 0.903 12 C -0.195 4.195 13 C -0.115 4.115 14 H 0.139 0.861 15 C 0.013 3.987 16 N -0.371 5.371 17 C 0.292 3.708 18 O -0.468 6.468 19 C -0.165 4.165 20 C -0.073 4.073 21 H 0.088 0.912 22 C -0.187 4.187 23 C -0.195 4.195 24 C -0.138 4.138 25 C -0.152 4.152 26 C -0.176 4.176 27 H 0.066 0.934 28 H 0.197 0.803 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.143 0.857 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 24.973 -14.872 -9.946 30.720 hybrid contribution -0.528 1.487 0.051 1.579 sum 24.445 -13.385 -9.895 29.574 Atomic orbital electron populations 1.69882 1.07039 1.26580 1.59949 1.25502 0.96125 1.01176 1.02981 0.85435 0.78495 0.79920 0.78074 1.20387 1.18087 1.22366 1.19131 0.82821 0.93475 1.40719 0.92165 1.42814 1.02476 1.04074 1.89268 1.21946 0.90883 0.87934 0.95587 0.90308 1.23762 0.97035 1.00342 0.98402 1.22497 0.91769 1.00826 0.96371 0.86092 1.21181 0.95610 0.90745 0.91135 1.46001 1.22617 1.26642 1.41815 1.21390 0.80421 0.87564 0.81472 1.90688 1.53229 1.35186 1.67677 1.21771 0.98839 0.98120 0.97733 1.20813 0.95994 0.93428 0.97069 0.91196 1.23351 1.00601 0.98855 0.95909 1.23585 0.98926 0.99318 0.97711 1.21402 0.99824 0.92506 1.00042 1.22575 1.01268 0.96279 0.95083 1.23343 0.95681 0.99674 0.98879 0.93406 0.80260 0.91503 0.92086 0.93713 0.91814 0.74736 0.85697 0.87178 0.88436 0.85695 0.90410 0.89865 0.89392 0.89381 0.90745 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.42 13.97 21.65 0.30 -63.12 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.95 46.22 27.74 68.60 1.90 48.12 16 4 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.26 -11.37 6.52 99.48 0.65 -10.72 16 6 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 7 C -0.23 -13.09 10.45 84.03 0.88 -12.21 16 8 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 9 N -0.75 -34.47 5.21 -320.45 -1.67 -36.14 16 10 C 0.15 5.14 4.47 45.52 0.20 5.34 16 11 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 12 C -0.15 -4.55 7.45 31.18 0.23 -4.32 16 13 C -0.10 -2.08 3.75 -10.21 -0.04 -2.12 16 14 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 15 C 0.14 3.10 5.52 86.38 0.48 3.57 16 16 N -0.72 -13.07 5.56 -463.07 -2.57 -15.64 16 17 C 0.50 10.74 7.61 87.66 0.67 11.40 16 18 O -0.59 -18.09 14.79 -3.02 -0.04 -18.13 16 19 C -0.13 -1.64 5.10 29.85 0.15 -1.48 16 20 C -0.05 -0.87 2.52 -10.86 -0.03 -0.90 16 21 H 0.07 1.38 7.96 -2.39 -0.02 1.36 16 22 C -0.17 -3.45 9.24 26.06 0.24 -3.21 16 23 C -0.18 -2.96 10.78 26.06 0.28 -2.67 16 24 C -0.10 -1.18 6.81 30.53 0.21 -0.98 16 25 C -0.11 -1.17 6.71 31.71 0.21 -0.96 16 26 C -0.14 -3.67 7.39 31.12 0.23 -3.44 16 27 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 28 H 0.36 16.42 5.77 -92.71 -0.53 15.88 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.01 7.91 -2.39 -0.02 2.00 16 31 H 0.04 1.23 7.86 -2.39 -0.02 1.21 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.42 4.94 8.47 -92.71 -0.79 4.16 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.10 2.49 7.44 -2.91 -0.02 2.47 16 37 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.09 0.66 7.91 -2.39 -0.02 0.64 16 42 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -74.45 348.50 1.71 -72.73 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: -0.39 Total: 27.63 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 4.18 Total: -15.46 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.94 Total: -114.90 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -0.04 Total: -18.13 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.90 Total: 48.12 kcal Total: -74.45 1.71 -72.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707057955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.016 kcal (2) G-P(sol) polarization free energy of solvation -74.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds