Wall clock time and date at job start Mon Mar 30 2020 23:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 337.78781 * 7 2 1 9 9 N 1.36937 * 119.99840 * 157.77450 * 7 2 1 10 10 C 1.46499 * 120.00204 * 321.42610 * 9 7 2 11 11 C 1.53006 * 109.47000 * 269.99959 * 10 9 7 12 12 C 1.52999 * 109.46800 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47112 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00483 * 179.97438 * 13 12 11 15 15 O 1.21619 * 119.99451 * 0.02562 * 14 13 12 16 16 C 1.47099 * 120.00306 * 179.97438 * 14 13 12 17 17 C 1.32610 * 124.61903 * 179.69797 * 16 14 13 18 18 C 1.51118 * 110.75725 * 179.84596 * 17 16 14 19 19 C 1.54573 * 104.90159 * 343.80558 * 18 17 16 20 20 C 1.51108 * 124.61909 * 0.02562 * 16 14 13 21 21 C 1.46505 * 119.99883 * 141.42662 * 9 7 2 22 22 C 1.53006 * 117.49670 * 3.19117 * 21 9 7 23 23 C 1.52998 * 117.49913 * 294.53331 * 21 9 7 24 24 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47161 * 29.99961 * 10 9 7 26 26 H 1.09000 * 109.47313 * 150.00403 * 10 9 7 27 27 H 1.08998 * 109.47165 * 299.99999 * 11 10 9 28 28 H 1.08994 * 109.47147 * 60.00189 * 11 10 9 29 29 H 1.08998 * 109.47166 * 299.99882 * 12 11 10 30 30 H 1.09000 * 109.47508 * 60.00447 * 12 11 10 31 31 H 0.97007 * 119.99775 * 359.97438 * 13 12 11 32 32 H 1.08000 * 124.62281 * 0.02562 * 17 16 14 33 33 H 1.08999 * 110.51949 * 224.84989 * 18 17 16 34 34 H 1.09003 * 110.14803 * 102.57637 * 18 17 16 35 35 H 1.08998 * 110.98239 * 266.71128 * 19 18 17 36 36 H 1.09000 * 110.98594 * 142.90845 * 19 18 17 37 37 H 1.09002 * 110.36642 * 315.43311 * 20 16 14 38 38 H 1.08999 * 110.36676 * 77.64437 * 20 16 14 39 39 H 1.09001 * 115.55232 * 148.85853 * 21 9 7 40 40 H 1.08993 * 117.49982 * 0.02562 * 22 21 9 41 41 H 1.09000 * 117.49376 * 145.01943 * 22 21 9 42 42 H 1.09001 * 117.50045 * 214.98064 * 23 21 9 43 43 H 1.09006 * 117.49626 * 359.97234 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0102 -1.2022 0.0005 8 1 1.5303 -2.1026 0.3545 9 7 3.3033 -1.2464 -0.4480 10 6 3.7040 -0.4466 -1.6082 11 6 3.5030 -1.2647 -2.8855 12 6 3.9220 -0.4296 -4.0971 13 7 3.7301 -1.2130 -5.3201 14 6 4.0345 -0.6770 -6.5186 15 8 4.4689 0.4571 -6.5847 16 6 3.8424 -1.4638 -7.7465 17 6 4.1055 -1.0265 -8.9704 18 6 3.7974 -2.0914 -9.9974 19 6 3.6909 -3.4044 -9.1889 20 6 3.3117 -2.8781 -7.7856 21 6 4.2861 -2.0936 0.2323 22 6 3.7893 -2.9613 1.3905 23 6 4.6552 -1.7308 1.6721 24 1 -0.4850 0.8401 0.0004 25 1 3.0947 0.4560 -1.6552 26 1 4.7545 -0.1715 -1.5146 27 1 4.1122 -2.1673 -2.8385 28 1 2.4525 -1.5398 -2.9792 29 1 3.3131 0.4732 -4.1442 30 1 4.9726 -0.1549 -4.0032 31 1 3.3840 -2.1177 -5.2673 32 1 4.4904 -0.0442 -9.2015 33 1 4.6024 -2.1607 -10.7291 34 1 2.8513 -1.8729 -10.4927 35 1 4.6473 -3.9267 -9.1648 36 1 2.9069 -4.0470 -9.5894 37 1 3.7862 -3.4828 -7.0128 38 1 2.2293 -2.8808 -7.6571 39 1 5.0732 -2.5024 -0.4013 40 1 2.7314 -2.9022 1.6459 41 1 4.2500 -3.9408 1.5190 42 1 5.6850 -1.9012 1.9859 43 1 4.1671 -0.8615 2.1130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707480216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:32 Heat of formation + Delta-G solvation = 19.140918 kcal Electronic energy + Delta-G solvation = -21323.113140 eV Core-core repulsion = 18176.731994 eV Total energy + Delta-G solvation = -3146.381146 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.96829 -37.92920 -37.35665 -35.37979 -33.64609 -31.90197 -30.27449 -29.31008 -28.47940 -25.38458 -23.84352 -22.13125 -21.66460 -21.24298 -20.84638 -19.64174 -18.68700 -17.25650 -16.58273 -16.01567 -15.66384 -15.60720 -15.29506 -14.97089 -14.30665 -13.89222 -13.62117 -13.07489 -12.94573 -12.71232 -12.46025 -12.30859 -12.15373 -12.06124 -11.89776 -11.52677 -11.44635 -11.15530 -11.06285 -10.84302 -10.66527 -10.37243 -10.02605 -9.85074 -9.72448 -9.47241 -9.42926 -9.19447 -8.85846 -8.54246 -6.76763 -6.06410 -3.49422 1.27656 3.28450 3.30958 3.33680 3.45111 3.51178 4.25683 4.32982 4.47073 4.69647 4.71827 4.84107 4.85691 5.03779 5.23834 5.34936 5.40767 5.47823 5.47958 5.51291 5.58917 5.67783 5.76652 5.80718 5.87757 5.95994 6.01152 6.07962 6.12197 6.19966 6.32285 6.34988 6.40712 6.48148 6.60952 6.72181 6.87728 6.91674 7.09567 7.62973 8.00202 8.30633 8.34784 8.93378 9.64595 10.04814 11.08289 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.003679 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.549845 B = 7609.666224 C = 8092.715869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.041 3.959 3 Si 0.871 3.129 4 H -0.283 1.283 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.272 4.272 8 H 0.083 0.917 9 N -0.573 5.573 10 C 0.145 3.855 11 C -0.145 4.145 12 C 0.117 3.883 13 N -0.719 5.719 14 C 0.560 3.440 15 O -0.548 6.548 16 C -0.190 4.190 17 C -0.080 4.080 18 C -0.107 4.107 19 C -0.123 4.123 20 C -0.093 4.093 21 C 0.120 3.880 22 C -0.188 4.188 23 C -0.224 4.224 24 H 0.264 0.736 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.137 0.863 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.322 -7.154 -15.554 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.160 4.160 3 Si 0.701 3.299 4 H -0.211 1.211 5 H -0.228 1.228 6 H -0.190 1.190 7 C -0.401 4.401 8 H 0.100 0.900 9 N -0.292 5.292 10 C 0.019 3.981 11 C -0.186 4.186 12 C -0.007 4.007 13 N -0.369 5.369 14 C 0.348 3.652 15 O -0.427 6.427 16 C -0.193 4.193 17 C -0.100 4.100 18 C -0.143 4.143 19 C -0.160 4.160 20 C -0.130 4.130 21 C 0.011 3.989 22 C -0.226 4.226 23 C -0.265 4.265 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.235 0.765 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.434 -6.241 -15.558 18.766 hybrid contribution 0.155 0.646 0.227 0.702 sum 8.589 -5.595 -15.331 18.443 Atomic orbital electron populations 1.69856 1.06010 1.26883 1.50822 1.25485 0.95057 0.97760 0.97708 0.87005 0.80960 0.84672 0.77243 1.21107 1.22808 1.19038 1.18721 0.85775 0.94426 1.41131 0.89978 1.43667 1.06863 1.50689 1.27976 1.21032 0.97770 0.93836 0.85482 1.22382 1.02847 0.99201 0.94126 1.21484 1.01201 0.95143 0.82853 1.46011 1.66049 1.18608 1.06231 1.18013 0.77784 0.86083 0.83365 1.90785 1.45995 1.18675 1.87259 1.21899 1.05787 0.97760 0.93852 1.24026 0.93265 0.99158 0.93539 1.21476 1.02334 0.93101 0.97438 1.22425 1.02146 0.96831 0.94614 1.21275 1.01298 0.92241 0.98217 1.21162 0.94120 0.97034 0.86548 1.23063 1.00998 0.93439 1.05105 1.23386 0.98346 0.99704 1.05082 0.92581 0.92519 0.93783 0.92096 0.90444 0.91508 0.91777 0.76461 0.84530 0.90296 0.89723 0.90826 0.90485 0.90700 0.90023 0.89143 0.87912 0.90511 0.90833 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.97 55.49 0.78 -25.91 16 2 C 0.04 1.16 5.30 -17.43 -0.09 1.07 16 3 Si 0.87 21.96 25.08 -169.99 -4.26 17.70 16 4 H -0.28 -6.98 6.69 56.52 0.38 -6.60 16 5 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.27 -7.29 8.95 -15.06 -0.13 -7.43 16 8 H 0.08 2.38 6.86 -52.48 -0.36 2.02 16 9 N -0.57 -13.10 2.39 -165.65 -0.40 -13.49 16 10 C 0.14 2.99 4.55 -4.04 -0.02 2.98 16 11 C -0.15 -2.51 5.65 -26.73 -0.15 -2.67 16 12 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16 13 N -0.72 -10.15 5.55 -61.49 -0.34 -10.49 16 14 C 0.56 8.52 7.79 -12.67 -0.10 8.42 16 15 O -0.55 -10.41 16.77 5.26 0.09 -10.32 16 16 C -0.19 -2.20 6.09 -102.73 -0.63 -2.83 16 17 C -0.08 -0.82 10.43 -36.00 -0.38 -1.19 16 18 C -0.11 -0.76 6.80 -26.85 -0.18 -0.94 16 19 C -0.12 -0.83 7.17 -25.07 -0.18 -1.01 16 20 C -0.09 -0.80 6.02 -26.84 -0.16 -0.96 16 21 C 0.12 2.36 6.56 -67.93 -0.45 1.92 16 22 C -0.19 -3.52 9.80 -26.69 -0.26 -3.79 16 23 C -0.22 -4.25 10.36 -26.69 -0.28 -4.53 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.06 1.31 3.40 -51.93 -0.18 1.13 16 26 H 0.04 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.40 4.66 7.48 -40.82 -0.31 4.35 16 32 H 0.14 1.43 8.03 -52.49 -0.42 1.01 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.10 2.18 6.44 -51.93 -0.33 1.85 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.47 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -31.80 348.09 -9.00 -40.79 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.08 Total: 5.56 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -3.03 Total: -9.09 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.04 Total: -49.89 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.26 Total: 17.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.80 -9.00 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707480216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.936 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds