Wall clock time and date at job start Mon Mar 30 2020 23:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 337.78781 * 7 2 1 9 9 N 1.36937 * 119.99840 * 157.77450 * 7 2 1 10 10 C 1.46499 * 120.00204 * 321.42610 * 9 7 2 11 11 C 1.53006 * 109.47000 * 269.99959 * 10 9 7 12 12 C 1.52999 * 109.46800 * 180.02562 * 11 10 9 13 13 N 1.46503 * 109.47112 * 179.97438 * 12 11 10 14 14 C 1.34772 * 120.00483 * 179.97438 * 13 12 11 15 15 O 1.21619 * 119.99451 * 0.02562 * 14 13 12 16 16 C 1.47099 * 120.00306 * 179.97438 * 14 13 12 17 17 C 1.32610 * 124.61903 * 179.69797 * 16 14 13 18 18 C 1.51118 * 110.75725 * 179.84596 * 17 16 14 19 19 C 1.54573 * 104.90159 * 343.80558 * 18 17 16 20 20 C 1.51108 * 124.61909 * 0.02562 * 16 14 13 21 21 C 1.46505 * 119.99883 * 141.42662 * 9 7 2 22 22 C 1.53006 * 117.49670 * 3.19117 * 21 9 7 23 23 C 1.52998 * 117.49913 * 294.53331 * 21 9 7 24 24 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47161 * 29.99961 * 10 9 7 26 26 H 1.09000 * 109.47313 * 150.00403 * 10 9 7 27 27 H 1.08998 * 109.47165 * 299.99999 * 11 10 9 28 28 H 1.08994 * 109.47147 * 60.00189 * 11 10 9 29 29 H 1.08998 * 109.47166 * 299.99882 * 12 11 10 30 30 H 1.09000 * 109.47508 * 60.00447 * 12 11 10 31 31 H 0.97007 * 119.99775 * 359.97438 * 13 12 11 32 32 H 1.08000 * 124.62281 * 0.02562 * 17 16 14 33 33 H 1.08999 * 110.51949 * 224.84989 * 18 17 16 34 34 H 1.09003 * 110.14803 * 102.57637 * 18 17 16 35 35 H 1.08998 * 110.98239 * 266.71128 * 19 18 17 36 36 H 1.09000 * 110.98594 * 142.90845 * 19 18 17 37 37 H 1.09002 * 110.36642 * 315.43311 * 20 16 14 38 38 H 1.08999 * 110.36676 * 77.64437 * 20 16 14 39 39 H 1.09001 * 115.55232 * 148.85853 * 21 9 7 40 40 H 1.08993 * 117.49982 * 0.02562 * 22 21 9 41 41 H 1.09000 * 117.49376 * 145.01943 * 22 21 9 42 42 H 1.09001 * 117.50045 * 214.98064 * 23 21 9 43 43 H 1.09006 * 117.49626 * 359.97234 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0102 -1.2022 0.0005 8 1 1.5303 -2.1026 0.3545 9 7 3.3033 -1.2464 -0.4480 10 6 3.7040 -0.4466 -1.6082 11 6 3.5030 -1.2647 -2.8855 12 6 3.9220 -0.4296 -4.0971 13 7 3.7301 -1.2130 -5.3201 14 6 4.0345 -0.6770 -6.5186 15 8 4.4689 0.4571 -6.5847 16 6 3.8424 -1.4638 -7.7465 17 6 4.1055 -1.0265 -8.9704 18 6 3.7974 -2.0914 -9.9974 19 6 3.6909 -3.4044 -9.1889 20 6 3.3117 -2.8781 -7.7856 21 6 4.2861 -2.0936 0.2323 22 6 3.7893 -2.9613 1.3905 23 6 4.6552 -1.7308 1.6721 24 1 -0.4850 0.8401 0.0004 25 1 3.0947 0.4560 -1.6552 26 1 4.7545 -0.1715 -1.5146 27 1 4.1122 -2.1673 -2.8385 28 1 2.4525 -1.5398 -2.9792 29 1 3.3131 0.4732 -4.1442 30 1 4.9726 -0.1549 -4.0032 31 1 3.3840 -2.1177 -5.2673 32 1 4.4904 -0.0442 -9.2015 33 1 4.6024 -2.1607 -10.7291 34 1 2.8513 -1.8729 -10.4927 35 1 4.6473 -3.9267 -9.1648 36 1 2.9069 -4.0470 -9.5894 37 1 3.7862 -3.4828 -7.0128 38 1 2.2293 -2.8808 -7.6571 39 1 5.0732 -2.5024 -0.4013 40 1 2.7314 -2.9022 1.6459 41 1 4.2500 -3.9408 1.5190 42 1 5.6850 -1.9012 1.9859 43 1 4.1671 -0.8615 2.1130 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707480216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:31 Heat of formation + Delta-G solvation = -0.745008 kcal Electronic energy + Delta-G solvation = -21323.975458 eV Core-core repulsion = 18176.731994 eV Total energy + Delta-G solvation = -3147.243464 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.04575 -39.12790 -38.66616 -36.75916 -35.28624 -33.77928 -31.73338 -30.20627 -29.24208 -27.05439 -25.53627 -23.38801 -22.95097 -22.66662 -21.58236 -21.39417 -19.74197 -18.44840 -18.14249 -17.43519 -17.19091 -16.84243 -16.69198 -16.15785 -15.52218 -15.41862 -15.16485 -14.55485 -14.16508 -14.04528 -13.78736 -13.77947 -13.58166 -12.96991 -12.78706 -12.69601 -12.59488 -12.51452 -12.44688 -12.06710 -12.05876 -11.99038 -11.78243 -11.51779 -11.29013 -11.07222 -10.93333 -10.62884 -10.25222 -9.83491 -8.64093 -8.23447 -5.61101 0.35687 1.26352 1.37221 1.47267 2.16876 2.23844 2.37633 2.97884 3.18581 3.35449 3.52572 3.64668 4.02686 4.04802 4.16623 4.22172 4.29973 4.31524 4.34476 4.40986 4.48704 4.55028 4.69856 4.75329 4.82517 4.84187 4.90734 4.95683 4.98492 5.03601 5.18912 5.20418 5.29766 5.33059 5.35839 5.38526 5.44702 5.53525 5.55145 5.93650 6.19838 6.51729 6.98365 7.16065 7.62042 8.02895 8.95565 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020992 B = 0.003679 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.549845 B = 7609.666224 C = 8092.715869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.011 4.011 3 Si 0.928 3.072 4 H -0.278 1.278 5 H -0.311 1.311 6 H -0.258 1.258 7 C -0.249 4.249 8 H 0.051 0.949 9 N -0.587 5.587 10 C 0.137 3.863 11 C -0.125 4.125 12 C 0.126 3.874 13 N -0.710 5.710 14 C 0.554 3.446 15 O -0.595 6.595 16 C -0.216 4.216 17 C -0.070 4.070 18 C -0.103 4.103 19 C -0.117 4.117 20 C -0.091 4.091 21 C 0.105 3.895 22 C -0.184 4.184 23 C -0.217 4.217 24 H 0.262 0.738 25 H 0.030 0.970 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.414 0.586 32 H 0.127 0.873 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.129 0.871 40 H 0.067 0.933 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.685 -8.929 -17.121 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.208 4.208 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.240 1.240 6 H -0.182 1.182 7 C -0.378 4.378 8 H 0.068 0.932 9 N -0.307 5.307 10 C 0.012 3.988 11 C -0.165 4.165 12 C 0.001 3.999 13 N -0.361 5.361 14 C 0.344 3.656 15 O -0.478 6.478 16 C -0.219 4.219 17 C -0.090 4.090 18 C -0.140 4.140 19 C -0.155 4.155 20 C -0.128 4.128 21 C -0.002 4.002 22 C -0.222 4.222 23 C -0.258 4.258 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.251 0.749 32 H 0.145 0.855 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.831 -8.062 -17.127 21.809 hybrid contribution -0.534 1.127 0.697 1.428 sum 10.297 -6.935 -16.430 20.593 Atomic orbital electron populations 1.69964 1.07469 1.27247 1.54059 1.25985 0.95488 1.00528 0.98833 0.86091 0.79794 0.81227 0.77176 1.20531 1.23970 1.18232 1.18582 0.87440 0.92986 1.38831 0.93161 1.43779 1.06188 1.51441 1.29254 1.21116 0.98531 0.93059 0.86084 1.22095 1.01862 0.99608 0.92963 1.21237 1.01007 0.94288 0.83346 1.45876 1.65724 1.18997 1.05484 1.18635 0.76689 0.85782 0.84479 1.90752 1.48322 1.20805 1.87947 1.21910 1.08083 0.99371 0.92503 1.24371 0.90948 0.99489 0.94193 1.21557 1.03565 0.91981 0.96871 1.22456 1.03172 0.96747 0.93078 1.21320 1.01328 0.90293 0.99867 1.21545 0.94413 0.96896 0.87306 1.23043 0.99388 0.95322 1.04480 1.23369 0.99977 0.98488 1.03939 0.92911 0.95219 0.91235 0.89555 0.92767 0.93945 0.91079 0.74891 0.85514 0.88474 0.88369 0.90122 0.88671 0.90059 0.89814 0.85359 0.91415 0.86787 0.87121 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.97 21.65 0.30 -58.15 16 2 C -0.01 -0.66 5.30 84.86 0.45 -0.21 16 3 Si 0.93 46.58 25.08 68.60 1.72 48.30 16 4 H -0.28 -13.55 6.69 99.48 0.67 -12.88 16 5 H -0.31 -15.98 7.11 99.48 0.71 -15.28 16 6 H -0.26 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.25 -13.58 8.95 84.03 0.75 -12.83 16 8 H 0.05 3.04 6.86 -2.91 -0.02 3.02 16 9 N -0.59 -26.22 2.39 -678.00 -1.62 -27.85 16 10 C 0.14 5.49 4.55 86.38 0.39 5.88 16 11 C -0.13 -4.17 5.65 30.60 0.17 -3.99 16 12 C 0.13 3.99 5.67 86.38 0.49 4.48 16 13 N -0.71 -19.48 5.55 -466.71 -2.59 -22.06 16 14 C 0.55 16.72 7.79 86.57 0.67 17.40 16 15 O -0.60 -23.01 16.77 -4.09 -0.07 -23.08 16 16 C -0.22 -4.75 6.09 -18.57 -0.11 -4.87 16 17 C -0.07 -1.33 10.43 24.66 0.26 -1.07 16 18 C -0.10 -1.15 6.80 30.52 0.21 -0.94 16 19 C -0.12 -1.19 7.17 31.67 0.23 -0.96 16 20 C -0.09 -1.35 6.02 30.52 0.18 -1.16 16 21 C 0.11 3.86 6.56 44.99 0.30 4.16 16 22 C -0.18 -6.54 9.80 30.62 0.30 -6.24 16 23 C -0.22 -7.67 10.36 30.62 0.32 -7.35 16 24 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.03 1.36 3.40 -2.39 -0.01 1.35 16 26 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 27 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 9.04 7.48 -92.70 -0.69 8.35 16 32 H 0.13 2.60 8.03 -2.91 -0.02 2.58 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 1.07 7.83 -2.39 -0.02 1.05 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 40 H 0.07 2.90 6.44 -2.39 -0.02 2.89 16 41 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 42 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -71.97 348.09 2.61 -69.37 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.26 Total: 21.18 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.61 Total: -7.71 kcal Atomic # 7 Polarization: -104.15 SS G_CDS: -3.91 Total: -108.06 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.07 Total: -23.08 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 1.72 Total: 48.30 kcal Total: -71.97 2.61 -69.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707480216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.620 kcal (2) G-P(sol) polarization free energy of solvation -71.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds