Wall clock time and date at job start Mon Mar 30 2020 23:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00051 * 3 2 1 5 5 H 1.48500 * 109.47105 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47117 * 150.00012 * 3 2 1 7 7 C 1.38809 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46875 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.50327 * 55.05822 * 11 10 9 13 13 C 1.53041 * 109.49707 * 175.16212 * 11 10 9 14 14 C 1.53039 * 109.53550 * 181.31382 * 13 11 10 15 15 C 1.53623 * 109.24422 * 298.50599 * 14 13 11 16 16 N 1.46930 * 108.53943 * 54.85991 * 15 14 13 17 17 C 1.34777 * 120.63014 * 126.37134 * 16 15 14 18 18 O 1.21622 * 119.99882 * 5.88733 * 17 16 15 19 19 C 1.47097 * 119.99892 * 185.89107 * 17 16 15 20 20 C 1.32616 * 124.61831 * 156.53787 * 19 17 16 21 21 C 1.51111 * 110.75795 * 180.02562 * 20 19 17 22 22 C 1.54575 * 104.84008 * 343.40317 * 21 20 19 23 23 C 1.51110 * 124.62306 * 336.56099 * 19 17 16 24 24 C 1.46924 * 118.73669 * 306.09380 * 16 15 14 25 25 H 0.97010 * 120.00016 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99475 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47338 * 60.00147 * 10 9 7 28 28 H 1.09001 * 109.46909 * 299.99813 * 10 9 7 29 29 H 1.09005 * 109.45893 * 301.33034 * 13 11 10 30 30 H 1.08994 * 109.46204 * 61.30797 * 13 11 10 31 31 H 1.09003 * 109.49750 * 58.58711 * 14 13 11 32 32 H 1.09002 * 109.49588 * 178.64731 * 14 13 11 33 33 H 1.08997 * 109.74262 * 295.12224 * 15 14 13 34 34 H 1.08997 * 109.66612 * 174.54926 * 15 14 13 35 35 H 1.07997 * 124.61934 * 0.04212 * 20 19 17 36 36 H 1.09003 * 110.36750 * 102.24233 * 21 20 19 37 37 H 1.08996 * 110.36566 * 224.56082 * 21 20 19 38 38 H 1.09000 * 110.98589 * 143.12957 * 22 21 20 39 39 H 1.09007 * 110.98425 * 266.92376 * 22 21 20 40 40 H 1.08994 * 110.36362 * 315.41968 * 23 19 17 41 41 H 1.09002 * 110.36507 * 77.62845 * 23 19 17 42 42 H 1.09001 * 109.58021 * 173.65315 * 24 16 15 43 43 H 1.08998 * 109.58534 * 293.92680 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3803 -4.7137 -0.8436 13 6 1.8243 -6.1421 -0.1229 14 6 0.8288 -7.3039 -0.1565 15 6 0.0305 -7.3249 1.1558 16 7 -0.5882 -6.0060 1.3474 17 6 -1.9141 -5.8940 1.5614 18 8 -2.5935 -6.8927 1.7043 19 6 -2.5396 -4.5641 1.6222 20 6 -3.8218 -4.3229 1.3845 21 6 -4.1264 -2.8504 1.5337 22 6 -2.9230 -2.2742 2.3142 23 6 -1.8086 -3.2863 1.9636 24 6 0.2671 -4.8120 1.3073 25 1 -0.4851 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0002 27 1 2.6846 -3.7146 0.8894 28 1 2.6846 -3.7145 -0.8906 29 1 2.4114 -6.1401 -1.0413 30 1 2.4893 -6.2586 0.7329 31 1 0.1476 -7.1750 -0.9977 32 1 1.3700 -8.2436 -0.2674 33 1 0.6986 -7.5397 1.9898 34 1 -0.7458 -8.0880 1.1008 35 1 -4.5491 -5.0763 1.1205 36 1 -4.2047 -2.3780 0.5545 37 1 -5.0478 -2.7090 2.0987 38 1 -2.6693 -1.2755 1.9589 39 1 -3.1204 -2.2669 3.3862 40 1 -1.1536 -3.4415 2.8208 41 1 -1.2335 -2.9376 1.1058 42 1 -0.3530 -3.9168 1.3525 43 1 0.9524 -4.8249 2.1549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713226933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:01 Heat of formation + Delta-G solvation = 1.600753 kcal Electronic energy + Delta-G solvation = -22831.350840 eV Core-core repulsion = 19684.209096 eV Total energy + Delta-G solvation = -3147.141744 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38823 -37.96438 -37.28524 -34.75791 -32.90433 -32.00062 -29.88545 -29.10143 -28.24091 -25.48340 -25.45316 -23.19225 -21.80356 -21.08572 -20.42197 -19.65635 -18.15725 -17.07842 -16.45822 -16.03874 -15.54512 -14.82137 -14.76559 -14.63953 -14.12086 -13.81873 -13.51562 -13.02732 -12.95124 -12.74578 -12.58113 -12.26973 -12.15237 -11.73241 -11.58626 -11.39149 -11.15204 -11.05512 -10.88947 -10.86430 -10.80212 -10.55389 -10.35313 -10.04801 -9.94856 -9.70049 -9.43939 -8.92139 -8.76233 -8.34097 -6.97167 -5.81610 -3.09639 1.63010 3.16683 3.40761 3.43162 3.46914 3.47470 4.54639 4.60259 4.81381 4.86384 5.00687 5.06883 5.15883 5.22893 5.29863 5.42151 5.45083 5.54634 5.59595 5.70604 5.83094 5.84741 5.89805 5.92670 5.99942 6.02681 6.10396 6.14470 6.15485 6.22871 6.36948 6.40648 6.43108 6.50096 6.58976 6.70736 6.76097 6.77224 6.86581 7.60955 7.67286 8.36237 8.37618 9.49092 10.04605 10.39994 11.41008 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.006497 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.153267 B = 4308.473913 C = 5987.043654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.158 3.842 11 C -0.108 4.108 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.132 4.132 15 C 0.111 3.889 16 N -0.602 5.602 17 C 0.569 3.431 18 O -0.557 6.557 19 C -0.190 4.190 20 C -0.082 4.082 21 C -0.105 4.105 22 C -0.122 4.122 23 C -0.092 4.092 24 C 0.064 3.936 25 H 0.255 0.745 26 H 0.381 0.619 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.138 0.862 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.048 -10.404 2.719 11.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.030 3.970 11 C -0.128 4.128 12 H 0.091 0.909 13 C -0.151 4.151 14 C -0.170 4.170 15 C -0.012 4.012 16 N -0.334 5.334 17 C 0.360 3.640 18 O -0.437 6.437 19 C -0.193 4.193 20 C -0.101 4.101 21 C -0.141 4.141 22 C -0.159 4.159 23 C -0.128 4.128 24 C -0.057 4.057 25 H 0.065 0.935 26 H 0.216 0.784 27 H 0.040 0.960 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.155 0.845 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.238 -10.808 2.815 11.629 hybrid contribution 0.397 0.870 -0.125 0.965 sum -2.841 -9.938 2.690 10.680 Atomic orbital electron populations 1.69625 1.04939 1.25602 1.57788 1.24683 0.95554 0.97502 1.02952 0.86222 0.78710 0.83950 0.77479 1.21827 1.21791 1.20851 1.19215 0.91074 0.84100 1.42693 0.91221 1.42402 1.05688 1.00037 1.89629 1.20673 0.93089 0.85044 0.98172 1.21691 0.98002 0.95219 0.97857 0.90862 1.21524 0.97498 0.93861 1.02180 1.21976 0.98429 0.98929 0.97677 1.21659 0.97166 0.85269 0.97102 1.48033 1.06923 1.08004 1.70427 1.18109 0.81421 0.88668 0.75800 1.90730 1.62733 1.38738 1.51497 1.21876 0.96447 0.93934 1.07054 1.23956 0.95102 0.97523 0.93535 1.21467 0.99241 0.91945 1.01491 1.22444 0.93801 1.00018 0.99638 1.21567 0.97851 0.91020 1.02379 1.23153 0.95242 0.89667 0.97597 0.93543 0.78433 0.96046 0.95926 0.91610 0.91825 0.91637 0.91030 0.91744 0.89429 0.85091 0.89467 0.90756 0.89165 0.91567 0.90838 0.87339 0.84468 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.94 13.06 55.49 0.72 -25.21 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.55 29.55 -169.99 -5.02 16.52 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.35 9.99 -15.06 -0.15 -6.51 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -17.24 5.38 -59.91 -0.32 -17.56 16 10 C 0.16 3.00 5.65 -4.04 -0.02 2.98 16 11 C -0.11 -1.71 2.38 -90.50 -0.22 -1.92 16 12 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 13 C -0.11 -1.44 5.16 -26.69 -0.14 -1.58 16 14 C -0.13 -1.55 6.10 -26.39 -0.16 -1.71 16 15 C 0.11 1.46 6.44 -3.48 -0.02 1.44 16 16 N -0.60 -9.31 2.97 -173.90 -0.52 -9.83 16 17 C 0.57 9.80 7.61 -12.67 -0.10 9.70 16 18 O -0.56 -10.81 16.33 5.26 0.09 -10.73 16 19 C -0.19 -3.02 5.85 -102.73 -0.60 -3.62 16 20 C -0.08 -1.16 10.50 -36.01 -0.38 -1.54 16 21 C -0.10 -1.34 6.80 -26.85 -0.18 -1.52 16 22 C -0.12 -1.74 7.16 -25.08 -0.18 -1.92 16 23 C -0.09 -1.46 4.43 -26.86 -0.12 -1.57 16 24 C 0.06 1.01 4.84 -3.71 -0.02 0.99 16 25 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.38 9.20 5.73 -40.82 -0.23 8.97 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.22 7.04 -51.93 -0.37 0.85 16 35 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 40 H 0.07 1.14 7.44 -51.93 -0.39 0.76 16 41 H 0.11 1.99 5.20 -51.93 -0.27 1.72 16 42 H 0.14 2.32 1.45 -73.74 -0.11 2.21 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 333.92 15.07 5.03 5.03 Total: -1.00 -29.60 333.92 -9.23 -38.82 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -6.83 Total: 10.12 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -2.38 Total: -7.17 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.11 Total: -52.60 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.60 -9.23 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713226933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.425 kcal (2) G-P(sol) polarization free energy of solvation -29.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds