Wall clock time and date at job start Mon Mar 30 2020 23:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 120.00230 * 2 1 4 4 H 1.48502 * 109.47162 * 270.00051 * 3 2 1 5 5 H 1.48500 * 109.47105 * 29.99822 * 3 2 1 6 6 H 1.48499 * 109.47117 * 150.00012 * 3 2 1 7 7 C 1.38809 * 119.99623 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99947 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00545 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00176 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46875 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.50327 * 55.05822 * 11 10 9 13 13 C 1.53041 * 109.49707 * 175.16212 * 11 10 9 14 14 C 1.53039 * 109.53550 * 181.31382 * 13 11 10 15 15 C 1.53623 * 109.24422 * 298.50599 * 14 13 11 16 16 N 1.46930 * 108.53943 * 54.85991 * 15 14 13 17 17 C 1.34777 * 120.63014 * 126.37134 * 16 15 14 18 18 O 1.21622 * 119.99882 * 5.88733 * 17 16 15 19 19 C 1.47097 * 119.99892 * 185.89107 * 17 16 15 20 20 C 1.32616 * 124.61831 * 156.53787 * 19 17 16 21 21 C 1.51111 * 110.75795 * 180.02562 * 20 19 17 22 22 C 1.54575 * 104.84008 * 343.40317 * 21 20 19 23 23 C 1.51110 * 124.62306 * 336.56099 * 19 17 16 24 24 C 1.46924 * 118.73669 * 306.09380 * 16 15 14 25 25 H 0.97010 * 120.00016 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99475 * 359.97438 * 9 7 2 27 27 H 1.09000 * 109.47338 * 60.00147 * 10 9 7 28 28 H 1.09001 * 109.46909 * 299.99813 * 10 9 7 29 29 H 1.09005 * 109.45893 * 301.33034 * 13 11 10 30 30 H 1.08994 * 109.46204 * 61.30797 * 13 11 10 31 31 H 1.09003 * 109.49750 * 58.58711 * 14 13 11 32 32 H 1.09002 * 109.49588 * 178.64731 * 14 13 11 33 33 H 1.08997 * 109.74262 * 295.12224 * 15 14 13 34 34 H 1.08997 * 109.66612 * 174.54926 * 15 14 13 35 35 H 1.07997 * 124.61934 * 0.04212 * 20 19 17 36 36 H 1.09003 * 110.36750 * 102.24233 * 21 20 19 37 37 H 1.08996 * 110.36566 * 224.56082 * 21 20 19 38 38 H 1.09000 * 110.98589 * 143.12957 * 22 21 20 39 39 H 1.09007 * 110.98425 * 266.92376 * 22 21 20 40 40 H 1.08994 * 110.36362 * 315.41968 * 23 19 17 41 41 H 1.09002 * 110.36507 * 77.62845 * 23 19 17 42 42 H 1.09001 * 109.58021 * 173.65315 * 24 16 15 43 43 H 1.08998 * 109.58534 * 293.92680 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 3.0901 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 6 1.0637 -4.8197 -0.0012 12 1 0.3803 -4.7137 -0.8436 13 6 1.8243 -6.1421 -0.1229 14 6 0.8288 -7.3039 -0.1565 15 6 0.0305 -7.3249 1.1558 16 7 -0.5882 -6.0060 1.3474 17 6 -1.9141 -5.8940 1.5614 18 8 -2.5935 -6.8927 1.7043 19 6 -2.5396 -4.5641 1.6222 20 6 -3.8218 -4.3229 1.3845 21 6 -4.1264 -2.8504 1.5337 22 6 -2.9230 -2.2742 2.3142 23 6 -1.8086 -3.2863 1.9636 24 6 0.2671 -4.8120 1.3073 25 1 -0.4851 0.8401 -0.0004 26 1 0.3554 -2.3881 0.0002 27 1 2.6846 -3.7146 0.8894 28 1 2.6846 -3.7145 -0.8906 29 1 2.4114 -6.1401 -1.0413 30 1 2.4893 -6.2586 0.7329 31 1 0.1476 -7.1750 -0.9977 32 1 1.3700 -8.2436 -0.2674 33 1 0.6986 -7.5397 1.9898 34 1 -0.7458 -8.0880 1.1008 35 1 -4.5491 -5.0763 1.1205 36 1 -4.2047 -2.3780 0.5545 37 1 -5.0478 -2.7090 2.0987 38 1 -2.6693 -1.2755 1.9589 39 1 -3.1204 -2.2669 3.3862 40 1 -1.1536 -3.4415 2.8208 41 1 -1.2335 -2.9376 1.1058 42 1 -0.3530 -3.9168 1.3525 43 1 0.9524 -4.8249 2.1549 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713226933.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:56:00 Heat of formation + Delta-G solvation = -14.822063 kcal Electronic energy + Delta-G solvation = -22832.062987 eV Core-core repulsion = 19684.209096 eV Total energy + Delta-G solvation = -3147.853891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.64087 -39.16538 -38.60487 -36.43331 -34.29706 -33.47605 -31.52539 -30.30163 -29.44290 -27.10367 -26.67187 -24.82641 -23.07208 -22.36067 -21.73132 -20.82036 -19.40950 -18.98695 -17.69547 -17.31689 -16.78028 -16.62336 -16.04479 -15.73827 -15.55319 -15.34544 -15.11039 -14.44803 -14.22347 -14.06792 -13.79822 -13.59202 -13.38418 -12.99243 -12.93728 -12.89444 -12.74160 -12.52657 -12.21155 -12.15179 -12.05003 -11.96013 -11.85516 -11.67526 -11.41465 -11.19996 -10.90983 -10.69037 -9.99119 -9.55499 -8.91780 -7.87269 -5.14975 0.41016 1.51788 1.52618 1.60119 1.94347 2.16383 2.60759 3.38820 3.46183 3.64518 3.67075 3.88986 3.92357 3.99701 4.07384 4.12648 4.25852 4.29802 4.31529 4.49959 4.58704 4.69196 4.77450 4.80661 4.85477 4.88031 4.90360 4.94065 4.98965 5.04728 5.09055 5.18325 5.22171 5.30450 5.33114 5.40086 5.48263 5.57118 5.58643 5.60608 6.33175 6.34700 7.06928 7.42186 8.15023 8.40779 9.34835 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014794 B = 0.006497 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.153267 B = 4308.473913 C = 5987.043654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.064 4.064 3 Si 0.963 3.037 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.743 5.743 10 C 0.159 3.841 11 C -0.097 4.097 12 H 0.055 0.945 13 C -0.107 4.107 14 C -0.123 4.123 15 C 0.104 3.896 16 N -0.599 5.599 17 C 0.563 3.437 18 O -0.585 6.585 19 C -0.216 4.216 20 C -0.064 4.064 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.083 4.083 24 C 0.067 3.933 25 H 0.251 0.749 26 H 0.376 0.624 27 H 0.027 0.973 28 H 0.023 0.977 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.570 -11.145 2.944 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.257 4.257 3 Si 0.794 3.206 4 H -0.220 1.220 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.379 4.379 8 H 0.089 0.911 9 N -0.387 5.387 10 C 0.032 3.968 11 C -0.117 4.117 12 H 0.073 0.927 13 C -0.145 4.145 14 C -0.161 4.161 15 C -0.017 4.017 16 N -0.330 5.330 17 C 0.355 3.645 18 O -0.468 6.468 19 C -0.219 4.219 20 C -0.083 4.083 21 C -0.136 4.136 22 C -0.159 4.159 23 C -0.119 4.119 24 C -0.054 4.054 25 H 0.060 0.940 26 H 0.209 0.791 27 H 0.045 0.955 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.161 0.839 36 H 0.107 0.893 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.144 0.856 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.712 -11.573 3.033 12.268 hybrid contribution 0.266 1.070 -0.205 1.122 sum -2.446 -10.503 2.828 11.149 Atomic orbital electron populations 1.69760 1.05958 1.25795 1.58941 1.25373 0.96392 1.00276 1.03669 0.85299 0.77841 0.80406 0.77103 1.21982 1.22212 1.19914 1.19541 0.91384 0.85331 1.41633 0.91052 1.42575 1.05664 1.00927 1.89484 1.20793 0.93567 0.84350 0.98125 1.21548 0.97212 0.95805 0.97128 0.92655 1.21508 0.97568 0.92131 1.03323 1.21930 0.97925 0.99933 0.96269 1.21882 0.97343 0.83851 0.98665 1.48088 1.06528 1.08791 1.69566 1.18335 0.81872 0.88781 0.75541 1.90703 1.63340 1.39562 1.53227 1.21869 0.97179 0.93417 1.09432 1.24251 0.94589 0.98519 0.90982 1.21489 0.99695 0.90637 1.01757 1.22427 0.94050 0.98576 1.00819 1.21393 0.98024 0.91534 1.00997 1.23047 0.95126 0.89568 0.97676 0.94040 0.79087 0.95488 0.95894 0.90581 0.90493 0.92729 0.87838 0.89986 0.90111 0.83944 0.89298 0.87792 0.91049 0.89974 0.91274 0.90205 0.85621 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.02 13.06 21.65 0.28 -53.74 16 2 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 3 Si 0.96 44.36 29.55 68.60 2.03 46.38 16 4 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.25 -13.12 9.99 84.03 0.84 -12.28 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.74 -35.29 5.38 -343.46 -1.85 -37.14 16 10 C 0.16 5.94 5.65 86.38 0.49 6.43 16 11 C -0.10 -3.01 2.38 -10.72 -0.03 -3.04 16 12 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 13 C -0.11 -2.50 5.16 30.62 0.16 -2.34 16 14 C -0.12 -2.59 6.10 30.82 0.19 -2.41 16 15 C 0.10 2.59 6.44 86.51 0.56 3.15 16 16 N -0.60 -18.25 2.97 -822.34 -2.44 -20.69 16 17 C 0.56 19.38 7.61 86.57 0.66 20.04 16 18 O -0.59 -22.67 16.33 -4.10 -0.07 -22.74 16 19 C -0.22 -6.88 5.85 -18.57 -0.11 -6.99 16 20 C -0.06 -1.76 10.50 24.66 0.26 -1.50 16 21 C -0.10 -2.40 6.80 30.51 0.21 -2.19 16 22 C -0.12 -3.45 7.16 31.66 0.23 -3.22 16 23 C -0.08 -2.69 4.43 30.51 0.14 -2.55 16 24 C 0.07 2.10 4.84 86.36 0.42 2.51 16 25 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 26 H 0.38 18.64 5.73 -92.71 -0.53 18.11 16 27 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 2.15 7.04 -2.39 -0.02 2.14 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 40 H 0.07 2.22 7.44 -2.39 -0.02 2.20 16 41 H 0.08 3.07 5.20 -2.39 -0.01 3.06 16 42 H 0.13 4.36 1.45 -22.87 -0.03 4.32 16 43 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -63.08 333.92 2.87 -60.21 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: 0.44 Total: 35.10 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: 4.47 Total: -7.38 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -4.00 Total: -111.57 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.07 Total: -22.74 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.08 2.87 -60.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713226933.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.386 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds